FvH4_1g14340

Transmembrane family 220, helix

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013562
Physical Location & Seq
Forward (+)
7994638 .. 7995660
1023 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g14340.t2

Sequence Viewer

Length: 474 bp
ATGGCAACAGCAAGCAAGCTATACACCTTGTGGTCTCTACTAATGGCAGCACTATTTGCTTACTCAGCTTCTGTTCAATTAAATGACCCTGATTGGTACTTTTGGTTTCCCCTCTATGTTGTTGCTTGTGTTGTAAATCTAATGAATCGGGCTATCTCATCCAAAAGAATCAAGCAATTTGCTGAGGCAGCACTATGGCTTGGAATGTTTCTTTTTTTGAAGGTTGTAGCTGAAAATGGTATATCTGGGTTTTGGTCAGTGGATTTAAGTGAGAGAGTAATCAGGGAGAAGATAGGAAGTGGGTTAGTCATAATCTCTATGGTTTTGCAGTTGATGGCATCATTATCATCATCAGAAGCTCCCACACAGAAAAGGCCAAGATATATTGAATATGGCATGGGAGTCCTGGTGGGGTTTGGCTATGGACTCCCAATTGTCTTCTTTGTGGTCCTAAAAGGTGAAATGAAGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM220

Protein Analysis

158

Amino Acids

17.63

Weight (kDa)

9.27

Isoelectric Point (pI)

27.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM220 PF15071 18 - 111 1.7e-18 Transmembrane family 220, helix
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013562)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23755
fragaria_vesca FvH4_1g14340 FvH4_1g14340 FvH4_1g14340
malus_domestica MD15G1271500.v1.1
prunus_persica Prupe.7G146700_v2.0.a1 Prupe.7G146700_v2.0.a1
pyrus_communis pycom15g23550
rosa_chinensis RchiOBHm_Chr2g0103011
rosa_laevigata RLG00000017200
rosa_multiflora Rmu_sc0000388.1_g000018
rosa_roxburghii Rroxscaffold_2G00140000
rosa_rugosa Rorug02G0111400
rosa_samantha Rh2AG159600 Rh2BG166100 Rh2CG166300 Rh2DG165000
rosa_wichuraiana Rw2G012470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 30
AfaI GTAC 1 cut(s) 98
AgsI TTSAA 3 cut(s) 77, 220, 389
AjnI CCWGG 1 cut(s) 405
AluBI AGCT 4 cut(s) 19, 68, 230, 359
AluI AGCT 4 cut(s) 19, 68, 230, 359
Alw26I GTCTC 1 cut(s) 39
AlwNI CAGNNNCTG 1 cut(s) 71
AoxI GGCC 1 cut(s) 374
ApeKI GCWGC 2 cut(s) 47, 188
AspS9I GGNCC 1 cut(s) 448
AsuHPI GGTGA 1 cut(s) 470
AvaII GGWCC 1 cut(s) 448
BbsI GAAGAC 1 cut(s) 430
BbvCI CCTCAGC 1 cut(s) 183
BbvI GCAGC 2 cut(s) 59, 200
BccI CCATC 1 cut(s) 328
BciT130I CCWGG 1 cut(s) 407
BcoDI GTCTC 1 cut(s) 39
BisI GCNGC 2 cut(s) 48, 189
BlsI GCNGC 2 cut(s) 49, 190
Bme1390I CCNGG 1 cut(s) 407
Bme18I GGWCC 1 cut(s) 448
BmgT120I GGNCC 1 cut(s) 448
BmrFI CCNGG 1 cut(s) 407
BmsI GCATC 1 cut(s) 347
BpiI GAAGAC 1 cut(s) 430
Bpu10I CCTNAGC 1 cut(s) 183
BsaI GGTCTC 1 cut(s) 39
BsaXI ACNNNNNCTCC 2 cut(s) 393, 423
BseBI CCWGG 1 cut(s) 407
BseGI GGATG 1 cut(s) 158
BseMII CTCAG 2 cut(s) 78, 174
BseXI GCAGC 2 cut(s) 59, 200
BshFI GGCC 1 cut(s) 376
BsmAI GTCTC 1 cut(s) 39
BsnI GGCC 1 cut(s) 376
Bso31I GGTCTC 1 cut(s) 39
BspANI GGCC 1 cut(s) 376
BspCNI CTCAG 2 cut(s) 77, 175
BspTNI GGTCTC 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 407
BstAPI GCANNNNNTGC 1 cut(s) 56
BstC8I GCNNGC 2 cut(s) 13, 17
BstDEI CTNAG 2 cut(s) 64, 183
BstF5I GGATG 1 cut(s) 158
BstMAI GTCTC 1 cut(s) 39
BstMWI GCNNNNNNNGC 3 cut(s) 56, 65, 188
BstNI CCWGG 1 cut(s) 407
BstSCI CCNGG 1 cut(s) 405
BstV1I GCAGC 2 cut(s) 59, 200
BstV2I GAAGAC 1 cut(s) 430
BsuRI GGCC 1 cut(s) 376
BtsCI GGATG 1 cut(s) 158
BtsIMutI CAGTG 1 cut(s) 264
Cac8I GCNNGC 2 cut(s) 13, 17
CaiI CAGNNNCTG 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 448
Csp6I GTAC 1 cut(s) 97
CviAII CATG 1 cut(s) 397
CviJI RGCY 8 cut(s) 19, 68, 152, 199, 230, 359, 376, 420
CviKI_1 RGCY 8 cut(s) 19, 68, 152, 199, 230, 359, 376, 420
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 2 cut(s) 64, 183
DraIII CACNNNGTG 1 cut(s) 30
Eco31I GGTCTC 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 448
EcoRII CCWGG 1 cut(s) 405
FaeI CATG 1 cut(s) 400
FatI CATG 1 cut(s) 396
Fnu4HI GCNGC 2 cut(s) 48, 189
FokI GGATG 1 cut(s) 145
Fsp4HI GCNGC 2 cut(s) 48, 189
GluI GCNGC 2 cut(s) 48, 189
HaeIII GGCC 1 cut(s) 376
Hin1II CATG 1 cut(s) 400
HinfI GANTC 4 cut(s) 145, 168, 402, 426
HphI GGTGA 1 cut(s) 470
Hpy188I TCNGA 2 cut(s) 355, 473
HpyAV CCTTC 1 cut(s) 214
HpyCH4V TGCA 1 cut(s) 328
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 65, 188
HpyF3I CTNAG 2 cut(s) 64, 183
Hsp92II CATG 1 cut(s) 400
LmnI GCTCC 1 cut(s) 364
LpnPI CCDG 5 cut(s) 102, 231, 268, 392, 419
Lsp1109I GCAGC 2 cut(s) 59, 200
LweI GCATC 1 cut(s) 347
MboII GAAGA 2 cut(s) 301, 430
MfeI CAATTG 1 cut(s) 432
MluCI AATT 3 cut(s) 77, 176, 432
MlyI GAGTC 2 cut(s) 411, 420
MnlI CCTC 2 cut(s) 122, 178
MseI TTAA 2 cut(s) 80, 266
MspR9I CCNGG 1 cut(s) 407
MunI CAATTG 1 cut(s) 432
MvaI CCWGG 1 cut(s) 407
MwoI GCNNNNNNNGC 3 cut(s) 56, 65, 188
NlaIII CATG 1 cut(s) 400
PfeI GAWTC 2 cut(s) 145, 168
PkrI GCNGC 2 cut(s) 49, 190
PleI GAGTC 2 cut(s) 410, 420
PpsI GAGTC 2 cut(s) 410, 420
Psp6I CCWGG 1 cut(s) 405
PspGI CCWGG 1 cut(s) 405
PspPI GGNCC 1 cut(s) 448
PstNI CAGNNNCTG 1 cut(s) 71
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
SaqAI TTAA 2 cut(s) 80, 266
SatI GCNGC 2 cut(s) 48, 189
Sau96I GGNCC 1 cut(s) 448
SchI GAGTC 2 cut(s) 411, 420
ScrFI CCNGG 1 cut(s) 407
SetI ASST 7 cut(s) 21, 29, 70, 225, 232, 361, 460
SfaNI GCATC 1 cut(s) 347
SinI GGWCC 1 cut(s) 448
Sse9I AATT 3 cut(s) 77, 176, 432
StyD4I CCNGG 1 cut(s) 405
TasI AATT 3 cut(s) 77, 176, 432
TfiI GAWTC 2 cut(s) 145, 168
Tru1I TTAA 2 cut(s) 80, 266
Tru9I TTAA 2 cut(s) 80, 266
TscAI CASTG 1 cut(s) 264
TseI GCWGC 2 cut(s) 47, 188
TspDTI ATGAA 1 cut(s) 158
TspRI CASTG 1 cut(s) 264
VpaK11BI GGWCC 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.