AT2G23810

Belongs to the tetraspanin (TM4SF) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015286
Physical Location & Seq
Reverse (-)
10135605 .. 10137595
1991 bp
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UTR
Exon/CDS
Intron
AT2G23810.1

Sequence Viewer

Length: 822 bp
ATGGCTCGTTGTAGCAACAATCTCGTAGGGATACTCAATTTCCTAGTATTTCTTCTCTCGATCCCAATCTTAGCTGGTGGAATCTGGCTAAGCCAAAAAGGGTCAACAGAGTGTGAAAGATTCCTAGACAAACCAGTGATTGCTCTTGGTGTTTTCCTTATGGTTGTAGCAATAGCTGGTCTAATAGGTTCATGTTGTAGAGTCACATGGCTTCTTTGGGTTTATCTCTTTGTCATGTTCCTTTTGATTCTCCTTGTGTTCTGTATAACAGTTTTTGCCTTTGTTGTTACTAACAAAGGAGCTGGTGAAGCTATTGAAGGAAAAGGTTATAAAGAGTATAAACTTGGTGATTACTCTACTTGGTTACAGAAACGTGTTGAGAATGGTAAAAATTGGAATAAGATTAGGAGTTGTCTTGTGGAGAGCAAAGTTTGTTCTAAGCTTGAAGCCAAGTTTGTTAATGTTCCTGTCAATAGTTTCTACAAGGAACATCTTACTGCTCTTCAGTCTGGTTGCTGCAAACCTTCAGATGAATGTGGTTTCGAGTACGTAAACCCAACAACCTGGACCAAGAACACAACGGGAACACACACTAATCCAGACTGCCAAACCTGGGACAACGCAAAAGAAAAGCTCTGCTTCGATTGTCAATCTTGTAAAGCGGGTCTACTCGACAACGTCAAAAGCGCTTGGAAGAAAGTTGCAATCGTTAACATCGTCTTCCTTGTCTTCCTCATCATTGTCTACTCTGTTGGTTGCTGTGCTTTCAGGAACAACAAGAGGGATGACAGTTATTCCCGTACCTACGGATATAAGCCTTGA

Protein Analysis

273

Amino Acids

30.66

Weight (kDa)

8.86

Isoelectric Point (pI)

29.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tetraspanin PF00335 6 - 255 4.9e-39 Tetraspanin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015286)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23810
fragaria_vesca FvH4_4g10210
malus_domestica MD13G1273700.v1.1 MD16G1261500.v1.1
prunus_persica Prupe.1G098200_v2.0.a1
pyrus_communis pycom13g28840 pycom16g22990
rosa_chinensis RchiOBHm_Chr4g0405031
rosa_laevigata RLG00000008883
rosa_multiflora Rmu_ssc0000127.1_g000047
rosa_roxburghii Rroxscaffold_5G00349210
rosa_rugosa Rorug04G0052400
rosa_samantha Rh4AG127300 Rh4BG121200 Rh4CG135300
rosa_wichuraiana Rw4G010320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 330
AccI GTMKAC 2 cut(s) 667, 744
AciI CCGC 1 cut(s) 662
AclWI GGATC 1 cut(s) 55
AcuI CTGAAG 2 cut(s) 488, 510
AfaI GTAC 2 cut(s) 548, 802
AfeI AGCGCT 1 cut(s) 688
AfiI CCNNNNNNNGG 1 cut(s) 613
AflIII ACRYGT 1 cut(s) 373
AgsI TTSAA 2 cut(s) 317, 446
AjnI CCWGG 2 cut(s) 563, 611
AluBI AGCT 6 cut(s) 74, 176, 302, 311, 442, 634
AluI AGCT 6 cut(s) 74, 176, 302, 311, 442, 634
AlwI GGATC 1 cut(s) 55
Aor51HI AGCGCT 1 cut(s) 688
ApeKI GCWGC 1 cut(s) 516
AspLEI GCGC 1 cut(s) 689
AspS9I GGNCC 1 cut(s) 567
AsuHPI GGTGA 2 cut(s) 317, 359
AvaII GGWCC 1 cut(s) 567
BbsI GAAGAC 2 cut(s) 712, 721
BbvI GCAGC 1 cut(s) 503
BcgI CGANNNNNNTGC 2 cut(s) 4, 38
BciT130I CCWGG 2 cut(s) 565, 613
BciVI GTATCC 1 cut(s) 24
BfaI CTAG 2 cut(s) 44, 125
BfoI RGCGCY 1 cut(s) 690
BfuI GTATCC 1 cut(s) 24
BisI GCNGC 1 cut(s) 517
BlpI GCTNAGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 518
Bme1390I CCNGG 2 cut(s) 565, 613
Bme18I GGWCC 1 cut(s) 567
BmgT120I GGNCC 1 cut(s) 567
BmrFI CCNGG 2 cut(s) 565, 613
BpiI GAAGAC 2 cut(s) 712, 721
Bpu1102I GCTNAGC 1 cut(s) 89
BsaAI YACGTR 1 cut(s) 550
BsaBI GATNNNNATC 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 612
Bsc4I CCNNNNNNNGG 1 cut(s) 613
Bse1I ACTGG 1 cut(s) 134
Bse8I GATNNNNATC 1 cut(s) 65
BseBI CCWGG 2 cut(s) 565, 613
BseDI CCNNGG 1 cut(s) 612
BseGI GGATG 1 cut(s) 790
BseJI GATNNNNATC 1 cut(s) 65
BseLI CCNNNNNNNGG 1 cut(s) 613
BseNI ACTGG 1 cut(s) 134
BseXI GCAGC 1 cut(s) 503
BslFI GGGAC 1 cut(s) 629
BslI CCNNNNNNNGG 1 cut(s) 613
BsmFI GGGAC 1 cut(s) 629
Bsp143I GATC 1 cut(s) 60
Bsp1720I GCTNAGC 1 cut(s) 89
BspACI CCGC 1 cut(s) 662
BspPI GGATC 1 cut(s) 55
BspQI GCTCTTC 1 cut(s) 507
BsrI ACTGG 1 cut(s) 134
BssECI CCNNGG 1 cut(s) 612
BssMI GATC 1 cut(s) 60
Bst2UI CCWGG 2 cut(s) 565, 613
Bst4CI ACNGT 2 cut(s) 271, 791
Bst6I CTCTTC 1 cut(s) 507
BstBAI YACGTR 1 cut(s) 550
BstDEI CTNAG 3 cut(s) 70, 89, 438
BstF5I GGATG 1 cut(s) 790
BstH2I RGCGCY 1 cut(s) 690
BstHHI GCGC 1 cut(s) 689
BstKTI GATC 1 cut(s) 63
BstMBI GATC 1 cut(s) 60
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstNI CCWGG 2 cut(s) 565, 613
BstSCI CCNGG 2 cut(s) 563, 611
BstSNI TACGTA 1 cut(s) 550
BstV1I GCAGC 1 cut(s) 503
BstV2I GAAGAC 2 cut(s) 712, 721
BstXI CCANNNNNNTGG 1 cut(s) 564
BsuI GTATCC 1 cut(s) 24
BtsCI GGATG 1 cut(s) 790
BtsIMutI CAGTG 1 cut(s) 141
CfoI GCGC 1 cut(s) 689
Cfr13I GGNCC 1 cut(s) 567
Csp6I GTAC 2 cut(s) 547, 801
CviAII CATG 3 cut(s) 192, 207, 235
CviQI GTAC 2 cut(s) 547, 801
DdeI CTNAG 3 cut(s) 70, 89, 438
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
Eam1104I CTCTTC 1 cut(s) 507
EarI CTCTTC 1 cut(s) 507
Eco105I TACGTA 1 cut(s) 550
Eco47I GGWCC 1 cut(s) 567
Eco47III AGCGCT 1 cut(s) 688
Eco57I CTGAAG 2 cut(s) 488, 510
EcoRII CCWGG 2 cut(s) 563, 611
FaeI CATG 3 cut(s) 195, 210, 238
FaiI YATR 8 cut(s) 161, 193, 208, 236, 266, 330, 339, 813
FalI AAGNNNNNCTT 2 cut(s) 623, 655
FaqI GGGAC 1 cut(s) 629
FatI CATG 3 cut(s) 191, 206, 234
FauI CCCGC 1 cut(s) 655
FblI GTMKAC 2 cut(s) 667, 744
Fnu4HI GCNGC 1 cut(s) 517
FokI GGATG 1 cut(s) 797
Fsp4HI GCNGC 1 cut(s) 517
FspBI CTAG 2 cut(s) 44, 125
GlaI GCGC 1 cut(s) 688
GluI GCNGC 1 cut(s) 517
HaeII RGCGCY 1 cut(s) 690
HhaI GCGC 1 cut(s) 689
Hin1II CATG 3 cut(s) 195, 210, 238
Hin6I GCGC 1 cut(s) 687
HinP1I GCGC 1 cut(s) 687
HincII GTYRAC 2 cut(s) 105, 712
HindII GTYRAC 2 cut(s) 105, 712
HindIII AAGCTT 1 cut(s) 440
HinfI GANTC 4 cut(s) 81, 120, 201, 247
HpaI GTTAAC 1 cut(s) 712
HphI GGTGA 2 cut(s) 317, 359
Hpy166II GTNNAC 5 cut(s) 105, 553, 668, 712, 745
Hpy188I TCNGA 1 cut(s) 529
Hpy188III TCNNGA 3 cut(s) 58, 599, 769
Hpy8I GTNNAC 5 cut(s) 105, 553, 668, 712, 745
HpyAV CCTTC 2 cut(s) 311, 534
HpyCH4III ACNGT 2 cut(s) 271, 791
HpyCH4IV ACGT 3 cut(s) 373, 549, 678
HpyCH4V TGCA 2 cut(s) 519, 704
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
HpyF3I CTNAG 3 cut(s) 70, 89, 438
HpySE526I ACGT 3 cut(s) 373, 549, 678
Hsp92II CATG 3 cut(s) 195, 210, 238
HspAI GCGC 1 cut(s) 687
KspAI GTTAAC 1 cut(s) 712
Kzo9I GATC 1 cut(s) 60
LguI GCTCTTC 1 cut(s) 507
LmnI GCTCC 1 cut(s) 299
Lsp1109I GCAGC 1 cut(s) 503
MaeI CTAG 2 cut(s) 44, 125
MaeII ACGT 3 cut(s) 373, 549, 678
MaeIII GTNAC 3 cut(s) 202, 286, 363
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 5 cut(s) 44, 494, 706, 712, 721
MluCI AATT 2 cut(s) 37, 391
MlyI GAGTC 1 cut(s) 210
MnlI CCTC 2 cut(s) 743, 774
MseI TTAA 2 cut(s) 459, 711
MspR9I CCNGG 2 cut(s) 565, 613
MvaI CCWGG 2 cut(s) 565, 613
MwoI GCNNNNNNNGC 1 cut(s) 308
NdeII GATC 1 cut(s) 60
NlaIII CATG 3 cut(s) 195, 210, 238
NmuCI GTSAC 1 cut(s) 202
PciSI GCTCTTC 1 cut(s) 507
PcsI WCGNNNNNNNCGW 1 cut(s) 714
PfeI GAWTC 3 cut(s) 81, 120, 247
PflFI GACNNNGTC 1 cut(s) 677
PkrI GCNGC 1 cut(s) 518
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
Ppu21I YACGTR 1 cut(s) 550
PsiI TTATAA 1 cut(s) 330
Psp6I CCWGG 2 cut(s) 563, 611
PspGI CCWGG 2 cut(s) 563, 611
PspPI GGNCC 1 cut(s) 567
PsyI GACNNNGTC 1 cut(s) 677
RsaI GTAC 2 cut(s) 548, 802
RsaNI GTAC 2 cut(s) 547, 801
SapI GCTCTTC 1 cut(s) 507
SaqAI TTAA 2 cut(s) 459, 711
SatI GCNGC 1 cut(s) 517
Sau3AI GATC 1 cut(s) 60
Sau96I GGNCC 1 cut(s) 567
SchI GAGTC 1 cut(s) 210
ScrFI CCNGG 2 cut(s) 565, 613
SinI GGWCC 1 cut(s) 567
SnaBI TACGTA 1 cut(s) 550
Sse9I AATT 2 cut(s) 37, 391
SsiI CCGC 1 cut(s) 662
SspMI CTAG 2 cut(s) 44, 125
StyD4I CCNGG 2 cut(s) 563, 611
TaaI ACNGT 2 cut(s) 271, 791
TaiI ACGT 3 cut(s) 376, 552, 681
TaqI TCGA 4 cut(s) 59, 543, 642, 672
TasI AATT 2 cut(s) 37, 391
TfiI GAWTC 3 cut(s) 81, 120, 247
Tru1I TTAA 2 cut(s) 459, 711
Tru9I TTAA 2 cut(s) 459, 711
TscAI CASTG 1 cut(s) 141
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 1 cut(s) 516
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 2 cut(s) 180, 546
TspGWI ACGGA 1 cut(s) 822
TspRI CASTG 1 cut(s) 141
Tth111I GACNNNGTC 1 cut(s) 677
VpaK11BI GGWCC 1 cut(s) 567
XmiI GTMKAC 2 cut(s) 667, 744
XspI CTAG 2 cut(s) 44, 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.