AT2G23755

Transmembrane family 220, helix

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013562
Physical Location & Seq
Reverse (-)
10102787 .. 10104050
1264 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G23755.1

Sequence Viewer

Length: 453 bp
ATGGCAAAACCCAGAAATCTTTTTAGGGTTTGCTCTCTTCTAATGGCGTTTTTATTTGCTTACTCTGCTTCTGTCCAGCTTAATGATCCTGATTGGTACTTTTGGTTTCCACTGTACACACTTGCTTGTGTAGTTAATCTAATAAACTACAGAAGAAGAATCAAACTAATGATGATGAGAACAGCTCTTAGCTTGGGTGTGTTCTTGTTGGTTAAAGTTATTGCAGAGGATGTAATAACCGAGAAAGTTGGAGTCTTGTCTTTAGATCTTACTCATAGAGTTGTTAGAGAAAAGATTGGAAGTGGTTTAGTAATAGCTTCCATGGTTCTGCAACTACAAGCTTCTTCTTCTTCTTCAAAAACCATTGACTTTGGGATGGTTGCAACTGTAATCTTTGGCTATGGACTTCCCTTTTGGTTTTTCACAATTGAGAAAGGAGAGATCAAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM220

Protein Analysis

150

Amino Acids

17.01

Weight (kDa)

9.55

Isoelectric Point (pI)

31.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM220 PF15071 18 - 112 3.6e-19 Transmembrane family 220, helix
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013562)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23755
fragaria_vesca FvH4_1g14340 FvH4_1g14340 FvH4_1g14340
malus_domestica MD15G1271500.v1.1
prunus_persica Prupe.7G146700_v2.0.a1 Prupe.7G146700_v2.0.a1
pyrus_communis pycom15g23550
rosa_chinensis RchiOBHm_Chr2g0103011
rosa_laevigata RLG00000017200
rosa_multiflora Rmu_sc0000388.1_g000018
rosa_roxburghii Rroxscaffold_2G00140000
rosa_rugosa Rorug02G0111400
rosa_samantha Rh2AG159600 Rh2BG166100 Rh2CG166300 Rh2DG165000
rosa_wichuraiana Rw2G012470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 80
AfaI GTAC 2 cut(s) 98, 116
AgsI TTSAA 1 cut(s) 357
AluBI AGCT 5 cut(s) 79, 185, 192, 317, 341
AluI AGCT 5 cut(s) 79, 185, 192, 317, 341
AlwI GGATC 1 cut(s) 80
ArsI GACNNNNNNTTYG 2 cut(s) 396, 428
BccI CCATC 1 cut(s) 370
BfmI CTRYAG 1 cut(s) 148
BglII AGATCT 1 cut(s) 265
BplI GAGNNNNNCTC 2 cut(s) 169, 201
BsaJI CCNNGG 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 321
BseGI GGATG 2 cut(s) 235, 381
Bsp1407I TGTACA 1 cut(s) 114
Bsp143I GATC 3 cut(s) 85, 265, 441
Bsp19I CCATGG 1 cut(s) 321
BspPI GGATC 1 cut(s) 80
BsrGI TGTACA 1 cut(s) 114
BssECI CCNNGG 1 cut(s) 321
BssMI GATC 3 cut(s) 85, 265, 441
BssT1I CCWWGG 1 cut(s) 321
Bst4CI ACNGT 2 cut(s) 114, 388
Bst6I CTCTTC 1 cut(s) 42
BstAUI TGTACA 1 cut(s) 114
BstDEI CTNAG 1 cut(s) 188
BstDSI CCRYGG 1 cut(s) 321
BstF5I GGATG 2 cut(s) 235, 381
BstKTI GATC 3 cut(s) 88, 268, 444
BstMBI GATC 3 cut(s) 85, 265, 441
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstSFI CTRYAG 1 cut(s) 148
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BtgI CCRYGG 1 cut(s) 321
BtsCI GGATG 2 cut(s) 235, 381
BtsIMutI CAGTG 1 cut(s) 110
Csp6I GTAC 2 cut(s) 97, 115
CviAII CATG 1 cut(s) 322
CviJI RGCY 6 cut(s) 79, 185, 192, 317, 341, 399
CviKI_1 RGCY 6 cut(s) 79, 185, 192, 317, 341, 399
CviQI GTAC 2 cut(s) 97, 115
DdeI CTNAG 1 cut(s) 188
DpnI GATC 3 cut(s) 87, 267, 443
DpnII GATC 3 cut(s) 85, 265, 441
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco130I CCWWGG 1 cut(s) 321
EcoT14I CCWWGG 1 cut(s) 321
ErhI CCWWGG 1 cut(s) 321
FaeI CATG 1 cut(s) 325
FaiI YATR 3 cut(s) 276, 323, 402
FatI CATG 1 cut(s) 321
FokI GGATG 2 cut(s) 242, 388
Hin1II CATG 1 cut(s) 325
HindIII AAGCTT 1 cut(s) 339
HinfI GANTC 2 cut(s) 159, 252
Hpy166II GTNNAC 1 cut(s) 117
Hpy188III TCNNGA 2 cut(s) 89, 445
Hpy8I GTNNAC 1 cut(s) 117
HpyCH4III ACNGT 2 cut(s) 114, 388
HpyCH4V TGCA 3 cut(s) 224, 331, 383
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 1 cut(s) 188
Hsp92II CATG 1 cut(s) 325
Kzo9I GATC 3 cut(s) 85, 265, 441
LpnPI CCDG 3 cut(s) 25, 89, 102
MalI GATC 3 cut(s) 87, 267, 443
MboI GATC 3 cut(s) 85, 265, 441
MboII GAAGA 7 cut(s) 29, 165, 168, 336, 339, 342, 345
MfeI CAATTG 1 cut(s) 426
MflI RGATCY 1 cut(s) 265
MluCI AATT 1 cut(s) 426
MlyI GAGTC 1 cut(s) 261
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 1 cut(s) 220
MseI TTAA 3 cut(s) 81, 135, 213
MunI CAATTG 1 cut(s) 426
MwoI GCNNNNNNNGC 1 cut(s) 65
NcoI CCATGG 1 cut(s) 321
NdeII GATC 3 cut(s) 85, 265, 441
NlaIII CATG 1 cut(s) 325
PfeI GAWTC 1 cut(s) 159
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
PsuI RGATCY 1 cut(s) 265
RsaI GTAC 2 cut(s) 98, 116
RsaNI GTAC 2 cut(s) 97, 115
SaqAI TTAA 3 cut(s) 81, 135, 213
Sau3AI GATC 3 cut(s) 85, 265, 441
SchI GAGTC 1 cut(s) 261
SetI ASST 5 cut(s) 81, 187, 194, 319, 343
SfcI CTRYAG 1 cut(s) 148
Sse9I AATT 1 cut(s) 426
StyI CCWWGG 1 cut(s) 321
TaaI ACNGT 2 cut(s) 114, 388
TasI AATT 1 cut(s) 426
TatI WGTACW 1 cut(s) 114
TfiI GAWTC 1 cut(s) 159
Tru1I TTAA 3 cut(s) 81, 135, 213
Tru9I TTAA 3 cut(s) 81, 135, 213
TscAI CASTG 1 cut(s) 117
TspRI CASTG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.