MD15G1271500.v1.1

Transmembrane family 220, helix

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0013562
Physical Location & Seq
Forward (+)
23658467 .. 23659526
1060 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1271500.v1.1.491

Sequence Viewer

Length: 495 bp
ATGGCTGCAATCACCAAGTTATACACCTTGTGCTCTCTTCTAATGGCATCACTATTTGCTTATTCTGCATCTGTGCAGCTAAATGACCCTGATTGGTACTTTTGGTTTCCCCTCTACTTTGGTGCTTGTTTTGTTAATCTGGTGATTTGGGCTGTCTCATCCAAAGCAATCAAACAAGTTGCTGAGGCTGCACTATGGCTTGGAATATTTTTGTTCATCAAAGTCACAGCTGAAAGTGCTTCTCTGAAAGGTGCTTCTGGGTTCTTGTCACTGGATTTAAGTGAGAGAGTTATTAGGGAAAAAGTAGGAAGTGGGTTGGTAATAATCTCCATGCTTTTGCAATTGGCAGCATCAAAATCTTCATTAGCAAAAGCTCTCCTACAACAAAGTTATTATCCAACATATGTTAAATATGGAATGGCAGTTTTGGTGGGATTCAGTTTTGGACTTCCTTTTGTCTTCTTTGTGGTCCAAAAAGGTGAAATGAAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM220

Protein Analysis

165

Amino Acids

18.06

Weight (kDa)

9.23

Isoelectric Point (pI)

24.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM220 PF15071 18 - 115 1.9e-17 Transmembrane family 220, helix
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013562)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23755
fragaria_vesca FvH4_1g14340 FvH4_1g14340 FvH4_1g14340
malus_domestica MD15G1271500.v1.1
prunus_persica Prupe.7G146700_v2.0.a1 Prupe.7G146700_v2.0.a1
pyrus_communis pycom15g23550
rosa_chinensis RchiOBHm_Chr2g0103011
rosa_laevigata RLG00000017200
rosa_multiflora Rmu_sc0000388.1_g000018
rosa_roxburghii Rroxscaffold_2G00140000
rosa_rugosa Rorug02G0111400
rosa_samantha Rh2AG159600 Rh2BG166100 Rh2CG166300 Rh2DG165000
rosa_wichuraiana Rw2G012470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 30
AfaI GTAC 1 cut(s) 98
AluBI AGCT 3 cut(s) 79, 230, 374
AluI AGCT 3 cut(s) 79, 230, 374
Alw21I GWGCWC 1 cut(s) 35
Alw26I GTCTC 1 cut(s) 160
ApeKI GCWGC 4 cut(s) 5, 76, 188, 347
AspS9I GGNCC 1 cut(s) 469
AsuHPI GGTGA 3 cut(s) 4, 154, 491
AvaII GGWCC 1 cut(s) 469
BbsI GAAGAC 1 cut(s) 451
Bbv12I GWGCWC 1 cut(s) 35
BbvCI CCTCAGC 1 cut(s) 183
BbvI GCAGC 3 cut(s) 88, 175, 359
BcoDI GTCTC 1 cut(s) 160
BisI GCNGC 4 cut(s) 6, 77, 189, 348
BlsI GCNGC 4 cut(s) 7, 78, 190, 349
Bme18I GGWCC 1 cut(s) 469
BmgT120I GGNCC 1 cut(s) 469
BmsI GCATC 3 cut(s) 56, 77, 359
BpiI GAAGAC 1 cut(s) 451
Bpu10I CCTNAGC 1 cut(s) 183
Bse1I ACTGG 1 cut(s) 276
BseGI GGATG 1 cut(s) 158
BseMII CTCAG 1 cut(s) 174
BseNI ACTGG 1 cut(s) 276
BseXI GCAGC 3 cut(s) 88, 175, 359
BsgI GTGCAG 2 cut(s) 95, 174
BsiHKAI GWGCWC 1 cut(s) 35
BsmAI GTCTC 1 cut(s) 160
Bsp1286I GDGCHC 1 cut(s) 35
BspCNI CTCAG 1 cut(s) 175
BsrI ACTGG 1 cut(s) 276
Bst6I CTCTTC 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 183
BstF5I GGATG 1 cut(s) 158
BstMAI GTCTC 1 cut(s) 160
BstMWI GCNNNNNNNGC 3 cut(s) 65, 188, 236
BstV1I GCAGC 3 cut(s) 88, 175, 359
BstV2I GAAGAC 1 cut(s) 451
BtsCI GGATG 1 cut(s) 158
BtsIMutI CAGTG 1 cut(s) 269
Cfr13I GGNCC 1 cut(s) 469
Csp6I GTAC 1 cut(s) 97
CviAII CATG 1 cut(s) 331
CviJI RGCY 7 cut(s) 5, 79, 152, 188, 199, 230, 374
CviKI_1 RGCY 7 cut(s) 5, 79, 152, 188, 199, 230, 374
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 1 cut(s) 183
DraIII CACNNNGTG 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 469
FaeI CATG 1 cut(s) 334
FaiI YATR 6 cut(s) 22, 196, 332, 403, 405, 414
FatI CATG 1 cut(s) 330
FauNDI CATATG 1 cut(s) 403
Fnu4HI GCNGC 4 cut(s) 6, 77, 189, 348
FokI GGATG 1 cut(s) 145
Fsp4HI GCNGC 4 cut(s) 6, 77, 189, 348
GluI GCNGC 4 cut(s) 6, 77, 189, 348
Hin1II CATG 1 cut(s) 334
HinfI GANTC 1 cut(s) 435
HphI GGTGA 3 cut(s) 4, 154, 491
Hpy188I TCNGA 1 cut(s) 246
HpyCH4V TGCA 5 cut(s) 8, 68, 76, 191, 340
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 188, 236
HpyF3I CTNAG 1 cut(s) 183
Hsp92II CATG 1 cut(s) 334
LpnPI CCDG 4 cut(s) 102, 125, 243, 257
Lsp1109I GCAGC 3 cut(s) 88, 175, 359
LweI GCATC 3 cut(s) 56, 77, 359
MaeIII GTNAC 2 cut(s) 223, 267
MboII GAAGA 3 cut(s) 29, 351, 451
MfeI CAATTG 1 cut(s) 341
MhlI GDGCHC 1 cut(s) 35
MluCI AATT 1 cut(s) 341
MmeI TCCRAC 1 cut(s) 422
MnlI CCTC 2 cut(s) 122, 178
MseI TTAA 3 cut(s) 135, 278, 408
MspA1I CMGCKG 1 cut(s) 230
MunI CAATTG 1 cut(s) 341
MwoI GCNNNNNNNGC 3 cut(s) 65, 188, 236
NdeI CATATG 1 cut(s) 403
NlaIII CATG 1 cut(s) 334
NmuCI GTSAC 2 cut(s) 223, 267
PfeI GAWTC 1 cut(s) 435
PkrI GCNGC 4 cut(s) 7, 78, 190, 349
PspPI GGNCC 1 cut(s) 469
PvuII CAGCTG 1 cut(s) 230
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
SaqAI TTAA 3 cut(s) 135, 278, 408
SatI GCNGC 4 cut(s) 6, 77, 189, 348
Sau96I GGNCC 1 cut(s) 469
SduI GDGCHC 1 cut(s) 35
SetI ASST 6 cut(s) 29, 81, 232, 253, 376, 481
SfaNI GCATC 3 cut(s) 56, 77, 359
SinI GGWCC 1 cut(s) 469
Sse9I AATT 1 cut(s) 341
SspI AATATT 1 cut(s) 207
TasI AATT 1 cut(s) 341
TfiI GAWTC 1 cut(s) 435
Tru1I TTAA 3 cut(s) 135, 278, 408
Tru9I TTAA 3 cut(s) 135, 278, 408
TscAI CASTG 1 cut(s) 276
TseFI GTSAC 2 cut(s) 223, 267
TseI GCWGC 4 cut(s) 5, 76, 188, 347
Tsp45I GTSAC 2 cut(s) 223, 267
TspDTI ATGAA 2 cut(s) 205, 351
TspRI CASTG 1 cut(s) 276
VpaK11BI GGWCC 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.