Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0015286

Physical Location & Seq

Genomic Coordinates Reverse (-)

13346931 .. 13349634

Gene Structure 2704 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g10210.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGAGGCTCAGCAACAACCTGGTGGGGTTCCTCAACTTCCTGACCTTCCTGCTCTCCATCCCGATGGTCGTCGCCGGCGTATGGCTCAGCAAGCAAGGCGCCACCGAGTGCGAGAAGTTCCTCGACAAGCCGGTCATCATTCTCGGCGTCTTCCTCATGCTGGTCTCCCTCGCCGGCTTCATCGGCGCCTGCTTCCGCGTCTCGTGGCTCCTCTGGGTCTACCTCCTAGTCATGTTCCTCCTCATCGTCGTCCTCTTCGGCTACACCATCTTCGCCTTCGCCATCACCAACAAGGGCGCCGGCAACGTCCTCTCCGGCAAAGGCTACAAGGAGTACAAGCTCGGCGACTACTCTCACTGGCTCCAGAAGAGAGTCAACAGCACCAAGAACTGGAACAAGATCAAGAGCTGCCTCATTGATAGCAAGGTCTGCTCCAATTTCCAGGACAAGTATCTCAATGATACTCTCACCGAGTTCTACGAAGAGAACCTCTCTGCGCTTCAGTCCGGCTGCTGTAAGCCATCAGATGACTGTGGTTTTGCCTATGTAAGTCCCACAGTCTGGACCAAGAATGCTACTTCTTCTACTGTCAACCCTGACTGCAATGAATGGGATAATGATGCAAAGGCTCTGTGCTTCAATTGCCAGTCATGCAAGGCTGGACTGCTTGACAATCTGAAAAGTAACTGGAAAAAGACGGCTGTTGTCAATATTGTCTTCCTTATCTTCCTCATCGTTGTGTATTCCGTAGGGTGCTGTGCATTCAGGAACAACAGGAGGGACAATGAATATTATAAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0012505 GO:0016020 GO:0030054 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

268

Amino Acids

30.17

Weight (kDa)

8.71

Isoelectric Point (pI)

30.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tetraspanin	PF00335	5 - 254	1.1e-38	Tetraspanin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23810
fragaria_vesca	FvH4_4g10210
malus_domestica	MD13G1273700.v1.1 MD16G1261500.v1.1
prunus_persica	Prupe.1G098200_v2.0.a1
pyrus_communis	pycom13g28840 pycom16g22990
rosa_chinensis	RchiOBHm_Chr4g0405031
rosa_laevigata	RLG00000008883
rosa_multiflora	Rmu_ssc0000127.1_g000047
rosa_roxburghii	Rroxscaffold_5G00349210
rosa_rugosa	Rorug04G0052400
rosa_samantha	Rh4AG127300 Rh4BG121200 Rh4CG135300
rosa_wichuraiana	Rw4G010320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	795
AasI	GACNNNNNNGTC	1 cut(s)	131
AccB1I	GGYRCC	3 cut(s)	98, 185, 296
AccB7I	CCANNNNNTGG	2 cut(s)	390, 561
AccI	GTMKAC	1 cut(s)	219
AccII	CGCG	1 cut(s)	198
AciI	CCGC	1 cut(s)	196
AcuI	CTGAAG	1 cut(s)	485
AcyI	GRCGYC	4 cut(s)	99, 147, 186, 297
AdeI	CACNNNGTG	1 cut(s)	108
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	4 cut(s)	81, 160, 390, 561
AgsI	TTSAA	1 cut(s)	640
AjnI	CCWGG	2 cut(s)	18, 441
AluBI	AGCT	2 cut(s)	340, 408
AluI	AGCT	2 cut(s)	340, 408
Alw26I	GTCTC	2 cut(s)	169, 205
ApeKI	GCWGC	2 cut(s)	408, 510
ArsI	GACNNNNNNTTYG	2 cut(s)	521, 553
AspLEI	GCGC	4 cut(s)	101, 188, 299, 499
AspS9I	GGNCC	1 cut(s)	564
AsuHPI	GGTGA	2 cut(s)	277, 460
AvaII	GGWCC	1 cut(s)	564
BanI	GGYRCC	3 cut(s)	98, 185, 296
BauI	CACGAG	1 cut(s)	202
BbsI	GAAGAC	2 cut(s)	142, 709
BbvI	GCAGC	2 cut(s)	395, 497
BccI	CCATC	5 cut(s)	58, 65, 275, 290, 529
BceAI	ACGGC	1 cut(s)	714
BciT130I	CCWGG	2 cut(s)	20, 443
BcoDI	GTCTC	2 cut(s)	169, 205
BfaI	CTAG	1 cut(s)	227
BfoI	RGCGCY	3 cut(s)	102, 189, 300
BisI	GCNGC	2 cut(s)	409, 511
BlpI	GCTNAGC	2 cut(s)	8, 86
BlsI	GCNGC	2 cut(s)	410, 512
Bme1390I	CCNGG	2 cut(s)	20, 443
Bme18I	GGWCC	1 cut(s)	564
BmgT120I	GGNCC	1 cut(s)	564
BmiI	GGNNCC	6 cut(s)	29, 100, 187, 209, 298, 362
BmrFI	CCNGG	2 cut(s)	20, 443
BmsI	GCATC	1 cut(s)	610
BpiI	GAAGAC	2 cut(s)	142, 709
BplI	GAGNNNNNCTC	2 cut(s)	476, 508
BpmI	CTGGAG	1 cut(s)	347
Bpu1102I	GCTNAGC	2 cut(s)	8, 86
BsaHI	GRCGYC	4 cut(s)	99, 147, 186, 297
BsaI	GGTCTC	1 cut(s)	169
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	4 cut(s)	81, 160, 390, 561
Bse118I	RCCGGY	4 cut(s)	74, 130, 173, 299
Bse1I	ACTGG	4 cut(s)	362, 395, 646, 692
Bse3DI	GCAATG	1 cut(s)	610
BseBI	CCWGG	2 cut(s)	20, 443
BseGI	GGATG	1 cut(s)	57
BseLI	CCNNNNNNNGG	4 cut(s)	81, 160, 390, 561
BseMI	GCAATG	1 cut(s)	610
BseMII	CTCAG	2 cut(s)	22, 100
BseNI	ACTGG	4 cut(s)	362, 395, 646, 692
BseRI	GAGGAG	2 cut(s)	200, 230
BseXI	GCAGC	2 cut(s)	395, 497
Bsh1236I	CGCG	1 cut(s)	198
BshNI	GGYRCC	3 cut(s)	98, 185, 296
BsiSI	CCGG	6 cut(s)	75, 131, 174, 300, 315, 507
BslFI	GGGAC	2 cut(s)	537, 794
BslI	CCNNNNNNNGG	4 cut(s)	81, 160, 390, 561
BsmAI	GTCTC	2 cut(s)	169, 205
BsmBI	CGTCTC	1 cut(s)	205
BsmFI	GGGAC	2 cut(s)	537, 794
BsmI	GAATGC	2 cut(s)	577, 761
Bso31I	GGTCTC	1 cut(s)	169
Bsp143I	GATC	1 cut(s)	399
Bsp1720I	GCTNAGC	2 cut(s)	8, 86
BspACI	CCGC	1 cut(s)	196
BspCNI	CTCAG	2 cut(s)	21, 99
BspFNI	CGCG	1 cut(s)	198
BspLI	GGNNCC	6 cut(s)	29, 100, 187, 209, 298, 362
BspT107I	GGYRCC	3 cut(s)	98, 185, 296
BspTNI	GGTCTC	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	610
BsrFI	RCCGGY	4 cut(s)	74, 130, 173, 299
BsrI	ACTGG	4 cut(s)	362, 395, 646, 692
BssAI	RCCGGY	4 cut(s)	74, 130, 173, 299
BssMI	GATC	1 cut(s)	399
BssNI	GRCGYC	4 cut(s)	99, 147, 186, 297
BssSI	CACGAG	1 cut(s)	202
Bst2BI	CACGAG	1 cut(s)	202
Bst2UI	CCWGG	2 cut(s)	20, 443
Bst4CI	ACNGT	3 cut(s)	533, 559, 589
Bst6I	CTCTTC	3 cut(s)	260, 362, 477
BstACI	GRCGYC	4 cut(s)	99, 147, 186, 297
BstAPI	GCANNNNNTGC	1 cut(s)	429
BstC8I	GCNNGC	5 cut(s)	76, 92, 175, 190, 301
BstDEI	CTNAG	2 cut(s)	8, 86
BstF5I	GGATG	1 cut(s)	57
BstFNI	CGCG	1 cut(s)	198
BstH2I	RGCGCY	3 cut(s)	102, 189, 300
BstHHI	GCGC	4 cut(s)	101, 188, 299, 499
BstKTI	GATC	1 cut(s)	402
BstMAI	GTCTC	2 cut(s)	169, 205
BstMBI	GATC	1 cut(s)	399
BstMWI	GCNNNNNNNGC	6 cut(s)	91, 96, 183, 429, 642, 651
BstNI	CCWGG	2 cut(s)	20, 443
BstSCI	CCNGG	2 cut(s)	18, 441
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	2 cut(s)	395, 497
BstV2I	GAAGAC	2 cut(s)	142, 709
BstXI	CCANNNNNNTGG	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	355
Cac8I	GCNNGC	5 cut(s)	76, 92, 175, 190, 301
CfoI	GCGC	4 cut(s)	101, 188, 299, 499
Cfr10I	RCCGGY	4 cut(s)	74, 130, 173, 299
Cfr13I	GGNCC	1 cut(s)	564
CseI	GACGC	2 cut(s)	136, 187
CsiI	ACCWGGT	1 cut(s)	18
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	3 cut(s)	157, 232, 651
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	2 cut(s)	8, 86
DinI	GGCGCC	3 cut(s)	100, 187, 298
DpnI	GATC	1 cut(s)	401
DpnII	GATC	1 cut(s)	399
DraIII	CACNNNGTG	1 cut(s)	108
DrdI	GACNNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	131
Eam1104I	CTCTTC	3 cut(s)	260, 362, 477
EarI	CTCTTC	3 cut(s)	260, 362, 477
Eco31I	GGTCTC	1 cut(s)	169
Eco47I	GGWCC	1 cut(s)	564
Eco57I	CTGAAG	1 cut(s)	485
EcoRII	CCWGG	2 cut(s)	18, 441
EgeI	GGCGCC	3 cut(s)	100, 187, 298
EheI	GGCGCC	3 cut(s)	100, 187, 298
Esp3I	CGTCTC	1 cut(s)	205
FaeI	CATG	3 cut(s)	160, 235, 654
FaiI	YATR	6 cut(s)	82, 158, 233, 546, 652, 795
FaqI	GGGAC	2 cut(s)	537, 794
FatI	CATG	3 cut(s)	156, 231, 650
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	2 cut(s)	409, 511
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	2 cut(s)	409, 511
FspBI	CTAG	1 cut(s)	227
GlaI	GCGC	4 cut(s)	100, 187, 298, 498
GluI	GCNGC	2 cut(s)	409, 511
GsuI	CTGGAG	1 cut(s)	347
HaeII	RGCGCY	3 cut(s)	102, 189, 300
HapII	CCGG	6 cut(s)	75, 131, 174, 300, 315, 507
HgaI	GACGC	2 cut(s)	136, 187
HhaI	GCGC	4 cut(s)	101, 188, 299, 499
Hin1I	GRCGYC	4 cut(s)	99, 147, 186, 297
Hin1II	CATG	3 cut(s)	160, 235, 654
Hin6I	GCGC	4 cut(s)	99, 186, 297, 497
HinP1I	GCGC	4 cut(s)	99, 186, 297, 497
HincII	GTYRAC	2 cut(s)	376, 592
HindII	GTYRAC	2 cut(s)	376, 592
HinfI	GANTC	1 cut(s)	372
HpaII	CCGG	6 cut(s)	75, 131, 174, 300, 315, 507
HphI	GGTGA	2 cut(s)	277, 460
Hpy166II	GTNNAC	3 cut(s)	220, 376, 592
Hpy188I	TCNGA	2 cut(s)	526, 678
Hpy188III	TCNNGA	6 cut(s)	40, 61, 364, 403, 562, 766
Hpy8I	GTNNAC	3 cut(s)	220, 376, 592
Hpy99I	CGWCG	2 cut(s)	74, 251
HpyAV	CCTTC	2 cut(s)	55, 286
HpyCH4III	ACNGT	3 cut(s)	533, 559, 589
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	4 cut(s)	603, 623, 654, 761
HpyF10VI	GCNNNNNNNGC	6 cut(s)	91, 96, 183, 429, 642, 651
HpyF3I	CTNAG	2 cut(s)	8, 86
HpySE526I	ACGT	1 cut(s)	306
Hsp92I	GRCGYC	4 cut(s)	99, 147, 186, 297
Hsp92II	CATG	3 cut(s)	160, 235, 654
HspAI	GCGC	4 cut(s)	99, 186, 297, 497
KasI	GGCGCC	3 cut(s)	98, 185, 296
KroI	GCCGGC	3 cut(s)	74, 173, 299
KroNI	GCCGGC	3 cut(s)	76, 175, 301
Kzo9I	GATC	1 cut(s)	399
LmnI	GCTCC	3 cut(s)	213, 366, 437
Lsp1109I	GCAGC	2 cut(s)	395, 497
LweI	GCATC	1 cut(s)	610
MabI	ACCWGGT	1 cut(s)	18
MaeI	CTAG	1 cut(s)	227
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	1 cut(s)	683
MalI	GATC	1 cut(s)	401
MboI	GATC	1 cut(s)	399
MboII	GAAGA	8 cut(s)	142, 247, 262, 379, 494, 573, 709, 718
MfeI	CAATTG	1 cut(s)	640
MluCI	AATT	2 cut(s)	436, 640
Mly113I	GGCGCC	3 cut(s)	99, 186, 297
MlyI	GAGTC	1 cut(s)	381
MreI	CGCCGGCG	1 cut(s)	74
MroNI	GCCGGC	3 cut(s)	74, 173, 299
MslI	CAYNNNNRTG	2 cut(s)	62, 737
MspI	CCGG	6 cut(s)	75, 131, 174, 300, 315, 507
MspR9I	CCNGG	2 cut(s)	20, 443
MunI	CAATTG	1 cut(s)	640
Mva1269I	GAATGC	2 cut(s)	577, 761
MvaI	CCWGG	2 cut(s)	20, 443
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	6 cut(s)	91, 96, 183, 429, 642, 651
NaeI	GCCGGC	3 cut(s)	76, 175, 301
NarI	GGCGCC	3 cut(s)	99, 186, 297
NdeII	GATC	1 cut(s)	399
NgoMIV	GCCGGC	3 cut(s)	74, 173, 299
NlaIII	CATG	3 cut(s)	160, 235, 654
NlaIV	GGNNCC	6 cut(s)	29, 100, 187, 209, 298, 362
NmeAIII	GCCGAG	2 cut(s)	123, 321
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	2 cut(s)	577, 761
PdiI	GCCGGC	3 cut(s)	76, 175, 301
PflMI	CCANNNNNTGG	2 cut(s)	390, 561
PfoI	TCCNGGA	1 cut(s)	441
PkrI	GCNGC	2 cut(s)	410, 512
PleI	GAGTC	1 cut(s)	380
PluTI	GGCGCC	3 cut(s)	102, 189, 300
PpsI	GAGTC	1 cut(s)	380
PsiI	TTATAA	1 cut(s)	795
Psp6I	CCWGG	2 cut(s)	18, 441
PspGI	CCWGG	2 cut(s)	18, 441
PspN4I	GGNNCC	6 cut(s)	29, 100, 187, 209, 298, 362
PspPI	GGNCC	1 cut(s)	564
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
RseI	CAYNNNNRTG	2 cut(s)	62, 737
SatI	GCNGC	2 cut(s)	409, 511
Sau3AI	GATC	1 cut(s)	399
Sau96I	GGNCC	1 cut(s)	564
SchI	GAGTC	1 cut(s)	381
ScrFI	CCNGG	2 cut(s)	20, 443
SetI	ASST	8 cut(s)	21, 47, 225, 309, 342, 410, 429, 492
SexAI	ACCWGGT	1 cut(s)	18
SfaNI	GCATC	1 cut(s)	610
SfoI	GGCGCC	3 cut(s)	100, 187, 298
SgrAI	CRCCGGYG	1 cut(s)	74
SinI	GGWCC	1 cut(s)	564
SmiMI	CAYNNNNRTG	2 cut(s)	62, 737
Sse9I	AATT	2 cut(s)	436, 640
SsiI	CCGC	1 cut(s)	196
SspDI	GGCGCC	3 cut(s)	98, 185, 296
SspI	AATATT	2 cut(s)	712, 791
SspMI	CTAG	1 cut(s)	227
StyD4I	CCNGG	2 cut(s)	18, 441
TaaI	ACNGT	3 cut(s)	533, 559, 589
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	1 cut(s)	123
TasI	AATT	2 cut(s)	436, 640
TatI	WGTACW	1 cut(s)	333
TscAI	CASTG	1 cut(s)	362
TseI	GCWGC	2 cut(s)	408, 510
TspDTI	ATGAA	3 cut(s)	169, 621, 801
TspGWI	ACGGA	1 cut(s)	736
TspRI	CASTG	1 cut(s)	362
Van91I	CCANNNNNTGG	2 cut(s)	390, 561
VpaK11BI	GGWCC	1 cut(s)	564
XmiI	GTMKAC	1 cut(s)	219
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.