MD02G1189200.v1.1

Phytosulfokines

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0011726
Physical Location & Seq
Reverse (-)
17279050 .. 17279779
730 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1189200.v1.1.491

Sequence Viewer

Length: 303 bp
ATGCCCCTACCCTTTGCATATAGCAGTGGTACAATAACACAGAGAGAAATGGCCGGATCAGTTAAAGCCCTCTTCTTCTTAGTTCTCGTCCTGTGCTCTACTTTATTAGTCTATGCAGCAAGACCAGAACCAGCTTTTTCAGCAGTCAATTATGCAAAAACCCGACTCGAGGGTGTTGAAACAGAACAGGTTGATGAGGTGATGGGTGAGAGCTGTGAAGGAGTTACAGAGGAGGAGTGCTTGATGAGAAGGACTCTGGCTGCTCATGTCGATTACATCTATACACAGAAGCATAATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PSK

Protein Analysis

101

Amino Acids

11.12

Weight (kDa)

4.9

Isoelectric Point (pI)

53.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSK PF06404 29 - 100 3.5e-16 Phytosulfokine precursor protein (PSK)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011726)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22860 AT4G37720
fragaria_vesca FvH4_1g18100
malus_domestica MD02G1189200.v1.1 MD15G1300000.v1.1
prunus_persica Prupe.6G217500_v2.0.a1 Prupe.6G217500_v2.0.a1
pyrus_communis pycom02g15340 pycom15g26260
rosa_chinensis RchiOBHm_Chr2g0108571 RchiOBHm_Chr2g0124661
rosa_multiflora Rmu_sc0007574.1_g000005
rosa_roxburghii Rroxscaffold_2G00135000
rosa_rugosa Rorug02G0154600
rosa_samantha Rh2AG203400 Rh2BG216300 Rh2CG207300 Rh2DG210500
rosa_wichuraiana Rw2G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 64
AcoI YGGCCR 1 cut(s) 51
AfaI GTAC 1 cut(s) 31
AfiI CCNNNNNNNGG 1 cut(s) 169
AgsI TTSAA 1 cut(s) 179
AluBI AGCT 2 cut(s) 134, 213
AluI AGCT 2 cut(s) 134, 213
Alw21I GWGCWC 1 cut(s) 98
AlwI GGATC 1 cut(s) 64
Ama87I CYCGRG 1 cut(s) 167
AoxI GGCC 1 cut(s) 51
ApeKI GCWGC 2 cut(s) 116, 260
AsuHPI GGTGA 2 cut(s) 211, 218
AvaI CYCGRG 1 cut(s) 167
Bbv12I GWGCWC 1 cut(s) 98
BbvI GCAGC 2 cut(s) 128, 247
BccI CCATC 1 cut(s) 196
BisI GCNGC 2 cut(s) 117, 261
BlsI GCNGC 2 cut(s) 118, 262
BmeT110I CYCGRG 1 cut(s) 167
BplI GAGNNNNNCTC 2 cut(s) 238, 270
Bsc4I CCNNNNNNNGG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 169
BseRI GAGGAG 2 cut(s) 245, 248
BseXI GCAGC 2 cut(s) 128, 247
BshFI GGCC 1 cut(s) 53
BsiHKAI GWGCWC 1 cut(s) 98
BsiHKCI CYCGRG 1 cut(s) 167
BsiSI CCGG 1 cut(s) 54
BslI CCNNNNNNNGG 1 cut(s) 169
BsnI GGCC 1 cut(s) 53
BsoBI CYCGRG 1 cut(s) 167
Bsp1286I GDGCHC 1 cut(s) 98
Bsp143I GATC 1 cut(s) 56
BspANI GGCC 1 cut(s) 53
BspPI GGATC 1 cut(s) 64
BssMI GATC 1 cut(s) 56
Bst6I CTCTTC 1 cut(s) 77
BstDEI CTNAG 1 cut(s) 79
BstKTI GATC 1 cut(s) 59
BstMBI GATC 1 cut(s) 56
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstV1I GCAGC 2 cut(s) 128, 247
BsuRI GGCC 1 cut(s) 53
BtsI GCAGTG 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 31
Csp6I GTAC 1 cut(s) 30
CviAII CATG 1 cut(s) 266
CviJI RGCY 5 cut(s) 53, 68, 134, 213, 260
CviKI_1 RGCY 5 cut(s) 53, 68, 134, 213, 260
CviQI GTAC 1 cut(s) 30
DdeI CTNAG 1 cut(s) 79
DpnI GATC 1 cut(s) 58
DpnII GATC 1 cut(s) 56
EaeI YGGCCR 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
Eco88I CYCGRG 1 cut(s) 167
FaeI CATG 1 cut(s) 269
FaiI YATR 7 cut(s) 19, 21, 114, 153, 267, 282, 294
FatI CATG 1 cut(s) 265
Fnu4HI GCNGC 2 cut(s) 117, 261
Fsp4HI GCNGC 2 cut(s) 117, 261
GluI GCNGC 2 cut(s) 117, 261
HaeIII GGCC 1 cut(s) 53
HapII CCGG 1 cut(s) 54
Hin1II CATG 1 cut(s) 269
HinfI GANTC 2 cut(s) 165, 253
HpaII CCGG 1 cut(s) 54
HphI GGTGA 2 cut(s) 211, 218
HpyAV CCTTC 2 cut(s) 212, 243
HpyCH4V TGCA 3 cut(s) 17, 116, 155
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 1 cut(s) 79
Hsp92II CATG 1 cut(s) 269
Kzo9I GATC 1 cut(s) 56
LpnPI CCDG 6 cut(s) 67, 104, 138, 144, 173, 242
Lsp1109I GCAGC 2 cut(s) 128, 247
MaeIII GTNAC 1 cut(s) 223
MalI GATC 1 cut(s) 58
MboI GATC 1 cut(s) 56
MboII GAAGA 2 cut(s) 64, 67
MhlI GDGCHC 1 cut(s) 98
MluCI AATT 1 cut(s) 148
MlyI GAGTC 2 cut(s) 159, 247
MnlI CCTC 5 cut(s) 80, 163, 190, 223, 226
MseI TTAA 1 cut(s) 63
MspI CCGG 1 cut(s) 54
MwoI GCNNNNNNNGC 1 cut(s) 140
NdeII GATC 1 cut(s) 56
NlaIII CATG 1 cut(s) 269
PaeR7I CTCGAG 1 cut(s) 167
PkrI GCNGC 2 cut(s) 118, 262
PleI GAGTC 2 cut(s) 159, 247
PpsI GAGTC 2 cut(s) 159, 247
PspXI VCTCGAGB 1 cut(s) 167
RsaI GTAC 1 cut(s) 31
RsaNI GTAC 1 cut(s) 30
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 2 cut(s) 117, 261
Sau3AI GATC 1 cut(s) 56
SchI GAGTC 2 cut(s) 159, 247
SduI GDGCHC 1 cut(s) 98
SetI ASST 4 cut(s) 136, 192, 201, 215
Sfr274I CTCGAG 1 cut(s) 167
SlaI CTCGAG 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 1 cut(s) 148
TaqI TCGA 2 cut(s) 168, 270
TasI AATT 1 cut(s) 148
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 1 cut(s) 31
TseI GCWGC 2 cut(s) 116, 260
TspRI CASTG 1 cut(s) 31
XhoI CTCGAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.