Rroxscaffold_2G00140000

Transmembrane family 220, helix

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0013562
Physical Location & Seq
Reverse (-)
78255022 .. 78255685
664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00140000.1

Sequence Viewer

Length: 483 bp
ATGGCAACACCCAGCAAGCTATACACCTTGTGTTCTCTACTAATGGCAGCACTATTTGCTTACTCAGCTGCTGTTCAATTAAATGACCCTGATTGGTACTTTTGGTTTCCTCTTTATGCTGTTGCTTGCGTTGTAAATCTAGTGAACTGGGCTACCACATCCAAAAAAATCAACCAATTTTCTGAGGCAGCACTATGGCTTGGAATGTTTCTATTTATCAAGGCTGTAGCTGAAGATTTTGTAAATGGTATATCTGGGTTTTGCTCACTGGATTTGAGTGAGAGAGTAATCAGGGAGAAGATAGGAAGTGGATTAGTCATAATCTCTATGGTTTTGCAGTTGATGGCATCATTATCATCACCAGAAGCTCCCACACAGAAAAGGCCAAGATATGTTGAATACGGCATGGGAATCCTGGTGGGGTTTAGTTATGGACTCCCATTTGCGTTCTTTGTGGTCCTAAAAGGTGAAATGAAGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM220

Protein Analysis

160

Amino Acids

17.81

Weight (kDa)

7.64

Isoelectric Point (pI)

26.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM220 PF15071 18 - 114 8.6e-19 Transmembrane family 220, helix
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013562)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23755
fragaria_vesca FvH4_1g14340 FvH4_1g14340 FvH4_1g14340
malus_domestica MD15G1271500.v1.1
prunus_persica Prupe.7G146700_v2.0.a1 Prupe.7G146700_v2.0.a1
pyrus_communis pycom15g23550
rosa_chinensis RchiOBHm_Chr2g0103011
rosa_laevigata RLG00000017200
rosa_multiflora Rmu_sc0000388.1_g000018
rosa_roxburghii Rroxscaffold_2G00140000
rosa_rugosa Rorug02G0111400
rosa_samantha Rh2AG159600 Rh2BG166100 Rh2CG166300 Rh2DG165000
rosa_wichuraiana Rw2G012470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 252
AdeI CACNNNGTG 1 cut(s) 30
AfaI GTAC 1 cut(s) 98
AgsI TTSAA 2 cut(s) 77, 398
AjnI CCWGG 1 cut(s) 414
AluBI AGCT 4 cut(s) 19, 68, 230, 368
AluI AGCT 4 cut(s) 19, 68, 230, 368
AlwNI CAGNNNCTG 1 cut(s) 71
AoxI GGCC 1 cut(s) 383
ApeKI GCWGC 3 cut(s) 47, 68, 188
AspS9I GGNCC 1 cut(s) 457
AsuHPI GGTGA 2 cut(s) 351, 479
AvaII GGWCC 1 cut(s) 457
BbvI GCAGC 3 cut(s) 55, 59, 200
BccI CCATC 1 cut(s) 337
BceAI ACGGC 1 cut(s) 418
BciT130I CCWGG 1 cut(s) 416
BfaI CTAG 1 cut(s) 140
BfmI CTRYAG 1 cut(s) 225
BisI GCNGC 3 cut(s) 48, 69, 189
BlsI GCNGC 3 cut(s) 49, 70, 190
Bme1390I CCNGG 1 cut(s) 416
Bme18I GGWCC 1 cut(s) 457
BmgT120I GGNCC 1 cut(s) 457
BmrFI CCNGG 1 cut(s) 416
BmrI ACTGGG 1 cut(s) 157
BmsI GCATC 1 cut(s) 356
BmuI ACTGGG 1 cut(s) 157
Bse1I ACTGG 2 cut(s) 152, 273
BseBI CCWGG 1 cut(s) 416
BseGI GGATG 1 cut(s) 158
BseMII CTCAG 2 cut(s) 78, 174
BseNI ACTGG 2 cut(s) 152, 273
BseXI GCAGC 3 cut(s) 55, 59, 200
BseYI CCCAGC 1 cut(s) 11
BshFI GGCC 1 cut(s) 385
BsnI GGCC 1 cut(s) 385
BspANI GGCC 1 cut(s) 385
BspCNI CTCAG 2 cut(s) 77, 175
BsrI ACTGG 2 cut(s) 152, 273
Bst2UI CCWGG 1 cut(s) 416
BstAPI GCANNNNNTGC 1 cut(s) 56
BstC8I GCNNGC 2 cut(s) 17, 127
BstDEI CTNAG 2 cut(s) 64, 183
BstF5I GGATG 1 cut(s) 158
BstMWI GCNNNNNNNGC 2 cut(s) 56, 65
BstNI CCWGG 1 cut(s) 416
BstSCI CCNGG 1 cut(s) 414
BstSFI CTRYAG 1 cut(s) 225
BstV1I GCAGC 3 cut(s) 55, 59, 200
BsuRI GGCC 1 cut(s) 385
BtsCI GGATG 1 cut(s) 158
BtsIMutI CAGTG 1 cut(s) 266
Cac8I GCNNGC 2 cut(s) 17, 127
CaiI CAGNNNCTG 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 457
Csp6I GTAC 1 cut(s) 97
CviAII CATG 1 cut(s) 406
CviJI RGCY 8 cut(s) 19, 68, 152, 199, 224, 230, 368, 385
CviKI_1 RGCY 8 cut(s) 19, 68, 152, 199, 224, 230, 368, 385
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 2 cut(s) 64, 183
DraIII CACNNNGTG 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 457
Eco57I CTGAAG 1 cut(s) 252
EcoRII CCWGG 1 cut(s) 414
FaeI CATG 1 cut(s) 409
FaiI YATR 9 cut(s) 22, 117, 196, 251, 320, 329, 393, 407, 432
FatI CATG 1 cut(s) 405
Fnu4HI GCNGC 3 cut(s) 48, 69, 189
FokI GGATG 1 cut(s) 145
Fsp4HI GCNGC 3 cut(s) 48, 69, 189
FspBI CTAG 1 cut(s) 140
GluI GCNGC 3 cut(s) 48, 69, 189
GsaI CCCAGC 1 cut(s) 15
HaeIII GGCC 1 cut(s) 385
Hin1II CATG 1 cut(s) 409
HinfI GANTC 2 cut(s) 411, 435
HphI GGTGA 2 cut(s) 351, 479
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 2 cut(s) 184, 482
Hpy8I GTNNAC 1 cut(s) 145
HpyCH4V TGCA 1 cut(s) 337
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 65
HpyF3I CTNAG 2 cut(s) 64, 183
Hsp92II CATG 1 cut(s) 409
LmnI GCTCC 1 cut(s) 373
LpnPI CCDG 9 cut(s) 25, 102, 133, 240, 254, 277, 375, 401, 428
Lsp1109I GCAGC 3 cut(s) 55, 59, 200
LweI GCATC 1 cut(s) 356
MaeI CTAG 1 cut(s) 140
MboII GAAGA 2 cut(s) 245, 310
MluCI AATT 2 cut(s) 77, 176
MlyI GAGTC 1 cut(s) 429
MnlI CCTC 2 cut(s) 120, 178
MseI TTAA 1 cut(s) 80
MspA1I CMGCKG 1 cut(s) 68
MspR9I CCNGG 1 cut(s) 416
MvaI CCWGG 1 cut(s) 416
MwoI GCNNNNNNNGC 2 cut(s) 56, 65
NlaIII CATG 1 cut(s) 409
PfeI GAWTC 1 cut(s) 411
PkrI GCNGC 3 cut(s) 49, 70, 190
PleI GAGTC 1 cut(s) 429
PpsI GAGTC 1 cut(s) 429
Psp6I CCWGG 1 cut(s) 414
PspFI CCCAGC 1 cut(s) 11
PspGI CCWGG 1 cut(s) 414
PspPI GGNCC 1 cut(s) 457
PstNI CAGNNNCTG 1 cut(s) 71
PvuII CAGCTG 1 cut(s) 68
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
SaqAI TTAA 1 cut(s) 80
SatI GCNGC 3 cut(s) 48, 69, 189
Sau96I GGNCC 1 cut(s) 457
SchI GAGTC 1 cut(s) 429
ScrFI CCNGG 1 cut(s) 416
SetI ASST 6 cut(s) 21, 29, 70, 232, 370, 469
SfaNI GCATC 1 cut(s) 356
SfcI CTRYAG 1 cut(s) 225
SinI GGWCC 1 cut(s) 457
Sse9I AATT 2 cut(s) 77, 176
SspMI CTAG 1 cut(s) 140
StyD4I CCNGG 1 cut(s) 414
TasI AATT 2 cut(s) 77, 176
TfiI GAWTC 1 cut(s) 411
Tru1I TTAA 1 cut(s) 80
Tru9I TTAA 1 cut(s) 80
TscAI CASTG 1 cut(s) 273
TseI GCWGC 3 cut(s) 47, 68, 188
TspRI CASTG 1 cut(s) 273
VpaK11BI GGWCC 1 cut(s) 457
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.