pycom02g15340

Phytosulfokines

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0011726
Physical Location & Seq
Reverse (-)
12086462 .. 12087343
882 bp
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UTR
Exon/CDS
Intron
pycom02g15340.1

Sequence Viewer

Length: 411 bp
ATGACCGAAAAACCTCTTCAAGTTGTTCAAGTCCTAAAATGGTCATCTTGTTATCCCATTTCCATAAATTTATTAAATCTCTCACTTGGTGTATACCAAGCTCTATATATACCCCTACCACTTTCATATAGCAGTAGTACAATAACACAGAGAGAAATGGCCGGATCAGTTAAAGCCCTCTTCTTCTTAGCTCTCGTCCTGTGCTCTACTTTATTAGTATATGCAGCAAGACCAGAACCAGCTTTTTCAGCAGTCAATTATGCGAAAACCCGACTCGAGGGTGTTGAAACAGAACAGGTTGATGAGGTGATGGGTGAGAGCTGTGAAGGAGTTGCAGAGGAGGAGTGCTTGATGAGAAGGACTCTGGCTGCTCATGTCGATTACATCTATACACAGAAGCATAATCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PSK

Protein Analysis

137

Amino Acids

15.15

Weight (kDa)

5.13

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSK PF06404 65 - 136 8.8e-16 Phytosulfokine precursor protein (PSK)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011726)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22860 AT4G37720
fragaria_vesca FvH4_1g18100
malus_domestica MD02G1189200.v1.1 MD15G1300000.v1.1
prunus_persica Prupe.6G217500_v2.0.a1 Prupe.6G217500_v2.0.a1
pyrus_communis pycom02g15340 pycom15g26260
rosa_chinensis RchiOBHm_Chr2g0108571 RchiOBHm_Chr2g0124661
rosa_multiflora Rmu_sc0007574.1_g000005
rosa_roxburghii Rroxscaffold_2G00135000
rosa_rugosa Rorug02G0154600
rosa_samantha Rh2AG203400 Rh2BG216300 Rh2CG207300 Rh2DG210500
rosa_wichuraiana Rw2G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 93
AclWI GGATC 1 cut(s) 172
AcoI YGGCCR 1 cut(s) 159
AcsI RAATTY 1 cut(s) 67
AdeI CACNNNGTG 1 cut(s) 89
AfaI GTAC 1 cut(s) 139
AfiI CCNNNNNNNGG 1 cut(s) 277
AgsI TTSAA 3 cut(s) 20, 29, 287
AluBI AGCT 4 cut(s) 101, 191, 242, 321
AluI AGCT 4 cut(s) 101, 191, 242, 321
Alw21I GWGCWC 1 cut(s) 206
AlwI GGATC 1 cut(s) 172
Ama87I CYCGRG 1 cut(s) 275
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 2 cut(s) 224, 368
ApoI RAATTY 1 cut(s) 67
AsuHPI GGTGA 2 cut(s) 319, 326
AvaI CYCGRG 1 cut(s) 275
Bbv12I GWGCWC 1 cut(s) 206
BbvI GCAGC 2 cut(s) 236, 355
BccI CCATC 1 cut(s) 304
BisI GCNGC 2 cut(s) 225, 369
BlsI GCNGC 2 cut(s) 226, 370
BmeT110I CYCGRG 1 cut(s) 275
BplI GAGNNNNNCTC 2 cut(s) 346, 378
Bsc4I CCNNNNNNNGG 1 cut(s) 277
BseLI CCNNNNNNNGG 1 cut(s) 277
BseRI GAGGAG 2 cut(s) 353, 356
BseXI GCAGC 2 cut(s) 236, 355
BshFI GGCC 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 206
BsiHKCI CYCGRG 1 cut(s) 275
BsiSI CCGG 1 cut(s) 162
BslI CCNNNNNNNGG 1 cut(s) 277
BsnI GGCC 1 cut(s) 161
BsoBI CYCGRG 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 206
Bsp143I GATC 1 cut(s) 164
BspANI GGCC 1 cut(s) 161
BspPI GGATC 1 cut(s) 172
BssMI GATC 1 cut(s) 164
BssNAI GTATAC 1 cut(s) 94
Bst1107I GTATAC 1 cut(s) 94
Bst6I CTCTTC 2 cut(s) 21, 185
BstDEI CTNAG 1 cut(s) 187
BstKTI GATC 1 cut(s) 167
BstMBI GATC 1 cut(s) 164
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstV1I GCAGC 2 cut(s) 236, 355
BstZ17I GTATAC 1 cut(s) 94
BsuRI GGCC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 138
CviAII CATG 1 cut(s) 374
CviJI RGCY 7 cut(s) 101, 161, 176, 191, 242, 321, 368
CviKI_1 RGCY 7 cut(s) 101, 161, 176, 191, 242, 321, 368
CviQI GTAC 1 cut(s) 138
DdeI CTNAG 1 cut(s) 187
DpnI GATC 1 cut(s) 166
DpnII GATC 1 cut(s) 164
DraIII CACNNNGTG 1 cut(s) 89
EaeI YGGCCR 1 cut(s) 159
Eam1104I CTCTTC 2 cut(s) 21, 185
EarI CTCTTC 2 cut(s) 21, 185
Eco88I CYCGRG 1 cut(s) 275
FaeI CATG 1 cut(s) 377
FatI CATG 1 cut(s) 373
FblI GTMKAC 1 cut(s) 93
Fnu4HI GCNGC 2 cut(s) 225, 369
Fsp4HI GCNGC 2 cut(s) 225, 369
GluI GCNGC 2 cut(s) 225, 369
HaeIII GGCC 1 cut(s) 161
HapII CCGG 1 cut(s) 162
Hin1II CATG 1 cut(s) 377
HinfI GANTC 2 cut(s) 273, 361
HpaII CCGG 1 cut(s) 162
HphI GGTGA 2 cut(s) 319, 326
Hpy166II GTNNAC 1 cut(s) 94
Hpy8I GTNNAC 1 cut(s) 94
HpyAV CCTTC 2 cut(s) 320, 351
HpyCH4V TGCA 2 cut(s) 224, 335
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 1 cut(s) 187
Hsp92II CATG 1 cut(s) 377
Kzo9I GATC 1 cut(s) 164
LpnPI CCDG 6 cut(s) 175, 212, 246, 252, 281, 350
Lsp1109I GCAGC 2 cut(s) 236, 355
MalI GATC 1 cut(s) 166
MboI GATC 1 cut(s) 164
MboII GAAGA 3 cut(s) 8, 172, 175
MhlI GDGCHC 1 cut(s) 206
MluCI AATT 2 cut(s) 67, 256
MlyI GAGTC 2 cut(s) 267, 355
MnlI CCTC 6 cut(s) 24, 188, 271, 298, 331, 334
MseI TTAA 2 cut(s) 74, 171
MspI CCGG 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 248
NdeII GATC 1 cut(s) 164
NlaIII CATG 1 cut(s) 377
PaeR7I CTCGAG 1 cut(s) 275
PkrI GCNGC 2 cut(s) 226, 370
PleI GAGTC 2 cut(s) 267, 355
PpsI GAGTC 2 cut(s) 267, 355
PspXI VCTCGAGB 1 cut(s) 275
RsaI GTAC 1 cut(s) 139
RsaNI GTAC 1 cut(s) 138
SaqAI TTAA 2 cut(s) 74, 171
SatI GCNGC 2 cut(s) 225, 369
Sau3AI GATC 1 cut(s) 164
SchI GAGTC 2 cut(s) 267, 355
SduI GDGCHC 1 cut(s) 206
SetI ASST 7 cut(s) 16, 103, 193, 244, 300, 309, 323
Sfr274I CTCGAG 1 cut(s) 275
SlaI CTCGAG 1 cut(s) 275
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
Sse9I AATT 2 cut(s) 67, 256
TaqI TCGA 2 cut(s) 276, 378
TaqII GACCGA 1 cut(s) 20
TasI AATT 2 cut(s) 67, 256
TatI WGTACW 1 cut(s) 137
Tru1I TTAA 2 cut(s) 74, 171
Tru9I TTAA 2 cut(s) 74, 171
TseI GCWGC 2 cut(s) 224, 368
TspDTI ATGAA 1 cut(s) 114
XapI RAATTY 1 cut(s) 67
XhoI CTCGAG 1 cut(s) 275
XmiI GTMKAC 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.