Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012238

Physical Location & Seq

Genomic Coordinates Forward (+)

10199675 .. 10201095

Gene Structure 1421 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G23970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGTTAATGAGCAAAAGAGATTTGCTTTGTTTCTTGCTACGAGCGATTCAACGTTCGTGAAGAAAGCGTATGGAGGCTATTTCAACGTGTTTGTTTCGACTTTTGGTGAAGATGGTGAGCAATGGGATCTGTTTCGAGTGATCGACGGCGAGTTTCCTGACGATAAGGATCTGGATAAGTACGATGGTTTTGTTATTAGTGGAAGCCTTAACGATGCTTTTGGTGATGATGATTGGATCGTTAAGCTTTGTTCTCTTTGCCAAAAGCTTGACGACATGAAGAAGAAGGTTCTTGGTATCTGCTTTGGCCACCAGATACTAAGTAGAATCAAAGGAGGGAAAGTCGGAAGGGCGAGTAGAGGTTTGGATATGGGACTAAGAAGCATAACAATGGTTACAGACGCGGTGAAGCCAGGTGGTTACTTTGGAAGCCAGATTCCGAAATCACTAGCCATTATAAAATGCCATCAAGATGAAGTTCTTGAACTCCCTGAATCAGCCACATTGCTTGCTTATTCAGACAAATACAACGTTGAGATGTGTTCGTATGGAAACCACTTGCTAGGCATCCAAGGCCATCCTGAGTACAACAAAGAGATTCTTTTCGAGATCATTGATCGTGTCGTCAATTTGAAGTTGATGGAGCAAGATTTTGCGGATAAGGCGAAGGCAACGATGGAAAACGCGGAACCAGATCGGAAGCAATGGCAGACTCTCTGCAAAAACTTTCTCAAAGGAAGATCCGAGCAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006508 GO:0006725 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008242 GO:0009058 GO:0009403 GO:0009404 GO:0009700 GO:0009987 GO:0010120 GO:0016143 GO:0016787 GO:0018130 GO:0019438 GO:0019538 GO:0019748 GO:0019757 GO:0019760 GO:0034641 GO:0034722 GO:0042430 GO:0042435 GO:0043170 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046217 GO:0046483 GO:0052314 GO:0052315 GO:0052317 GO:0070011 GO:0071704 GO:0140096 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATase

Protein Analysis

251

Amino Acids

28.31

Weight (kDa)

5.35

Isoelectric Point (pI)

24.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase	PF00117	55 - 197	3.4e-13	Glutamine amidotransferase class-I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23970 AT4G30550
fragaria_vesca	FvH4_7g12720 FvH4_7g12720
malus_domestica	MD13G1275500.v1.1 MD16G1259000.v1.1
prunus_persica	Prupe.1G101400_v2.0.a1
pyrus_communis	pycom16g22650
rosa_chinensis	RchiOBHm_Chr4g0405351
rosa_laevigata	RLG00000008849
rosa_multiflora	Rmu_sc0000161.1_g000077
rosa_roxburghii	Rroxscaffold_5G00349780
rosa_rugosa	Rorug04G0057600
rosa_samantha	Rh4AG131100 Rh4BG125700 Rh4CG137800 Rh4CG138000 Rh4DG125100
rosa_wichuraiana	Rw4G010620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	458
AccII	CGCG	2 cut(s)	404, 686
AciI	CCGC	3 cut(s)	404, 656, 686
AclI	AACGTT	2 cut(s)	53, 531
AclWI	GGATC	4 cut(s)	135, 177, 245, 735
AcoI	YGGCCR	1 cut(s)	307
AfaI	GTAC	2 cut(s)	182, 587
AflIII	ACRYGT	1 cut(s)	87
AgsI	TTSAA	4 cut(s)	51, 85, 485, 634
AjnI	CCWGG	1 cut(s)	412
AluBI	AGCT	2 cut(s)	247, 268
AluI	AGCT	2 cut(s)	247, 268
AlwI	GGATC	4 cut(s)	135, 177, 245, 735
AoxI	GGCC	2 cut(s)	307, 574
AsuHPI	GGTGA	4 cut(s)	119, 128, 236, 418
BalI	TGGCCA	1 cut(s)	309
BccI	CCATC	6 cut(s)	107, 179, 474, 585, 634, 670
BceAI	ACGGC	1 cut(s)	163
BciT130I	CCWGG	1 cut(s)	414
BfaI	CTAG	2 cut(s)	449, 563
Bme1390I	CCNGG	1 cut(s)	414
BmiI	GGNNCC	1 cut(s)	690
BmrFI	CCNGG	1 cut(s)	414
BmsI	GCATC	2 cut(s)	205, 576
BsaBI	GATNNNNATC	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	571
BsaXI	ACNNNNNCTCC	2 cut(s)	327, 357
Bse3DI	GCAATG	3 cut(s)	128, 503, 710
Bse8I	GATNNNNATC	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	414
BseDI	CCNNGG	1 cut(s)	571
BseGI	GGATG	2 cut(s)	567, 577
BseJI	GATNNNNATC	1 cut(s)	168
BseMI	GCAATG	3 cut(s)	128, 503, 710
BseMII	CTCAG	1 cut(s)	573
Bsh1236I	CGCG	2 cut(s)	404, 686
BshFI	GGCC	2 cut(s)	309, 576
BslFI	GGGAC	1 cut(s)	387
BsmFI	GGGAC	1 cut(s)	387
BsnI	GGCC	2 cut(s)	309, 576
Bsp143I	GATC	8 cut(s)	127, 141, 169, 237, 609, 616, 694, 740
BspACI	CCGC	3 cut(s)	404, 656, 686
BspANI	GGCC	2 cut(s)	309, 576
BspCNI	CTCAG	1 cut(s)	574
BspFNI	CGCG	2 cut(s)	404, 686
BspLI	GGNNCC	1 cut(s)	690
BspPI	GGATC	4 cut(s)	135, 177, 245, 735
BsrDI	GCAATG	3 cut(s)	128, 503, 710
BssECI	CCNNGG	1 cut(s)	571
BssMI	GATC	8 cut(s)	127, 141, 169, 237, 609, 616, 694, 740
BssT1I	CCWWGG	1 cut(s)	571
Bst2UI	CCWGG	1 cut(s)	414
BstC8I	GCNNGC	1 cut(s)	510
BstDEI	CTNAG	3 cut(s)	320, 377, 582
BstF5I	GGATG	2 cut(s)	567, 577
BstFNI	CGCG	2 cut(s)	404, 686
BstKTI	GATC	8 cut(s)	130, 144, 172, 240, 612, 619, 697, 743
BstMBI	GATC	8 cut(s)	127, 141, 169, 237, 609, 616, 694, 740
BstMWI	GCNNNNNNNGC	2 cut(s)	573, 662
BstNI	CCWGG	1 cut(s)	414
BstSCI	CCNGG	1 cut(s)	412
BstUI	CGCG	2 cut(s)	404, 686
BstX2I	RGATCY	3 cut(s)	127, 169, 740
BstYI	RGATCY	3 cut(s)	127, 169, 740
BsuRI	GGCC	2 cut(s)	309, 576
BtsCI	GGATG	2 cut(s)	567, 577
Cac8I	GCNNGC	1 cut(s)	510
CseI	GACGC	1 cut(s)	410
Csp6I	GTAC	2 cut(s)	181, 586
CspCI	CAANNNNNGTGG	2 cut(s)	490, 525
CviAII	CATG	1 cut(s)	277
CviQI	GTAC	2 cut(s)	181, 586
DdeI	CTNAG	3 cut(s)	320, 377, 582
DpnI	GATC	8 cut(s)	129, 143, 171, 239, 611, 618, 696, 742
DpnII	GATC	8 cut(s)	127, 141, 169, 237, 609, 616, 694, 740
EaeI	YGGCCR	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	571
EcoRII	CCWGG	1 cut(s)	412
EcoT14I	CCWWGG	1 cut(s)	571
ErhI	CCWWGG	1 cut(s)	571
FaeI	CATG	1 cut(s)	280
FaiI	YATR	6 cut(s)	72, 278, 371, 386, 458, 549
FalI	AAGNNNNNCTT	2 cut(s)	585, 617
FaqI	GGGAC	1 cut(s)	387
FatI	CATG	1 cut(s)	276
FokI	GGATG	2 cut(s)	554, 564
FspBI	CTAG	2 cut(s)	449, 563
HaeIII	GGCC	2 cut(s)	309, 576
HgaI	GACGC	1 cut(s)	410
Hin1II	CATG	1 cut(s)	280
HindIII	AAGCTT	2 cut(s)	245, 266
HinfI	GANTC	6 cut(s)	47, 327, 436, 494, 598, 712
HphI	GGTGA	4 cut(s)	119, 128, 236, 418
Hpy188I	TCNGA	5 cut(s)	347, 441, 520, 699, 745
Hpy188III	TCNNGA	7 cut(s)	58, 158, 173, 470, 482, 581, 607
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	3 cut(s)	280, 342, 661
HpyCH4IV	ACGT	3 cut(s)	53, 87, 531
HpyCH4V	TGCA	1 cut(s)	720
HpyF10VI	GCNNNNNNNGC	2 cut(s)	573, 662
HpyF3I	CTNAG	3 cut(s)	320, 377, 582
HpySE526I	ACGT	3 cut(s)	53, 87, 531
Hsp92II	CATG	1 cut(s)	280
Kzo9I	GATC	8 cut(s)	127, 141, 169, 237, 609, 616, 694, 740
LmnI	GCTCC	1 cut(s)	643
LpnPI	CCDG	9 cut(s)	158, 171, 326, 399, 426, 446, 504, 594, 705
LweI	GCATC	2 cut(s)	205, 576
MaeI	CTAG	2 cut(s)	449, 563
MaeII	ACGT	3 cut(s)	53, 87, 531
MaeIII	GTNAC	2 cut(s)	394, 419
MalI	GATC	8 cut(s)	129, 143, 171, 239, 611, 618, 696, 742
MboI	GATC	8 cut(s)	127, 141, 169, 237, 609, 616, 694, 740
MboII	GAAGA	5 cut(s)	73, 122, 292, 295, 750
MflI	RGATCY	3 cut(s)	127, 169, 740
MlsI	TGGCCA	1 cut(s)	309
MluCI	AATT	1 cut(s)	628
MluNI	TGGCCA	1 cut(s)	309
MlyI	GAGTC	1 cut(s)	706
MmeI	TCCRAC	1 cut(s)	325
MnlI	CCTC	3 cut(s)	68, 329, 353
Mox20I	TGGCCA	1 cut(s)	309
MscI	TGGCCA	1 cut(s)	309
MseI	TTAA	4 cut(s)	6, 210, 243, 754
MslI	CAYNNNNRTG	2 cut(s)	389, 471
Msp20I	TGGCCA	1 cut(s)	309
MspR9I	CCNGG	1 cut(s)	414
MvaI	CCWGG	1 cut(s)	414
MvnI	CGCG	2 cut(s)	404, 686
MwoI	GCNNNNNNNGC	2 cut(s)	573, 662
NdeII	GATC	8 cut(s)	127, 141, 169, 237, 609, 616, 694, 740
NlaIII	CATG	1 cut(s)	280
NlaIV	GGNNCC	1 cut(s)	690
PfeI	GAWTC	5 cut(s)	47, 327, 436, 494, 598
PleI	GAGTC	1 cut(s)	706
PpsI	GAGTC	1 cut(s)	706
PsiI	TTATAA	1 cut(s)	458
Psp1406I	AACGTT	2 cut(s)	53, 531
Psp6I	CCWGG	1 cut(s)	412
PspGI	CCWGG	1 cut(s)	412
PspN4I	GGNNCC	1 cut(s)	690
PsuI	RGATCY	3 cut(s)	127, 169, 740
RsaI	GTAC	2 cut(s)	182, 587
RsaNI	GTAC	2 cut(s)	181, 586
RseI	CAYNNNNRTG	2 cut(s)	389, 471
SaqAI	TTAA	4 cut(s)	6, 210, 243, 754
Sau3AI	GATC	8 cut(s)	127, 141, 169, 237, 609, 616, 694, 740
SchI	GAGTC	1 cut(s)	706
ScrFI	CCNGG	1 cut(s)	414
SetI	ASST	8 cut(s)	56, 90, 249, 270, 291, 364, 418, 534
SfaNI	GCATC	2 cut(s)	205, 576
SmiMI	CAYNNNNRTG	2 cut(s)	389, 471
Sse9I	AATT	1 cut(s)	628
SsiI	CCGC	3 cut(s)	404, 656, 686
SspMI	CTAG	2 cut(s)	449, 563
StyD4I	CCNGG	1 cut(s)	412
StyI	CCWWGG	1 cut(s)	571
TaiI	ACGT	3 cut(s)	56, 90, 534
TaqI	TCGA	4 cut(s)	98, 136, 144, 606
TasI	AATT	1 cut(s)	628
TatI	WGTACW	1 cut(s)	585
TfiI	GAWTC	5 cut(s)	47, 327, 436, 494, 598
Tru1I	TTAA	4 cut(s)	6, 210, 243, 754
Tru9I	TTAA	4 cut(s)	6, 210, 243, 754
TspDTI	ATGAA	2 cut(s)	293, 489
XspI	CTAG	2 cut(s)	449, 563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.