Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0015286

Physical Location & Seq

Genomic Coordinates Reverse (-)

22018750 .. 22021535

Gene Structure 2786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00349210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGGACTCAGCAACAACCTGGTGGGCTTTCTCAACTTTCTCACCTTCCTCTGCTCCATCCCAATCATCGTCGCCGGAGTATGGCTGAGCAAGCAAGGCAACACCGAGTGCGAGAAGTTTCTGGAGAAGCCGATCATCATGATCGGCATCTTCCTCATGATCGTCTCCCTCACCGGCTTCATCGGCTCCTGTTTCCGCATCTCCTGGCTCCTCTGGTTCTACCTCCTCGTCATGTTCCTCCTCATCGTTGTCCTCTTCGGCTACACCATCTTCGCCTTCGTAATCACCAACAAGGGCGCCGGAACCGTGCTCTCCGGTAAGGGATACAAGGAGTACAAGCTCGGTGACTACTCTCACTGGCTGCAGAAGAGGGTCAACAGCACCAAGAACTGGAACAAGATCAGGAGCTGCCTCAGTGATAGCAAGGTCTGCTCCAGTTTCCAGGACAAGTATCTCAACGATACTCTCTCCCAGTTCTATACCGAGAACTTGTCTGCGCTTCAGGCCGGCTGCTGCAAGCCATCAGATGAATGTGGTTTTACCTATGAAAGTCCCACTGTCTGGACCAAGAATGCTACTGTCGTTTCTACCAACCCTGACTGCAATGCATGGGATAGTGATCCAAAGGTTCTGTGCTTCAACTGCCAGTCATGTAAGGCTGGACTGCTCGACAATCTGAAAAGTAACTGGAAGAAGACGGCTGTTATCAACATTGTCTTCCTCATCTTCCTTGTCATCGTGTATTCCGTAGGGTGCTGTGCATTCAGGAATAACAGGAGGGACAATGACTATTTTAAGCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0012505 GO:0016020 GO:0030054 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

267

Amino Acids

30.26

Weight (kDa)

8.87

Isoelectric Point (pI)

31.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tetraspanin	PF00335	5 - 254	1e-38	Tetraspanin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23810
fragaria_vesca	FvH4_4g10210
malus_domestica	MD13G1273700.v1.1 MD16G1261500.v1.1
prunus_persica	Prupe.1G098200_v2.0.a1
pyrus_communis	pycom13g28840 pycom16g22990
rosa_chinensis	RchiOBHm_Chr4g0405031
rosa_laevigata	RLG00000008883
rosa_multiflora	Rmu_ssc0000127.1_g000047
rosa_roxburghii	Rroxscaffold_5G00349210
rosa_rugosa	Rorug04G0052400
rosa_samantha	Rh4AG127300 Rh4BG121200 Rh4CG135300
rosa_wichuraiana	Rw4G010320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	296
AccB7I	CCANNNNNTGG	2 cut(s)	390, 561
AciI	CCGC	2 cut(s)	196, 799
AclWI	GGATC	1 cut(s)	614
AcuI	CTGAAG	1 cut(s)	485
AcyI	GRCGYC	1 cut(s)	297
AdeI	CACNNNGTG	1 cut(s)	108
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	3 cut(s)	81, 390, 561
AgsI	TTSAA	1 cut(s)	640
AjnI	CCWGG	3 cut(s)	18, 203, 441
AluBI	AGCT	2 cut(s)	340, 408
AluI	AGCT	2 cut(s)	340, 408
Alw21I	GWGCWC	1 cut(s)	312
Alw26I	GTCTC	1 cut(s)	169
AlwI	GGATC	1 cut(s)	614
AlwNI	CAGNNNCTG	1 cut(s)	408
AoxI	GGCC	1 cut(s)	504
ApeKI	GCWGC	4 cut(s)	361, 408, 510, 513
AspLEI	GCGC	2 cut(s)	299, 499
AspS9I	GGNCC	1 cut(s)	564
AsuHPI	GGTGA	4 cut(s)	34, 163, 277, 356
AvaII	GGWCC	1 cut(s)	564
BanI	GGYRCC	1 cut(s)	296
BbsI	GAAGAC	2 cut(s)	701, 709
Bbv12I	GWGCWC	1 cut(s)	312
BbvI	GCAGC	4 cut(s)	348, 395, 497, 500
BccI	CCATC	3 cut(s)	65, 275, 529
BceAI	ACGGC	1 cut(s)	714
BciT130I	CCWGG	3 cut(s)	20, 205, 443
BciVI	GTATCC	1 cut(s)	317
BcoDI	GTCTC	1 cut(s)	169
BfmI	CTRYAG	1 cut(s)	362
BfoI	RGCGCY	1 cut(s)	300
BfuI	GTATCC	1 cut(s)	317
BisI	GCNGC	4 cut(s)	362, 409, 511, 514
BlpI	GCTNAGC	1 cut(s)	86
BlsI	GCNGC	4 cut(s)	363, 410, 512, 515
Bme1390I	CCNGG	3 cut(s)	20, 205, 443
Bme18I	GGWCC	1 cut(s)	564
BmgT120I	GGNCC	1 cut(s)	564
BmiI	GGNNCC	4 cut(s)	187, 209, 298, 304
BmrFI	CCNGG	3 cut(s)	20, 205, 443
BmrI	ACTGGG	1 cut(s)	466
BmsI	GCATC	2 cut(s)	156, 207
BmuI	ACTGGG	1 cut(s)	466
BpiI	GAAGAC	2 cut(s)	701, 709
BpmI	CTGGAG	2 cut(s)	143, 418
Bpu1102I	GCTNAGC	1 cut(s)	86
BsaBI	GATNNNNATC	2 cut(s)	146, 618
BsaHI	GRCGYC	1 cut(s)	297
BsaWI	WCCGGW	1 cut(s)	314
Bsc4I	CCNNNNNNNGG	3 cut(s)	81, 390, 561
Bse118I	RCCGGY	2 cut(s)	173, 506
Bse1I	ACTGG	6 cut(s)	362, 395, 435, 472, 646, 692
Bse3DI	GCAATG	1 cut(s)	610
Bse8I	GATNNNNATC	2 cut(s)	146, 618
BseBI	CCWGG	3 cut(s)	20, 205, 443
BseGI	GGATG	1 cut(s)	57
BseJI	GATNNNNATC	2 cut(s)	146, 618
BseLI	CCNNNNNNNGG	3 cut(s)	81, 390, 561
BseMI	GCAATG	1 cut(s)	610
BseMII	CTCAG	3 cut(s)	22, 77, 427
BseNI	ACTGG	6 cut(s)	362, 395, 435, 472, 646, 692
BseRI	GAGGAG	3 cut(s)	200, 215, 230
BseXI	GCAGC	4 cut(s)	348, 395, 497, 500
BshFI	GGCC	1 cut(s)	506
BshNI	GGYRCC	1 cut(s)	296
BsiHKAI	GWGCWC	1 cut(s)	312
BsiSI	CCGG	5 cut(s)	75, 174, 300, 315, 507
BslFI	GGGAC	3 cut(s)	18, 537, 794
BslI	CCNNNNNNNGG	3 cut(s)	81, 390, 561
BsmAI	GTCTC	1 cut(s)	169
BsmBI	CGTCTC	1 cut(s)	169
BsmFI	GGGAC	3 cut(s)	18, 537, 794
BsmI	GAATGC	2 cut(s)	577, 761
BsnI	GGCC	1 cut(s)	506
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp143I	GATC	5 cut(s)	132, 141, 159, 399, 619
Bsp1720I	GCTNAGC	1 cut(s)	86
BspACI	CCGC	2 cut(s)	196, 799
BspANI	GGCC	1 cut(s)	506
BspCNI	CTCAG	3 cut(s)	21, 78, 426
BspHI	TCATGA	2 cut(s)	138, 156
BspLI	GGNNCC	4 cut(s)	187, 209, 298, 304
BspMAI	CTGCAG	1 cut(s)	366
BspPI	GGATC	1 cut(s)	614
BspT107I	GGYRCC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	610
BsrFI	RCCGGY	2 cut(s)	173, 506
BsrI	ACTGG	6 cut(s)	362, 395, 435, 472, 646, 692
BssAI	RCCGGY	2 cut(s)	173, 506
BssMI	GATC	5 cut(s)	132, 141, 159, 399, 619
BssNI	GRCGYC	1 cut(s)	297
Bst2UI	CCWGG	3 cut(s)	20, 205, 443
Bst4CI	ACNGT	3 cut(s)	307, 559, 580
Bst6I	CTCTTC	2 cut(s)	260, 362
BstACI	GRCGYC	1 cut(s)	297
BstAPI	GCANNNNNTGC	1 cut(s)	429
BstC8I	GCNNGC	3 cut(s)	92, 508, 518
BstDEI	CTNAG	3 cut(s)	8, 86, 413
BstF5I	GGATG	1 cut(s)	57
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	2 cut(s)	299, 499
BstKTI	GATC	5 cut(s)	135, 144, 162, 402, 622
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	5 cut(s)	132, 141, 159, 399, 619
BstMWI	GCNNNNNNNGC	6 cut(s)	91, 96, 183, 429, 503, 642
BstNI	CCWGG	3 cut(s)	20, 205, 443
BstSCI	CCNGG	3 cut(s)	18, 203, 441
BstSFI	CTRYAG	1 cut(s)	362
BstV1I	GCAGC	4 cut(s)	348, 395, 497, 500
BstV2I	GAAGAC	2 cut(s)	701, 709
BsuI	GTATCC	1 cut(s)	317
BsuRI	GGCC	1 cut(s)	506
BtsCI	GGATG	1 cut(s)	57
BtsIMutI	CAGTG	3 cut(s)	355, 421, 555
Cac8I	GCNNGC	3 cut(s)	92, 508, 518
CaiI	CAGNNNCTG	1 cut(s)	408
CciI	TCATGA	2 cut(s)	138, 156
CfoI	GCGC	2 cut(s)	299, 499
Cfr10I	RCCGGY	2 cut(s)	173, 506
Cfr13I	GGNCC	1 cut(s)	564
CsiI	ACCWGGT	1 cut(s)	18
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	5 cut(s)	139, 157, 232, 609, 651
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	3 cut(s)	8, 86, 413
DinI	GGCGCC	1 cut(s)	298
DpnI	GATC	5 cut(s)	134, 143, 161, 401, 621
DpnII	GATC	5 cut(s)	132, 141, 159, 399, 619
DraIII	CACNNNGTG	1 cut(s)	108
Eam1104I	CTCTTC	2 cut(s)	260, 362
EarI	CTCTTC	2 cut(s)	260, 362
Eco47I	GGWCC	1 cut(s)	564
Eco57I	CTGAAG	1 cut(s)	485
EcoRII	CCWGG	3 cut(s)	18, 203, 441
EcoT22I	ATGCAT	1 cut(s)	610
EgeI	GGCGCC	1 cut(s)	298
EheI	GGCGCC	1 cut(s)	298
Esp3I	CGTCTC	1 cut(s)	169
FaeI	CATG	5 cut(s)	142, 160, 235, 612, 654
FaiI	YATR	8 cut(s)	82, 140, 158, 233, 480, 546, 610, 652
FaqI	GGGAC	3 cut(s)	18, 537, 794
FatI	CATG	5 cut(s)	138, 156, 231, 608, 650
Fnu4HI	GCNGC	4 cut(s)	362, 409, 511, 514
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	4 cut(s)	362, 409, 511, 514
GlaI	GCGC	2 cut(s)	298, 498
GluI	GCNGC	4 cut(s)	362, 409, 511, 514
GsuI	CTGGAG	2 cut(s)	143, 418
HaeII	RGCGCY	1 cut(s)	300
HaeIII	GGCC	1 cut(s)	506
HapII	CCGG	5 cut(s)	75, 174, 300, 315, 507
HhaI	GCGC	2 cut(s)	299, 499
Hin1I	GRCGYC	1 cut(s)	297
Hin1II	CATG	5 cut(s)	142, 160, 235, 612, 654
Hin6I	GCGC	2 cut(s)	297, 497
HinP1I	GCGC	2 cut(s)	297, 497
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HinfI	GANTC	1 cut(s)	6
HpaII	CCGG	5 cut(s)	75, 174, 300, 315, 507
HphI	GGTGA	4 cut(s)	34, 163, 277, 356
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	2 cut(s)	526, 678
Hpy188III	TCNNGA	6 cut(s)	122, 139, 157, 403, 562, 766
Hpy8I	GTNNAC	1 cut(s)	376
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	2 cut(s)	55, 286
HpyCH4III	ACNGT	3 cut(s)	307, 559, 580
HpyCH4V	TGCA	5 cut(s)	364, 516, 603, 608, 761
HpyF10VI	GCNNNNNNNGC	6 cut(s)	91, 96, 183, 429, 503, 642
HpyF3I	CTNAG	3 cut(s)	8, 86, 413
Hsp92I	GRCGYC	1 cut(s)	297
Hsp92II	CATG	5 cut(s)	142, 160, 235, 612, 654
HspAI	GCGC	2 cut(s)	297, 497
KasI	GGCGCC	1 cut(s)	296
KroI	GCCGGC	1 cut(s)	506
KroNI	GCCGGC	1 cut(s)	508
Kzo9I	GATC	5 cut(s)	132, 141, 159, 399, 619
LmnI	GCTCC	5 cut(s)	59, 191, 213, 405, 437
Lsp1109I	GCAGC	4 cut(s)	348, 395, 497, 500
LweI	GCATC	2 cut(s)	156, 207
MabI	ACCWGGT	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	344, 683
MalI	GATC	5 cut(s)	134, 143, 161, 401, 621
MboI	GATC	5 cut(s)	132, 141, 159, 399, 619
MboII	GAAGA	8 cut(s)	142, 247, 262, 379, 703, 706, 709, 718
MhlI	GDGCHC	1 cut(s)	312
Mly113I	GGCGCC	1 cut(s)	297
Mph1103I	ATGCAT	1 cut(s)	610
MroNI	GCCGGC	1 cut(s)	506
MseI	TTAA	1 cut(s)	795
MspI	CCGG	5 cut(s)	75, 174, 300, 315, 507
MspR9I	CCNGG	3 cut(s)	20, 205, 443
Mva1269I	GAATGC	2 cut(s)	577, 761
MvaI	CCWGG	3 cut(s)	20, 205, 443
MwoI	GCNNNNNNNGC	6 cut(s)	91, 96, 183, 429, 503, 642
NaeI	GCCGGC	1 cut(s)	508
NarI	GGCGCC	1 cut(s)	297
NdeII	GATC	5 cut(s)	132, 141, 159, 399, 619
NgoMIV	GCCGGC	1 cut(s)	506
NlaIII	CATG	5 cut(s)	142, 160, 235, 612, 654
NlaIV	GGNNCC	4 cut(s)	187, 209, 298, 304
NmuCI	GTSAC	1 cut(s)	344
NsiI	ATGCAT	1 cut(s)	610
PagI	TCATGA	2 cut(s)	138, 156
PcsI	WCGNNNNNNNCGW	1 cut(s)	744
PctI	GAATGC	2 cut(s)	577, 761
PdiI	GCCGGC	1 cut(s)	508
PflMI	CCANNNNNTGG	2 cut(s)	390, 561
PfoI	TCCNGGA	1 cut(s)	441
PkrI	GCNGC	4 cut(s)	363, 410, 512, 515
PluTI	GGCGCC	1 cut(s)	300
Psp6I	CCWGG	3 cut(s)	18, 203, 441
PspGI	CCWGG	3 cut(s)	18, 203, 441
PspN4I	GGNNCC	4 cut(s)	187, 209, 298, 304
PspPI	GGNCC	1 cut(s)	564
PstI	CTGCAG	1 cut(s)	366
PstNI	CAGNNNCTG	1 cut(s)	408
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
SaqAI	TTAA	1 cut(s)	795
SatI	GCNGC	4 cut(s)	362, 409, 511, 514
Sau3AI	GATC	5 cut(s)	132, 141, 159, 399, 619
Sau96I	GGNCC	1 cut(s)	564
ScrFI	CCNGG	3 cut(s)	20, 205, 443
SduI	GDGCHC	1 cut(s)	312
SetI	ASST	8 cut(s)	21, 47, 225, 342, 410, 429, 545, 630
SexAI	ACCWGGT	1 cut(s)	18
SfaNI	GCATC	2 cut(s)	156, 207
SfcI	CTRYAG	1 cut(s)	362
SfoI	GGCGCC	1 cut(s)	298
SinI	GGWCC	1 cut(s)	564
SsiI	CCGC	2 cut(s)	196, 799
SspDI	GGCGCC	1 cut(s)	296
StyD4I	CCNGG	3 cut(s)	18, 203, 441
TaaI	ACNGT	3 cut(s)	307, 559, 580
TaqI	TCGA	1 cut(s)	669
TatI	WGTACW	1 cut(s)	333
Tru1I	TTAA	1 cut(s)	795
Tru9I	TTAA	1 cut(s)	795
TscAI	CASTG	3 cut(s)	362, 421, 562
TseFI	GTSAC	1 cut(s)	344
TseI	GCWGC	4 cut(s)	361, 408, 510, 513
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	3 cut(s)	169, 543, 561
TspGWI	ACGGA	1 cut(s)	736
TspRI	CASTG	3 cut(s)	362, 421, 562
Van91I	CCANNNNNTGG	2 cut(s)	390, 561
VpaK11BI	GGWCC	1 cut(s)	564
Zsp2I	ATGCAT	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.