Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0011726

Physical Location & Seq

Genomic Coordinates Reverse (-)

10519538 .. 10520516

Gene Structure 979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g18100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGGTTTGCAGACTTCAGACTGTTGATCTAGCAAAGGATAAAATCTCCTTGACTTCCATTATTGCTTACTATTTGGTTGTTGAAACCGAGCAAGCTGATATTGAACAGAGCTGTGAAGGAGTTGGAGAAGATGAGTGCTTAATGAGAAGGACTTTGGCTGCTCACATAGATTACATCTATACCCAGAAGGCTAAACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PSK

Protein Analysis

67

Amino Acids

7.48

Weight (kDa)

4.72

Isoelectric Point (pI)

56.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSK	PF06404	26 - 65	3.9e-15	Phytosulfokine precursor protein (PSK)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22860 AT4G37720
fragaria_vesca	FvH4_1g18100
malus_domestica	MD02G1189200.v1.1 MD15G1300000.v1.1
prunus_persica	Prupe.6G217500_v2.0.a1 Prupe.6G217500_v2.0.a1
pyrus_communis	pycom02g15340 pycom15g26260
rosa_chinensis	RchiOBHm_Chr2g0108571 RchiOBHm_Chr2g0124661
rosa_multiflora	Rmu_sc0007574.1_g000005
rosa_roxburghii	Rroxscaffold_2G00135000
rosa_rugosa	Rorug02G0154600
rosa_samantha	Rh2AG203400 Rh2BG216300 Rh2CG207300 Rh2DG210500
rosa_wichuraiana	Rw2G016260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	2 cut(s)	83, 104
AluBI	AGCT	2 cut(s)	95, 111
AluI	AGCT	2 cut(s)	95, 111
ApeKI	GCWGC	1 cut(s)	158
BbvI	GCAGC	1 cut(s)	145
BfaI	CTAG	1 cut(s)	29
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
BseXI	GCAGC	1 cut(s)	145
Bsp143I	GATC	1 cut(s)	25
BssMI	GATC	1 cut(s)	25
Bst4CI	ACNGT	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	93
BstKTI	GATC	1 cut(s)	28
BstMBI	GATC	1 cut(s)	25
BstV1I	GCAGC	1 cut(s)	145
Cac8I	GCNNGC	1 cut(s)	93
CviJI	RGCY	4 cut(s)	95, 111, 158, 191
CviKI_1	RGCY	4 cut(s)	95, 111, 158, 191
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
FaiI	YATR	2 cut(s)	167, 180
Fnu4HI	GCNGC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	159
FspBI	CTAG	1 cut(s)	29
GluI	GCNGC	1 cut(s)	159
Hpy188I	TCNGA	1 cut(s)	18
HpyAV	CCTTC	3 cut(s)	110, 141, 181
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4V	TGCA	1 cut(s)	9
Kzo9I	GATC	1 cut(s)	25
LpnPI	CCDG	1 cut(s)	197
Lsp1109I	GCAGC	1 cut(s)	145
MaeI	CTAG	1 cut(s)	29
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MboII	GAAGA	1 cut(s)	140
MmeI	TCCRAC	1 cut(s)	103
MseI	TTAA	1 cut(s)	140
NdeII	GATC	1 cut(s)	25
PkrI	GCNGC	1 cut(s)	160
SaqAI	TTAA	1 cut(s)	140
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	1 cut(s)	25
SetI	ASST	2 cut(s)	97, 113
SgeI	CNNG	5 cut(s)	41, 61, 100, 104, 196
SspMI	CTAG	1 cut(s)	29
TaaI	ACNGT	1 cut(s)	22
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TseI	GCWGC	1 cut(s)	158
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.