AT4G37720

Phytosulfokine precursor protein (PSK)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011726
Physical Location & Seq
Reverse (-)
17718953 .. 17719321
369 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G37720.1

Sequence Viewer

Length: 264 bp
ATGGCAAATCTCTCTACTTTGATCACGATAGCTCTCCTCCTTTGCGCCACCATGCTAACGTGCAGCGCCCGCCCTGAACCTGCCTACTTCGCCTCCTTCACAACCTCTCCGGCGGATACACTTAGTCTGGAAATGATAGAATCAAAATTACATGAGGTGGCGGGAGAGAGCTGCGATAAAGAAGACGACGAAGATTGCTTGGTGAGAAGAACATTGACGGCTCATCTTGATTATATCTACACACATAAGAATAATCATCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0008150 GO:0008283 GO:0009987 GO:0030154 GO:0031012 GO:0032502 GO:0044421 GO:0048869
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PSK

Protein Analysis

87

Amino Acids

9.7

Weight (kDa)

4.94

Isoelectric Point (pI)

51.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSK PF06404 12 - 86 1.2e-15 Phytosulfokine precursor protein (PSK)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011726)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22860 AT4G37720
fragaria_vesca FvH4_1g18100
malus_domestica MD02G1189200.v1.1 MD15G1300000.v1.1
prunus_persica Prupe.6G217500_v2.0.a1 Prupe.6G217500_v2.0.a1
pyrus_communis pycom02g15340 pycom15g26260
rosa_chinensis RchiOBHm_Chr2g0108571 RchiOBHm_Chr2g0124661
rosa_multiflora Rmu_sc0007574.1_g000005
rosa_roxburghii Rroxscaffold_2G00135000
rosa_rugosa Rorug02G0154600
rosa_samantha Rh2AG203400 Rh2BG216300 Rh2CG207300 Rh2DG210500
rosa_wichuraiana Rw2G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 88
AciI CCGC 3 cut(s) 70, 113, 161
AluBI AGCT 2 cut(s) 32, 171
AluI AGCT 2 cut(s) 32, 171
ApeKI GCWGC 2 cut(s) 63, 171
AspLEI GCGC 2 cut(s) 47, 68
AsuHPI GGTGA 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 189
BbvI GCAGC 2 cut(s) 75, 158
BceAI ACGGC 1 cut(s) 234
BciVI GTATCC 1 cut(s) 109
BclI TGATCA 1 cut(s) 21
BfoI RGCGCY 1 cut(s) 69
BfuAI ACCTGC 1 cut(s) 88
BfuI GTATCC 1 cut(s) 109
BisI GCNGC 2 cut(s) 64, 172
BlsI GCNGC 2 cut(s) 65, 173
BpiI GAAGAC 1 cut(s) 189
BsaXI ACNNNNNCTCC 4 cut(s) 77, 91, 107, 121
BseRI GAGGAG 1 cut(s) 26
BseXI GCAGC 2 cut(s) 75, 158
BsgI GTGCAG 1 cut(s) 82
BsiSI CCGG 1 cut(s) 110
Bsp143I GATC 1 cut(s) 21
BspACI CCGC 3 cut(s) 70, 113, 161
BspMI ACCTGC 1 cut(s) 88
BssMI GATC 1 cut(s) 21
BstC8I GCNNGC 1 cut(s) 70
BstDEI CTNAG 1 cut(s) 122
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 2 cut(s) 47, 68
BstKTI GATC 1 cut(s) 24
BstMBI GATC 1 cut(s) 21
BstMWI GCNNNNNNNGC 2 cut(s) 69, 89
BstV1I GCAGC 2 cut(s) 75, 158
BstV2I GAAGAC 1 cut(s) 189
BsuI GTATCC 1 cut(s) 109
BveI ACCTGC 1 cut(s) 88
Cac8I GCNNGC 1 cut(s) 70
CfoI GCGC 2 cut(s) 47, 68
CviAII CATG 2 cut(s) 52, 152
CviJI RGCY 3 cut(s) 32, 171, 221
CviKI_1 RGCY 3 cut(s) 32, 171, 221
DdeI CTNAG 1 cut(s) 122
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
EciI GGCGGA 1 cut(s) 128
FaeI CATG 2 cut(s) 55, 155
FaiI YATR 4 cut(s) 53, 153, 234, 246
FatI CATG 2 cut(s) 51, 151
FauI CCCGC 2 cut(s) 77, 154
FbaI TGATCA 1 cut(s) 21
Fnu4HI GCNGC 2 cut(s) 64, 172
Fsp4HI GCNGC 2 cut(s) 64, 172
GlaI GCGC 2 cut(s) 46, 67
GluI GCNGC 2 cut(s) 64, 172
HaeII RGCGCY 1 cut(s) 69
HapII CCGG 1 cut(s) 110
HhaI GCGC 2 cut(s) 47, 68
Hin1II CATG 2 cut(s) 55, 155
Hin6I GCGC 2 cut(s) 45, 66
HinP1I GCGC 2 cut(s) 45, 66
HinfI GANTC 1 cut(s) 140
HpaII CCGG 1 cut(s) 110
HphI GGTGA 1 cut(s) 214
Hpy188III TCNNGA 3 cut(s) 25, 128, 227
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 1 cut(s) 106
HpyCH4IV ACGT 1 cut(s) 59
HpyCH4V TGCA 1 cut(s) 63
HpyF10VI GCNNNNNNNGC 2 cut(s) 69, 89
HpyF3I CTNAG 1 cut(s) 122
HpySE526I ACGT 1 cut(s) 59
Hsp92II CATG 2 cut(s) 55, 155
HspAI GCGC 2 cut(s) 45, 66
Ksp22I TGATCA 1 cut(s) 21
Kzo9I GATC 1 cut(s) 21
LpnPI CCDG 4 cut(s) 87, 93, 113, 123
Lsp1109I GCAGC 2 cut(s) 75, 158
MaeII ACGT 1 cut(s) 59
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MboII GAAGA 3 cut(s) 194, 203, 219
MluCI AATT 1 cut(s) 146
MnlI CCTC 4 cut(s) 47, 103, 115, 148
MseI TTAA 1 cut(s) 262
MspI CCGG 1 cut(s) 110
MwoI GCNNNNNNNGC 2 cut(s) 69, 89
NdeII GATC 1 cut(s) 21
NlaIII CATG 2 cut(s) 55, 155
PfeI GAWTC 1 cut(s) 140
PkrI GCNGC 2 cut(s) 65, 173
SaqAI TTAA 1 cut(s) 262
SatI GCNGC 2 cut(s) 64, 172
Sau3AI GATC 1 cut(s) 21
SetI ASST 6 cut(s) 34, 62, 82, 107, 159, 173
Sse9I AATT 1 cut(s) 146
SsiI CCGC 3 cut(s) 70, 113, 161
TaiI ACGT 1 cut(s) 62
TasI AATT 1 cut(s) 146
TfiI GAWTC 1 cut(s) 140
Tru1I TTAA 1 cut(s) 262
Tru9I TTAA 1 cut(s) 262
TseI GCWGC 2 cut(s) 63, 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.