MD15G1300000.v1.1

Phytosulfokines

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0011726
Physical Location & Seq
Reverse (-)
28529252 .. 28529832
581 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1300000.v1.1.491

Sequence Viewer

Length: 249 bp
ATGGCCGGATCATATAAAGCCCTCTTCTTCTTAGCCCTTGTCCTGTGCTCTACTGTAGTCGTTTATGCAGCAAGACCAGAACCAGCTTTTTCAGCAGCGAAGTCTGCGAAAACCGAACTCGAGGGTGTTGAAACAGAACAGGTTGATGAAGTTGGGAGCTGTGAAGGAGTTGGAGAGGAGGAGTGCTTGATGAGAAGAACTCTGGCTGCTCATGTCGATTATATCTATACACAGAAGCATAATCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PSK

Protein Analysis

83

Amino Acids

8.93

Weight (kDa)

4.85

Isoelectric Point (pI)

47.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSK PF06404 17 - 82 2.7e-16 Phytosulfokine precursor protein (PSK)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011726)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22860 AT4G37720
fragaria_vesca FvH4_1g18100
malus_domestica MD02G1189200.v1.1 MD15G1300000.v1.1
prunus_persica Prupe.6G217500_v2.0.a1 Prupe.6G217500_v2.0.a1
pyrus_communis pycom02g15340 pycom15g26260
rosa_chinensis RchiOBHm_Chr2g0108571 RchiOBHm_Chr2g0124661
rosa_multiflora Rmu_sc0007574.1_g000005
rosa_roxburghii Rroxscaffold_2G00135000
rosa_rugosa Rorug02G0154600
rosa_samantha Rh2AG203400 Rh2BG216300 Rh2CG207300 Rh2DG210500
rosa_wichuraiana Rw2G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 16
AcoI YGGCCR 1 cut(s) 3
AgsI TTSAA 1 cut(s) 131
AluBI AGCT 2 cut(s) 86, 159
AluI AGCT 2 cut(s) 86, 159
Alw21I GWGCWC 1 cut(s) 50
AlwI GGATC 1 cut(s) 16
Ama87I CYCGRG 1 cut(s) 119
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 3 cut(s) 68, 95, 206
AvaI CYCGRG 1 cut(s) 119
Bbv12I GWGCWC 1 cut(s) 50
BbvI GCAGC 3 cut(s) 80, 107, 193
BfmI CTRYAG 1 cut(s) 54
BisI GCNGC 3 cut(s) 69, 96, 207
BlsI GCNGC 3 cut(s) 70, 97, 208
BmeT110I CYCGRG 1 cut(s) 119
BplI GAGNNNNNCTC 2 cut(s) 184, 216
BseRI GAGGAG 2 cut(s) 191, 194
BseXI GCAGC 3 cut(s) 80, 107, 193
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 50
BsiHKCI CYCGRG 1 cut(s) 119
BsiSI CCGG 1 cut(s) 6
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 50
Bsp143I GATC 1 cut(s) 8
BspANI GGCC 1 cut(s) 5
BspPI GGATC 1 cut(s) 16
BssMI GATC 1 cut(s) 8
Bst4CI ACNGT 1 cut(s) 55
Bst6I CTCTTC 1 cut(s) 29
BstDEI CTNAG 1 cut(s) 31
BstKTI GATC 1 cut(s) 11
BstMBI GATC 1 cut(s) 8
BstMWI GCNNNNNNNGC 2 cut(s) 92, 104
BstSFI CTRYAG 1 cut(s) 54
BstV1I GCAGC 3 cut(s) 80, 107, 193
BsuRI GGCC 1 cut(s) 5
CviAII CATG 1 cut(s) 212
CviJI RGCY 6 cut(s) 5, 20, 35, 86, 159, 206
CviKI_1 RGCY 6 cut(s) 5, 20, 35, 86, 159, 206
DdeI CTNAG 1 cut(s) 31
DpnI GATC 1 cut(s) 10
DpnII GATC 1 cut(s) 8
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
Eco88I CYCGRG 1 cut(s) 119
FaeI CATG 1 cut(s) 215
FaiI YATR 7 cut(s) 13, 15, 66, 213, 222, 228, 240
FatI CATG 1 cut(s) 211
Fnu4HI GCNGC 3 cut(s) 69, 96, 207
Fsp4HI GCNGC 3 cut(s) 69, 96, 207
GluI GCNGC 3 cut(s) 69, 96, 207
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 6
Hin1II CATG 1 cut(s) 215
HpaII CCGG 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 104
HpyF3I CTNAG 1 cut(s) 31
Hsp92II CATG 1 cut(s) 215
Kzo9I GATC 1 cut(s) 8
LmnI GCTCC 1 cut(s) 156
LpnPI CCDG 6 cut(s) 19, 56, 90, 96, 125, 188
Lsp1109I GCAGC 3 cut(s) 80, 107, 193
MalI GATC 1 cut(s) 10
MboI GATC 1 cut(s) 8
MboII GAAGA 3 cut(s) 16, 19, 207
MhlI GDGCHC 1 cut(s) 50
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 4 cut(s) 32, 115, 169, 172
MspI CCGG 1 cut(s) 6
MwoI GCNNNNNNNGC 2 cut(s) 92, 104
NdeII GATC 1 cut(s) 8
NlaIII CATG 1 cut(s) 215
PaeR7I CTCGAG 1 cut(s) 119
PkrI GCNGC 3 cut(s) 70, 97, 208
PspXI VCTCGAGB 1 cut(s) 119
SatI GCNGC 3 cut(s) 69, 96, 207
Sau3AI GATC 1 cut(s) 8
SduI GDGCHC 1 cut(s) 50
SetI ASST 3 cut(s) 88, 144, 161
SfcI CTRYAG 1 cut(s) 54
Sfr274I CTCGAG 1 cut(s) 119
SlaI CTCGAG 1 cut(s) 119
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
TaaI ACNGT 1 cut(s) 55
TaqI TCGA 2 cut(s) 120, 216
TseI GCWGC 3 cut(s) 68, 95, 206
TspDTI ATGAA 1 cut(s) 162
XhoI CTCGAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.