Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0015286

Physical Location & Seq

Genomic Coordinates Reverse (-)

37041665 .. 37044589

Gene Structure 2925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1273700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGAGGGTCAGCAACAACCTGGTGGGTCTCCTCAACTTCATAACGTTCCTGCTGTCGATTCCGATCGTGTGGGCCGGAGTATGGCTGAGCAAGCAAGGCAGCACCGAGTGTGAGAAGTTCCTAGACAAGCCCGTCATCATCCTCGGCGTATTCCTGATGCTGGTGTCGCTGGCCGGCCTAATCGGCGCCTGCTGCCGGGTCTCGTGGCTGCTGTGGGTCTACCTACTGGTCATGTTCCTCCTCATCGTAGTCCTCTTCGCCGTCACCATCTTCGCCTTCGCCGTCACCAACAAAGGCGCCGGAAAAGTGCTTTCCAATAGAGGGTACAAGGAGTACAAGCTCGGGGACTACTCGCAGTGGCTGCAGAAGAGGGTTAACAGCACCAAGAACTGGAACAAGATCAAGAGCTGTCTCATTGACAGCAAGGTCTGCTCTAATTTCAGGGACAAGTATGCCAATGATACCATCCAGACCTTCTATTCTGAGAACCTGTCAGCGCTTCAGGCTGGTTGCTGTAAGCCATCGGATGGTTGTGGATTTTCCTACGTGACCCCCATATCCTGGACCAATAACGCTACCACCGTTTCCTCCAACCCTGACTGCAGTGCATGGCAGAATGATGAAAAGGTTCTGTGCTTCAACTGTCAGTCGTGCAAGGCTGGACTGCTGGACAACGTAAAAAGTAATTGGAAGAAGACGGCCATTGTCAACATTGTATTCCTTATCTTCCTCATCGTGGTGTATTCGGTTGGATGCTGCGCGTTTAGGAACAACAGCAGGGACAATGGATATTGGAAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0012505 GO:0016020 GO:0030054 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

268

Amino Acids

29.93

Weight (kDa)

9.1

Isoelectric Point (pI)

23.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tetraspanin	PF00335	5 - 254	2.1e-39	Tetraspanin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23810
fragaria_vesca	FvH4_4g10210
malus_domestica	MD13G1273700.v1.1 MD16G1261500.v1.1
prunus_persica	Prupe.1G098200_v2.0.a1
pyrus_communis	pycom13g28840 pycom16g22990
rosa_chinensis	RchiOBHm_Chr4g0405031
rosa_laevigata	RLG00000008883
rosa_multiflora	Rmu_ssc0000127.1_g000047
rosa_roxburghii	Rroxscaffold_5G00349210
rosa_rugosa	Rorug04G0052400
rosa_samantha	Rh4AG127300 Rh4BG121200 Rh4CG135300
rosa_wichuraiana	Rw4G010320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	131, 425
AccB1I	GGYRCC	2 cut(s)	185, 296
AccB7I	CCANNNNNTGG	3 cut(s)	390, 527, 561
AccI	GTMKAC	1 cut(s)	219
AccII	CGCG	1 cut(s)	761
AclI	AACGTT	1 cut(s)	44
AcoI	YGGCCR	2 cut(s)	171, 699
AcuI	CTGAAG	1 cut(s)	485
AcyI	GRCGYC	2 cut(s)	186, 297
AdeI	CACNNNGTG	1 cut(s)	108
AfaI	GTAC	2 cut(s)	326, 335
AfeI	AGCGCT	1 cut(s)	498
AfiI	CCNNNNNNNGG	8 cut(s)	81, 160, 195, 321, 390, 527, 561, 736
AgsI	TTSAA	1 cut(s)	640
AjnI	CCWGG	2 cut(s)	18, 560
AluBI	AGCT	2 cut(s)	340, 408
AluI	AGCT	2 cut(s)	340, 408
Alw26I	GTCTC	3 cut(s)	32, 205, 416
AlwNI	CAGNNNCTG	1 cut(s)	361
Ama87I	CYCGRG	1 cut(s)	341
Aor51HI	AGCGCT	1 cut(s)	498
AoxI	GGCC	4 cut(s)	72, 171, 175, 699
ApeKI	GCWGC	5 cut(s)	99, 192, 208, 361, 756
Asp700I	GAANNNNTTC	1 cut(s)	627
AspLEI	GCGC	4 cut(s)	188, 299, 499, 761
AspS9I	GGNCC	2 cut(s)	72, 564
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	2 cut(s)	256, 277
AvaI	CYCGRG	1 cut(s)	341
AvaII	GGWCC	1 cut(s)	564
BanI	GGYRCC	2 cut(s)	185, 296
BauI	CACGAG	1 cut(s)	202
BbsI	GAAGAC	1 cut(s)	701
BbvI	GCAGC	5 cut(s)	111, 179, 195, 348, 743
BccI	CCATC	4 cut(s)	275, 473, 521, 529
BceAI	ACGGC	3 cut(s)	245, 266, 714
BciT130I	CCWGG	2 cut(s)	20, 562
BcnI	CCSGG	1 cut(s)	197
BcoDI	GTCTC	3 cut(s)	32, 205, 416
BfaI	CTAG	1 cut(s)	122
BfmI	CTRYAG	2 cut(s)	362, 601
BfoI	RGCGCY	3 cut(s)	189, 300, 500
BglI	GCCNNNNNGGC	1 cut(s)	183
BisI	GCNGC	5 cut(s)	100, 193, 209, 362, 757
BlpI	GCTNAGC	1 cut(s)	86
BlsI	GCNGC	5 cut(s)	101, 194, 210, 363, 758
Bme1390I	CCNGG	3 cut(s)	20, 197, 562
Bme18I	GGWCC	1 cut(s)	564
BmeT110I	CYCGRG	1 cut(s)	341
BmgT120I	GGNCC	2 cut(s)	72, 564
BmiI	GGNNCC	2 cut(s)	187, 298
BmrFI	CCNGG	3 cut(s)	20, 197, 562
BmsI	GCATC	2 cut(s)	147, 743
BpiI	GAAGAC	1 cut(s)	701
Bpu1102I	GCTNAGC	1 cut(s)	86
BpuMI	CCSGG	1 cut(s)	197
BsaAI	YACGTR	1 cut(s)	547
BsaBI	GATNNNNATC	1 cut(s)	62
BsaHI	GRCGYC	2 cut(s)	186, 297
BsaI	GGTCTC	2 cut(s)	32, 205
BsaJI	CCNNGG	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	8 cut(s)	81, 160, 195, 321, 390, 527, 561, 736
Bse118I	RCCGGY	1 cut(s)	173
Bse1I	ACTGG	2 cut(s)	231, 395
Bse8I	GATNNNNATC	1 cut(s)	62
BseBI	CCWGG	2 cut(s)	20, 562
BseDI	CCNNGG	1 cut(s)	142
BseGI	GGATG	4 cut(s)	138, 465, 532, 758
BseJI	GATNNNNATC	1 cut(s)	62
BseLI	CCNNNNNNNGG	8 cut(s)	81, 160, 195, 321, 390, 527, 561, 736
BseMII	CTCAG	2 cut(s)	77, 474
BseNI	ACTGG	2 cut(s)	231, 395
BseRI	GAGGAG	2 cut(s)	20, 230
BseXI	GCAGC	5 cut(s)	111, 179, 195, 348, 743
Bsh1236I	CGCG	1 cut(s)	761
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	4 cut(s)	74, 173, 177, 701
BshNI	GGYRCC	2 cut(s)	185, 296
BsiEI	CGRYCG	1 cut(s)	66
BsiHKCI	CYCGRG	1 cut(s)	341
BsiSI	CCGG	4 cut(s)	75, 174, 196, 300
BslFI	GGGAC	3 cut(s)	359, 458, 794
BslI	CCNNNNNNNGG	8 cut(s)	81, 160, 195, 321, 390, 527, 561, 736
BsmAI	GTCTC	3 cut(s)	32, 205, 416
BsmFI	GGGAC	3 cut(s)	359, 458, 794
BsnI	GGCC	4 cut(s)	74, 173, 177, 701
Bso31I	GGTCTC	2 cut(s)	32, 205
BsoBI	CYCGRG	1 cut(s)	341
Bsp143I	GATC	2 cut(s)	63, 399
Bsp1720I	GCTNAGC	1 cut(s)	86
BspANI	GGCC	4 cut(s)	74, 173, 177, 701
BspCNI	CTCAG	2 cut(s)	78, 475
BspFNI	CGCG	1 cut(s)	761
BspLI	GGNNCC	2 cut(s)	187, 298
BspMAI	CTGCAG	2 cut(s)	366, 605
BspT107I	GGYRCC	2 cut(s)	185, 296
BspTNI	GGTCTC	2 cut(s)	32, 205
BsrFI	RCCGGY	1 cut(s)	173
BsrI	ACTGG	2 cut(s)	231, 395
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	142
BssMI	GATC	2 cut(s)	63, 399
BssNI	GRCGYC	2 cut(s)	186, 297
BssSI	CACGAG	1 cut(s)	202
Bst2BI	CACGAG	1 cut(s)	202
Bst2UI	CCWGG	2 cut(s)	20, 562
Bst4CI	ACNGT	3 cut(s)	583, 644, 801
Bst6I	CTCTTC	2 cut(s)	260, 362
BstACI	GRCGYC	2 cut(s)	186, 297
BstAPI	GCANNNNNTGC	2 cut(s)	361, 429
BstBAI	YACGTR	1 cut(s)	547
BstC8I	GCNNGC	4 cut(s)	92, 171, 175, 190
BstDEI	CTNAG	2 cut(s)	86, 483
BstF5I	GGATG	4 cut(s)	138, 465, 532, 758
BstFNI	CGCG	1 cut(s)	761
BstH2I	RGCGCY	3 cut(s)	189, 300, 500
BstHHI	GCGC	4 cut(s)	188, 299, 499, 761
BstKTI	GATC	2 cut(s)	66, 402
BstMAI	GTCTC	3 cut(s)	32, 205, 416
BstMBI	GATC	2 cut(s)	63, 399
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	8 cut(s)	91, 96, 166, 183, 192, 361, 429, 503
BstNI	CCWGG	2 cut(s)	20, 562
BstSCI	CCNGG	3 cut(s)	18, 195, 560
BstSFI	CTRYAG	2 cut(s)	362, 601
BstUI	CGCG	1 cut(s)	761
BstV1I	GCAGC	5 cut(s)	111, 179, 195, 348, 743
BstV2I	GAAGAC	1 cut(s)	701
BsuRI	GGCC	4 cut(s)	74, 173, 177, 701
BtsCI	GGATG	4 cut(s)	138, 465, 532, 758
BtsI	GCAGTG	2 cut(s)	362, 610
BtsIMutI	CAGTG	2 cut(s)	362, 610
Cac8I	GCNNGC	4 cut(s)	92, 171, 175, 190
CaiI	CAGNNNCTG	1 cut(s)	361
CfoI	GCGC	4 cut(s)	188, 299, 499, 761
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	2 cut(s)	72, 564
CsiI	ACCWGGT	1 cut(s)	18
Csp6I	GTAC	2 cut(s)	325, 334
CviAII	CATG	2 cut(s)	232, 609
CviQI	GTAC	2 cut(s)	325, 334
DdeI	CTNAG	2 cut(s)	86, 483
DinI	GGCGCC	2 cut(s)	187, 298
DpnI	GATC	2 cut(s)	65, 401
DpnII	GATC	2 cut(s)	63, 399
DraIII	CACNNNGTG	1 cut(s)	108
DrdI	GACNNNNNNGTC	2 cut(s)	131, 425
DseDI	GACNNNNNNGTC	2 cut(s)	131, 425
EaeI	YGGCCR	2 cut(s)	171, 699
Eam1104I	CTCTTC	2 cut(s)	260, 362
EarI	CTCTTC	2 cut(s)	260, 362
Eco31I	GGTCTC	2 cut(s)	32, 205
Eco47I	GGWCC	1 cut(s)	564
Eco47III	AGCGCT	1 cut(s)	498
Eco57I	CTGAAG	1 cut(s)	485
Eco88I	CYCGRG	1 cut(s)	341
EcoRII	CCWGG	2 cut(s)	18, 560
EgeI	GGCGCC	2 cut(s)	187, 298
EheI	GGCGCC	2 cut(s)	187, 298
FaeI	CATG	2 cut(s)	235, 612
FaiI	YATR	6 cut(s)	41, 82, 233, 453, 557, 610
FaqI	GGGAC	3 cut(s)	359, 458, 794
FatI	CATG	2 cut(s)	231, 608
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	5 cut(s)	100, 193, 209, 362, 757
FokI	GGATG	4 cut(s)	125, 452, 539, 765
FseI	GGCCGGCC	1 cut(s)	177
Fsp4HI	GCNGC	5 cut(s)	100, 193, 209, 362, 757
FspBI	CTAG	1 cut(s)	122
GlaI	GCGC	4 cut(s)	187, 298, 498, 760
GluI	GCNGC	5 cut(s)	100, 193, 209, 362, 757
HaeII	RGCGCY	3 cut(s)	189, 300, 500
HaeIII	GGCC	4 cut(s)	74, 173, 177, 701
HapII	CCGG	4 cut(s)	75, 174, 196, 300
HhaI	GCGC	4 cut(s)	188, 299, 499, 761
Hin1I	GRCGYC	2 cut(s)	186, 297
Hin1II	CATG	2 cut(s)	235, 612
Hin6I	GCGC	4 cut(s)	186, 297, 497, 759
HinP1I	GCGC	4 cut(s)	186, 297, 497, 759
HincII	GTYRAC	2 cut(s)	376, 709
HindII	GTYRAC	2 cut(s)	376, 709
HinfI	GANTC	1 cut(s)	58
HpaI	GTTAAC	1 cut(s)	376
HpaII	CCGG	4 cut(s)	75, 174, 196, 300
HphI	GGTGA	2 cut(s)	256, 277
Hpy166II	GTNNAC	3 cut(s)	220, 376, 709
Hpy188I	TCNGA	3 cut(s)	63, 484, 526
Hpy188III	TCNNGA	3 cut(s)	154, 403, 469
Hpy8I	GTNNAC	3 cut(s)	220, 376, 709
HpyAV	CCTTC	2 cut(s)	286, 484
HpyCH4III	ACNGT	3 cut(s)	583, 644, 801
HpyCH4IV	ACGT	3 cut(s)	44, 546, 675
HpyCH4V	TGCA	4 cut(s)	364, 603, 608, 654
HpyF10VI	GCNNNNNNNGC	8 cut(s)	91, 96, 166, 183, 192, 361, 429, 503
HpyF3I	CTNAG	2 cut(s)	86, 483
HpySE526I	ACGT	3 cut(s)	44, 546, 675
Hsp92I	GRCGYC	2 cut(s)	186, 297
Hsp92II	CATG	2 cut(s)	235, 612
HspAI	GCGC	4 cut(s)	186, 297, 497, 759
KasI	GGCGCC	2 cut(s)	185, 296
KroI	GCCGGC	1 cut(s)	173
KroNI	GCCGGC	1 cut(s)	175
KspAI	GTTAAC	1 cut(s)	376
Kzo9I	GATC	2 cut(s)	63, 399
Lsp1109I	GCAGC	5 cut(s)	111, 179, 195, 348, 743
LweI	GCATC	2 cut(s)	147, 743
MabI	ACCWGGT	1 cut(s)	18
MaeI	CTAG	1 cut(s)	122
MaeII	ACGT	3 cut(s)	44, 546, 675
MaeIII	GTNAC	3 cut(s)	262, 283, 547
MalI	GATC	2 cut(s)	65, 401
MboI	GATC	2 cut(s)	63, 399
MboII	GAAGA	6 cut(s)	247, 262, 379, 703, 706, 718
MluCI	AATT	2 cut(s)	436, 685
Mly113I	GGCGCC	2 cut(s)	186, 297
MmeI	TCCRAC	2 cut(s)	615, 730
MnlI	CCTC	9 cut(s)	41, 152, 248, 251, 263, 314, 363, 598, 740
MroNI	GCCGGC	1 cut(s)	173
MroXI	GAANNNNTTC	1 cut(s)	627
MseI	TTAA	1 cut(s)	375
MslI	CAYNNNNRTG	1 cut(s)	737
MspI	CCGG	4 cut(s)	75, 174, 196, 300
MspR9I	CCNGG	3 cut(s)	20, 197, 562
MvaI	CCWGG	2 cut(s)	20, 562
MvnI	CGCG	1 cut(s)	761
MwoI	GCNNNNNNNGC	8 cut(s)	91, 96, 166, 183, 192, 361, 429, 503
NaeI	GCCGGC	1 cut(s)	175
NarI	GGCGCC	2 cut(s)	186, 297
NciI	CCSGG	1 cut(s)	197
NdeII	GATC	2 cut(s)	63, 399
NgoMIV	GCCGGC	1 cut(s)	173
NlaIII	CATG	2 cut(s)	235, 612
NlaIV	GGNNCC	2 cut(s)	187, 298
NmeAIII	GCCGAG	1 cut(s)	123
NmuCI	GTSAC	3 cut(s)	262, 283, 547
PcsI	WCGNNNNNNNCGW	2 cut(s)	279, 579
PdiI	GCCGGC	1 cut(s)	175
PdmI	GAANNNNTTC	1 cut(s)	627
PfeI	GAWTC	1 cut(s)	58
PflMI	CCANNNNNTGG	3 cut(s)	390, 527, 561
PfoI	TCCNGGA	1 cut(s)	560
PkrI	GCNGC	5 cut(s)	101, 194, 210, 363, 758
Ple19I	CGATCG	1 cut(s)	66
PluTI	GGCGCC	2 cut(s)	189, 300
Ppu21I	YACGTR	1 cut(s)	547
Psp1406I	AACGTT	1 cut(s)	44
Psp6I	CCWGG	2 cut(s)	18, 560
PspGI	CCWGG	2 cut(s)	18, 560
PspN4I	GGNNCC	2 cut(s)	187, 298
PspPI	GGNCC	2 cut(s)	72, 564
PstI	CTGCAG	2 cut(s)	366, 605
PstNI	CAGNNNCTG	1 cut(s)	361
PvuI	CGATCG	1 cut(s)	66
RigI	GGCCGGCC	1 cut(s)	177
RsaI	GTAC	2 cut(s)	326, 335
RsaNI	GTAC	2 cut(s)	325, 334
RseI	CAYNNNNRTG	1 cut(s)	737
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	5 cut(s)	100, 193, 209, 362, 757
Sau3AI	GATC	2 cut(s)	63, 399
Sau96I	GGNCC	2 cut(s)	72, 564
ScrFI	CCNGG	3 cut(s)	20, 197, 562
SexAI	ACCWGGT	1 cut(s)	18
SfaNI	GCATC	2 cut(s)	147, 743
SfcI	CTRYAG	2 cut(s)	362, 601
SfoI	GGCGCC	2 cut(s)	187, 298
SinI	GGWCC	1 cut(s)	564
SmiMI	CAYNNNNRTG	1 cut(s)	737
Sse9I	AATT	2 cut(s)	436, 685
SspDI	GGCGCC	2 cut(s)	185, 296
SspMI	CTAG	1 cut(s)	122
StyD4I	CCNGG	3 cut(s)	18, 195, 560
TaaI	ACNGT	3 cut(s)	583, 644, 801
TaiI	ACGT	3 cut(s)	47, 549, 678
TaqI	TCGA	1 cut(s)	56
TasI	AATT	2 cut(s)	436, 685
TatI	WGTACW	1 cut(s)	333
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	2 cut(s)	362, 610
TseFI	GTSAC	3 cut(s)	262, 283, 547
TseI	GCWGC	5 cut(s)	99, 192, 208, 361, 756
Tsp45I	GTSAC	3 cut(s)	262, 283, 547
TspDTI	ATGAA	2 cut(s)	28, 636
TspRI	CASTG	2 cut(s)	362, 610
Van91I	CCANNNNNTGG	3 cut(s)	390, 527, 561
VpaK11BI	GGWCC	1 cut(s)	564
XmiI	GTMKAC	1 cut(s)	219
XmnI	GAANNNNTTC	1 cut(s)	627
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.