Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015286

Physical Location & Seq

Genomic Coordinates Reverse (-)

7855032 .. 7857762

Gene Structure 2731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G098200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGAAGATCAGCAACAACCTCGTCGGGCTTCTCAACTTCATCACCTTCCTCCTCTCAATCCCGATCGTCGTAGCCGGAGTGTGGCTGAGCAAGCAAGGCAGCACCGAGTGCGAGAAGTTTCTGGACAAGCCCGTCATCATTCTCGGCGTTTTCCTCATGCTGGTCTCGCTCGCCGGCCTCATCGGCGCCTGCTGCAGAGTCTCGTGGCTCCTCTGGGTCTACCTCCTCGTCATGTTCCTCCTCATCGTCGTCCTCTTCGCTTTCACCATCTTCGCCTTCGCCGTCACCAACAAAGGCGCCGGCAAAGTGCTTTCCGATAAAGGGTACAAGGAGTACAGGCTTGGGGACTATTCTAACTGGCTGCAGAAGAGGGTCAGCAGCACCAAGAACTGGAATAAGATCAAGAGTTGCCTTATTGATAGCAAGGTCTGCTCTACGTTTCAGGACAAGTATGTCAACGATACCATCTCGGAGTTGTATAAGGAGAACTTGTCTGCGCTTCAGGCCGGTTGCTGTAAGCCATCAGATGATTGTGGATTTACCTATGTGAGCCCGACTAACTGGAACAACAACGGTAACACCAGCTCTTCCAACCCCGACTGCAACACATGGGCGAATGATGCAAGGGTTCTGTGCTTCAACTGCCAGTCATGCAAGGCTGGACTGCTGGACAACATAAAAAGTAACTGGAAGAAGACGGCTGTCGTCAACATTGTATTCTTGATCTTCCTCATTGTTGTGTACTCTGTTGGATGCTGCGCATTCAGGAACACCAGGAGGGACAATGAATATTGGAAGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0012505 GO:0016020 GO:0030054 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

268

Amino Acids

30.0

Weight (kDa)

8.95

Isoelectric Point (pI)

26.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23810
fragaria_vesca	FvH4_4g10210
malus_domestica	MD13G1273700.v1.1 MD16G1261500.v1.1
prunus_persica	Prupe.1G098200_v2.0.a1
pyrus_communis	pycom13g28840 pycom16g22990
rosa_chinensis	RchiOBHm_Chr4g0405031
rosa_laevigata	RLG00000008883
rosa_multiflora	Rmu_ssc0000127.1_g000047
rosa_roxburghii	Rroxscaffold_5G00349210
rosa_rugosa	Rorug04G0052400
rosa_samantha	Rh4AG127300 Rh4BG121200 Rh4CG135300
rosa_wichuraiana	Rw4G010320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	131, 452
Acc16I	TGCGCA	1 cut(s)	760
AccB1I	GGYRCC	2 cut(s)	185, 296
AccB7I	CCANNNNNTGG	1 cut(s)	390
AccI	GTMKAC	1 cut(s)	219
AcuI	CTGAAG	1 cut(s)	485
AcyI	GRCGYC	2 cut(s)	186, 297
AdeI	CACNNNGTG	1 cut(s)	108
AfaI	GTAC	3 cut(s)	326, 335, 743
AfiI	CCNNNNNNNGG	4 cut(s)	81, 160, 321, 390
AgsI	TTSAA	1 cut(s)	640
AjnI	CCWGG	1 cut(s)	773
AluBI	AGCT	1 cut(s)	585
AluI	AGCT	1 cut(s)	585
Alw26I	GTCTC	2 cut(s)	169, 205
AoxI	GGCC	2 cut(s)	175, 504
ApeKI	GCWGC	5 cut(s)	99, 192, 361, 378, 756
AspLEI	GCGC	4 cut(s)	188, 299, 499, 761
AsuHPI	GGTGA	3 cut(s)	34, 256, 277
BanI	GGYRCC	2 cut(s)	185, 296
BanII	GRGCYC	1 cut(s)	554
BauI	CACGAG	1 cut(s)	202
BbsI	GAAGAC	1 cut(s)	701
BbvI	GCAGC	5 cut(s)	111, 179, 348, 390, 743
BccI	CCATC	3 cut(s)	275, 473, 529
BceAI	ACGGC	2 cut(s)	266, 714
BcgI	CGANNNNNNTGC	1 cut(s)	35
BciT130I	CCWGG	1 cut(s)	775
BcoDI	GTCTC	2 cut(s)	169, 205
BfmI	CTRYAG	2 cut(s)	193, 362
BfoI	RGCGCY	2 cut(s)	189, 300
BglI	GCCNNNNNGGC	1 cut(s)	183
BisI	GCNGC	5 cut(s)	100, 193, 362, 379, 757
BlpI	GCTNAGC	1 cut(s)	86
BlsI	GCNGC	5 cut(s)	101, 194, 363, 380, 758
Bme1390I	CCNGG	1 cut(s)	775
BmiI	GGNNCC	3 cut(s)	187, 209, 298
BmrFI	CCNGG	1 cut(s)	775
BmsI	GCATC	2 cut(s)	610, 743
BoxI	GACNNNNGTC	1 cut(s)	701
BpiI	GAAGAC	1 cut(s)	701
Bpu1102I	GCTNAGC	1 cut(s)	86
BsaHI	GRCGYC	2 cut(s)	186, 297
BsaI	GGTCTC	1 cut(s)	169
BsaXI	ACNNNNNCTCC	2 cut(s)	476, 506
Bsc4I	CCNNNNNNNGG	4 cut(s)	81, 160, 321, 390
Bse118I	RCCGGY	3 cut(s)	173, 299, 506
Bse1I	ACTGG	5 cut(s)	362, 395, 566, 646, 692
BseBI	CCWGG	1 cut(s)	775
BseGI	GGATG	1 cut(s)	758
BseLI	CCNNNNNNNGG	4 cut(s)	81, 160, 321, 390
BseMII	CTCAG	1 cut(s)	77
BseNI	ACTGG	5 cut(s)	362, 395, 566, 646, 692
BseRI	GAGGAG	4 cut(s)	41, 200, 215, 230
BseXI	GCAGC	5 cut(s)	111, 179, 348, 390, 743
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	2 cut(s)	177, 506
BshNI	GGYRCC	2 cut(s)	185, 296
BsiEI	CGRYCG	1 cut(s)	66
BsiSI	CCGG	4 cut(s)	75, 174, 300, 507
BslFI	GGGAC	2 cut(s)	359, 794
BslI	CCNNNNNNNGG	4 cut(s)	81, 160, 321, 390
BsmAI	GTCTC	2 cut(s)	169, 205
BsmFI	GGGAC	2 cut(s)	359, 794
BsmI	GAATGC	1 cut(s)	761
BsnI	GGCC	2 cut(s)	177, 506
Bso31I	GGTCTC	1 cut(s)	169
Bsp1286I	GDGCHC	1 cut(s)	554
Bsp143I	GATC	4 cut(s)	6, 63, 399, 723
Bsp1720I	GCTNAGC	1 cut(s)	86
BspANI	GGCC	2 cut(s)	177, 506
BspCNI	CTCAG	1 cut(s)	78
BspLI	GGNNCC	3 cut(s)	187, 209, 298
BspMAI	CTGCAG	2 cut(s)	197, 366
BspQI	GCTCTTC	1 cut(s)	592
BspT107I	GGYRCC	2 cut(s)	185, 296
BspTNI	GGTCTC	1 cut(s)	169
BsrFI	RCCGGY	3 cut(s)	173, 299, 506
BsrI	ACTGG	5 cut(s)	362, 395, 566, 646, 692
BssAI	RCCGGY	3 cut(s)	173, 299, 506
BssMI	GATC	4 cut(s)	6, 63, 399, 723
BssNI	GRCGYC	2 cut(s)	186, 297
BssSI	CACGAG	1 cut(s)	202
Bst2BI	CACGAG	1 cut(s)	202
Bst2UI	CCWGG	1 cut(s)	775
Bst4CI	ACNGT	1 cut(s)	575
Bst6I	CTCTTC	3 cut(s)	260, 362, 592
BstACI	GRCGYC	2 cut(s)	186, 297
BstAPI	GCANNNNNTGC	2 cut(s)	108, 429
BstC8I	GCNNGC	5 cut(s)	92, 171, 175, 190, 301
BstDEI	CTNAG	1 cut(s)	86
BstF5I	GGATG	1 cut(s)	758
BstH2I	RGCGCY	2 cut(s)	189, 300
BstHHI	GCGC	4 cut(s)	188, 299, 499, 761
BstKTI	GATC	4 cut(s)	9, 66, 402, 726
BstMAI	GTCTC	2 cut(s)	169, 205
BstMBI	GATC	4 cut(s)	6, 63, 399, 723
BstMCI	CGRYCG	1 cut(s)	66
BstNI	CCWGG	1 cut(s)	775
BstPAI	GACNNNNGTC	1 cut(s)	701
BstSCI	CCNGG	1 cut(s)	773
BstSFI	CTRYAG	2 cut(s)	193, 362
BstV1I	GCAGC	5 cut(s)	111, 179, 348, 390, 743
BstV2I	GAAGAC	1 cut(s)	701
BsuRI	GGCC	2 cut(s)	177, 506
BtsCI	GGATG	1 cut(s)	758
Cac8I	GCNNGC	5 cut(s)	92, 171, 175, 190, 301
CfoI	GCGC	4 cut(s)	188, 299, 499, 761
Cfr10I	RCCGGY	3 cut(s)	173, 299, 506
Csp6I	GTAC	3 cut(s)	325, 334, 742
CviAII	CATG	4 cut(s)	157, 232, 609, 651
CviQI	GTAC	3 cut(s)	325, 334, 742
DdeI	CTNAG	1 cut(s)	86
DinI	GGCGCC	2 cut(s)	187, 298
DpnI	GATC	4 cut(s)	8, 65, 401, 725
DpnII	GATC	4 cut(s)	6, 63, 399, 723
DraIII	CACNNNGTG	1 cut(s)	108
DrdI	GACNNNNNNGTC	2 cut(s)	131, 452
DseDI	GACNNNNNNGTC	2 cut(s)	131, 452
Eam1104I	CTCTTC	3 cut(s)	260, 362, 592
EarI	CTCTTC	3 cut(s)	260, 362, 592
Eco24I	GRGCYC	1 cut(s)	554
Eco31I	GGTCTC	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	485
EcoRII	CCWGG	1 cut(s)	773
EcoT38I	GRGCYC	1 cut(s)	554
EgeI	GGCGCC	2 cut(s)	187, 298
EheI	GGCGCC	2 cut(s)	187, 298
FaeI	CATG	4 cut(s)	160, 235, 612, 654
FaiI	YATR	8 cut(s)	158, 233, 453, 480, 546, 610, 652, 677
FalI	AAGNNNNNCTT	2 cut(s)	473, 505
FaqI	GGGAC	2 cut(s)	359, 794
FatI	CATG	4 cut(s)	156, 231, 608, 650
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	5 cut(s)	100, 193, 362, 379, 757
FokI	GGATG	1 cut(s)	765
FriOI	GRGCYC	1 cut(s)	554
Fsp4HI	GCNGC	5 cut(s)	100, 193, 362, 379, 757
FspI	TGCGCA	1 cut(s)	760
GlaI	GCGC	4 cut(s)	187, 298, 498, 760
GluI	GCNGC	5 cut(s)	100, 193, 362, 379, 757
HaeII	RGCGCY	2 cut(s)	189, 300
HaeIII	GGCC	2 cut(s)	177, 506
HapII	CCGG	4 cut(s)	75, 174, 300, 507
HhaI	GCGC	4 cut(s)	188, 299, 499, 761
Hin1I	GRCGYC	2 cut(s)	186, 297
Hin1II	CATG	4 cut(s)	160, 235, 612, 654
Hin6I	GCGC	4 cut(s)	186, 297, 497, 759
HinP1I	GCGC	4 cut(s)	186, 297, 497, 759
HincII	GTYRAC	2 cut(s)	457, 709
HindII	GTYRAC	2 cut(s)	457, 709
HinfI	GANTC	1 cut(s)	198
HpaII	CCGG	4 cut(s)	75, 174, 300, 507
HphI	GGTGA	3 cut(s)	34, 256, 277
Hpy166II	GTNNAC	4 cut(s)	220, 457, 709, 742
Hpy188I	TCNGA	3 cut(s)	316, 472, 526
Hpy188III	TCNNGA	6 cut(s)	61, 122, 403, 443, 721, 766
Hpy8I	GTNNAC	4 cut(s)	220, 457, 709, 742
Hpy99I	CGWCG	3 cut(s)	26, 71, 251
HpyAV	CCTTC	2 cut(s)	55, 286
HpyCH4III	ACNGT	1 cut(s)	575
HpyCH4IV	ACGT	1 cut(s)	437
HpyCH4V	TGCA	5 cut(s)	195, 364, 603, 623, 654
HpyF3I	CTNAG	1 cut(s)	86
HpySE526I	ACGT	1 cut(s)	437
Hsp92I	GRCGYC	2 cut(s)	186, 297
Hsp92II	CATG	4 cut(s)	160, 235, 612, 654
HspAI	GCGC	4 cut(s)	186, 297, 497, 759
KasI	GGCGCC	2 cut(s)	185, 296
KroI	GCCGGC	2 cut(s)	173, 299
KroNI	GCCGGC	2 cut(s)	175, 301
Kzo9I	GATC	4 cut(s)	6, 63, 399, 723
LguI	GCTCTTC	1 cut(s)	592
LmnI	GCTCC	1 cut(s)	213
Lsp1109I	GCAGC	5 cut(s)	111, 179, 348, 390, 743
LweI	GCATC	2 cut(s)	610, 743
MaeII	ACGT	1 cut(s)	437
MaeIII	GTNAC	3 cut(s)	283, 575, 683
MalI	GATC	4 cut(s)	8, 65, 401, 725
MboI	GATC	4 cut(s)	6, 63, 399, 723
MboII	GAAGA	8 cut(s)	16, 247, 262, 379, 579, 703, 706, 718
MhlI	GDGCHC	1 cut(s)	554
Mly113I	GGCGCC	2 cut(s)	186, 297
MlyI	GAGTC	1 cut(s)	207
MmeI	TCCRAC	2 cut(s)	615, 730
MroNI	GCCGGC	2 cut(s)	173, 299
MseI	TTAA	1 cut(s)	802
MslI	CAYNNNNRTG	1 cut(s)	737
MspI	CCGG	4 cut(s)	75, 174, 300, 507
MspR9I	CCNGG	1 cut(s)	775
Mva1269I	GAATGC	1 cut(s)	761
MvaI	CCWGG	1 cut(s)	775
NaeI	GCCGGC	2 cut(s)	175, 301
NarI	GGCGCC	2 cut(s)	186, 297
NdeII	GATC	4 cut(s)	6, 63, 399, 723
NgoMIV	GCCGGC	2 cut(s)	173, 299
NlaIII	CATG	4 cut(s)	160, 235, 612, 654
NlaIV	GGNNCC	3 cut(s)	187, 209, 298
NmeAIII	GCCGAG	1 cut(s)	123
NmuCI	GTSAC	1 cut(s)	283
NsbI	TGCGCA	1 cut(s)	760
PciSI	GCTCTTC	1 cut(s)	592
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PctI	GAATGC	1 cut(s)	761
PdiI	GCCGGC	2 cut(s)	175, 301
PflMI	CCANNNNNTGG	1 cut(s)	390
PkrI	GCNGC	5 cut(s)	101, 194, 363, 380, 758
Ple19I	CGATCG	1 cut(s)	66
PleI	GAGTC	1 cut(s)	206
PluTI	GGCGCC	2 cut(s)	189, 300
PpsI	GAGTC	1 cut(s)	206
PshAI	GACNNNNGTC	1 cut(s)	701
Psp6I	CCWGG	1 cut(s)	773
PspGI	CCWGG	1 cut(s)	773
PspN4I	GGNNCC	3 cut(s)	187, 209, 298
PstI	CTGCAG	2 cut(s)	197, 366
PvuI	CGATCG	1 cut(s)	66
RsaI	GTAC	3 cut(s)	326, 335, 743
RsaNI	GTAC	3 cut(s)	325, 334, 742
RseI	CAYNNNNRTG	1 cut(s)	737
SapI	GCTCTTC	1 cut(s)	592
SaqAI	TTAA	1 cut(s)	802
SatI	GCNGC	5 cut(s)	100, 193, 362, 379, 757
Sau3AI	GATC	4 cut(s)	6, 63, 399, 723
SchI	GAGTC	1 cut(s)	207
ScrFI	CCNGG	1 cut(s)	775
SduI	GDGCHC	1 cut(s)	554
SetI	ASST	7 cut(s)	21, 47, 225, 429, 440, 545, 587
SfaNI	GCATC	2 cut(s)	610, 743
SfcI	CTRYAG	2 cut(s)	193, 362
SfoI	GGCGCC	2 cut(s)	187, 298
SmiMI	CAYNNNNRTG	1 cut(s)	737
SspDI	GGCGCC	2 cut(s)	185, 296
SspI	AATATT	1 cut(s)	791
StyD4I	CCNGG	1 cut(s)	773
TaaI	ACNGT	1 cut(s)	575
TaiI	ACGT	1 cut(s)	440
TatI	WGTACW	2 cut(s)	333, 741
Tru1I	TTAA	1 cut(s)	802
Tru9I	TTAA	1 cut(s)	802
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	5 cut(s)	99, 192, 361, 378, 756
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	3 cut(s)	17, 28, 801
Van91I	CCANNNNNTGG	1 cut(s)	390
XmiI	GTMKAC	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.