Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0015286

Physical Location & Seq

Genomic Coordinates Forward (+)

8073414 .. 8073771

Gene Structure 358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0052400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGTCGCCGCCTGATGTGTTCCTACATATCACAATCCGAGGACAATTTTGGCAGGCCTTATTGGTACTGCTATGGGTTCCCGGATGCGGATCTAGGCTAACGTTTGTTGGAACCATTTGGCTACAATGCAAGGGCCGACGGTCCACAGACCATCATTCATTTGGGGAGATGAGTGCAAGATCCAGTGTGCGGGTTTCAACGGCTTCACTGAGTATGAAGAACCTGAGTGAACGCCTCATGCCGTTTCGGACTGCAATGCCTAGGGATTCATCATACTTGTCACGGTACTACTCGCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0012505 GO:0016020 GO:0030054 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

99

Amino Acids

11.3

Weight (kDa)

10.49

Isoelectric Point (pI)

73.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23810
fragaria_vesca	FvH4_4g10210
malus_domestica	MD13G1273700.v1.1 MD16G1261500.v1.1
prunus_persica	Prupe.1G098200_v2.0.a1
pyrus_communis	pycom13g28840 pycom16g22990
rosa_chinensis	RchiOBHm_Chr4g0405031
rosa_laevigata	RLG00000008883
rosa_multiflora	Rmu_ssc0000127.1_g000047
rosa_roxburghii	Rroxscaffold_5G00349210
rosa_rugosa	Rorug04G0052400
rosa_samantha	Rh4AG127300 Rh4BG121200 Rh4CG135300
rosa_wichuraiana	Rw4G010320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	8, 87, 190
AclI	AACGTT	1 cut(s)	101
AclWI	GGATC	2 cut(s)	97, 174
AfaI	GTAC	2 cut(s)	66, 287
AfiI	CCNNNNNNNGG	2 cut(s)	86, 189
AgsI	TTSAA	1 cut(s)	198
AlwI	GGATC	2 cut(s)	97, 174
AoxI	GGCC	2 cut(s)	54, 133
AspA2I	CCTAGG	1 cut(s)	260
AspS9I	GGNCC	2 cut(s)	133, 141
AsuC2I	CCSGG	1 cut(s)	81
AvaII	GGWCC	1 cut(s)	141
AvrII	CCTAGG	1 cut(s)	260
BccI	CCATC	1 cut(s)	159
BceAI	ACGGC	3 cut(s)	216, 226, 280
BcnI	CCSGG	1 cut(s)	81
BfaI	CTAG	2 cut(s)	93, 261
BisI	GCNGC	1 cut(s)	8
BlnI	CCTAGG	1 cut(s)	260
BlsI	GCNGC	1 cut(s)	9
Bme1390I	CCNGG	1 cut(s)	81
Bme18I	GGWCC	1 cut(s)	141
BmgT120I	GGNCC	2 cut(s)	133, 141
BmiI	GGNNCC	2 cut(s)	78, 112
BmrFI	CCNGG	1 cut(s)	81
BmsI	GCATC	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	81
BsaBI	GATNNNNATC	1 cut(s)	88
BsaJI	CCNNGG	2 cut(s)	37, 260
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 189
Bse1I	ACTGG	1 cut(s)	183
Bse3DI	GCAATG	1 cut(s)	261
Bse8I	GATNNNNATC	1 cut(s)	88
BseDI	CCNNGG	2 cut(s)	37, 260
BseGI	GGATG	1 cut(s)	89
BseJI	GATNNNNATC	1 cut(s)	88
BseLI	CCNNNNNNNGG	2 cut(s)	86, 189
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	2 cut(s)	200, 215
BseNI	ACTGG	1 cut(s)	183
BshFI	GGCC	2 cut(s)	56, 135
BsiSI	CCGG	1 cut(s)	81
BslI	CCNNNNNNNGG	2 cut(s)	86, 189
BsnI	GGCC	2 cut(s)	56, 135
Bsp143I	GATC	2 cut(s)	89, 179
BspACI	CCGC	3 cut(s)	8, 87, 190
BspANI	GGCC	2 cut(s)	56, 135
BspCNI	CTCAG	2 cut(s)	201, 216
BspLI	GGNNCC	2 cut(s)	78, 112
BspPI	GGATC	2 cut(s)	97, 174
BsrDI	GCAATG	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	183
BssECI	CCNNGG	2 cut(s)	37, 260
BssMI	GATC	2 cut(s)	89, 179
BssT1I	CCWWGG	1 cut(s)	260
Bst4CI	ACNGT	2 cut(s)	141, 285
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	2 cut(s)	209, 224
BstF5I	GGATG	1 cut(s)	89
BstKTI	GATC	2 cut(s)	92, 182
BstMBI	GATC	2 cut(s)	89, 179
BstSCI	CCNGG	1 cut(s)	79
BstX2I	RGATCY	2 cut(s)	89, 179
BstYI	RGATCY	2 cut(s)	89, 179
BsuRI	GGCC	2 cut(s)	56, 135
BtsCI	GGATG	1 cut(s)	89
BtsIMutI	CAGTG	2 cut(s)	190, 206
Cac8I	GCNNGC	1 cut(s)	54
Cfr13I	GGNCC	2 cut(s)	133, 141
Csp6I	GTAC	2 cut(s)	65, 286
CviAII	CATG	1 cut(s)	238
CviJI	RGCY	5 cut(s)	56, 97, 121, 135, 203
CviKI_1	RGCY	5 cut(s)	56, 97, 121, 135, 203
CviQI	GTAC	2 cut(s)	65, 286
DdeI	CTNAG	2 cut(s)	209, 224
DpnI	GATC	2 cut(s)	91, 181
DpnII	GATC	2 cut(s)	89, 179
Eco130I	CCWWGG	1 cut(s)	260
Eco147I	AGGCCT	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	141
EcoT14I	CCWWGG	1 cut(s)	260
ErhI	CCWWGG	1 cut(s)	260
FaeI	CATG	1 cut(s)	241
FaiI	YATR	5 cut(s)	27, 73, 215, 239, 274
FatI	CATG	1 cut(s)	237
FauI	CCCGC	1 cut(s)	183
Fnu4HI	GCNGC	1 cut(s)	8
FokI	GGATG	1 cut(s)	96
Fsp4HI	GCNGC	1 cut(s)	8
FspBI	CTAG	2 cut(s)	93, 261
GluI	GCNGC	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	56, 135
HapII	CCGG	1 cut(s)	81
Hin1II	CATG	1 cut(s)	241
HinfI	GANTC	1 cut(s)	266
HpaII	CCGG	1 cut(s)	81
Hpy166II	GTNNAC	2 cut(s)	144, 230
Hpy188I	TCNGA	2 cut(s)	38, 249
Hpy8I	GTNNAC	2 cut(s)	144, 230
Hpy99I	CGWCG	1 cut(s)	141
HpyCH4III	ACNGT	2 cut(s)	141, 285
HpyCH4IV	ACGT	1 cut(s)	101
HpyCH4V	TGCA	3 cut(s)	129, 176, 254
HpyF3I	CTNAG	2 cut(s)	209, 224
HpySE526I	ACGT	1 cut(s)	101
Hsp92II	CATG	1 cut(s)	241
Kzo9I	GATC	2 cut(s)	89, 179
LpnPI	CCDG	5 cut(s)	24, 38, 94, 196, 236
LweI	GCATC	1 cut(s)	74
MaeI	CTAG	2 cut(s)	93, 261
MaeII	ACGT	1 cut(s)	101
MaeIII	GTNAC	1 cut(s)	279
MalI	GATC	2 cut(s)	91, 181
MboI	GATC	2 cut(s)	89, 179
MboII	GAAGA	1 cut(s)	229
MflI	RGATCY	2 cut(s)	89, 179
MluCI	AATT	1 cut(s)	44
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	2 cut(s)	32, 245
MspI	CCGG	1 cut(s)	81
MspR9I	CCNGG	1 cut(s)	81
NciI	CCSGG	1 cut(s)	81
NdeII	GATC	2 cut(s)	89, 179
NlaIII	CATG	1 cut(s)	241
NlaIV	GGNNCC	2 cut(s)	78, 112
NmuCI	GTSAC	1 cut(s)	279
PceI	AGGCCT	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	266
PfoI	TCCNGGA	1 cut(s)	79
PkrI	GCNGC	1 cut(s)	9
Psp1406I	AACGTT	1 cut(s)	101
PspN4I	GGNNCC	2 cut(s)	78, 112
PspPI	GGNCC	2 cut(s)	133, 141
PsuI	RGATCY	2 cut(s)	89, 179
RsaI	GTAC	2 cut(s)	66, 287
RsaNI	GTAC	2 cut(s)	65, 286
SatI	GCNGC	1 cut(s)	8
Sau3AI	GATC	2 cut(s)	89, 179
Sau96I	GGNCC	2 cut(s)	133, 141
ScrFI	CCNGG	1 cut(s)	81
SetI	ASST	2 cut(s)	104, 225
SfaNI	GCATC	1 cut(s)	74
SinI	GGWCC	1 cut(s)	141
Sse9I	AATT	1 cut(s)	44
SseBI	AGGCCT	1 cut(s)	56
SsiI	CCGC	3 cut(s)	8, 87, 190
SspMI	CTAG	2 cut(s)	93, 261
StuI	AGGCCT	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	79
StyI	CCWWGG	1 cut(s)	260
TaaI	ACNGT	2 cut(s)	141, 285
TaiI	ACGT	1 cut(s)	104
TasI	AATT	1 cut(s)	44
TauI	GCSGC	1 cut(s)	10
TfiI	GAWTC	1 cut(s)	266
TscAI	CASTG	2 cut(s)	190, 213
TseFI	GTSAC	1 cut(s)	279
Tsp45I	GTSAC	1 cut(s)	279
TspDTI	ATGAA	3 cut(s)	147, 230, 258
TspRI	CASTG	2 cut(s)	190, 213
VpaK11BI	GGWCC	1 cut(s)	141
XcmI	CCANNNNNNNNNTGG	1 cut(s)	158
XmaJI	CCTAGG	1 cut(s)	260
XspI	CTAG	2 cut(s)	93, 261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.