AT4G30550

glutamine amidotransferase YLR126C

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
14925407 .. 14926861
1455 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G30550.1

Sequence Viewer

Length: 750 bp
ATGGTGGTTATTGAGCAGAAGAAGAGGTTTGCTTTGTTTTTAGCGACGTGTGATTCAGAGTTCGTGAAGAAGACTTACGGTGGTTACTTCAATGTCTTCGTTTCAACTTTCGGCGAAGAAGGTGAGCAATGGGATCTATTCCGAGTCATCGACGGACAATTTCCCGACGAGAATGATTTAGACAAGTACGACGGTTTCGTTATCAGTGGTAGTCCACATGATGCTTTCGGAGACGCCGATTGGATTGTTAAGCTTTGCGAAGTTTGTCAGAAACTTGATCACATGAAGAAGAAAGTTCTCGGCATCTGCTTCGGCCACCAGATAATTACTAGAGTTAAAGGTGGGAAGATAGGAAGAGCACTCAAAGGTGCAGATATGGGACTTAGAAGCATAACCATAGCGAAAGACAATGAAAAACTACGAGGTTACTTTGGAGACGTTGAGGTCCCAGCATCTTTAGCTATTATAAAATGTCATCAGGATGAAGTGTTGGAACTTCCTGAGTCTGCTACACTACTTGCTTCTTCTGAGGTATGTAACGTCGAGATGTTCTCTATTGGAGATCATTTTTTCTGTATTCAAGGGCATCCAGAGTATAACAAAGAGATTCTGTTTGAGATTGTGGACCGAGTCCTTAATATGAAGCTGATGGAGCAAGAGTTTGCGGATAAGGCAAAGAGTACGATGGAGACTGCGCAACCAGACAGGATTCTATGGCAGAAGCTCTGCAAAAACTTCCTGAAAGGTTGA

Protein Analysis

249

Amino Acids

28.22

Weight (kDa)

5.35

Isoelectric Point (pI)

28.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATase PF00117 55 - 200 6e-14 Glutamine amidotransferase class-I
HTS PF04204 61 - 216 8.5e-08 Homoserine O-succinyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012238)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 467
AasI GACNNNNNNGTC 1 cut(s) 443
Acc16I TGCGCA 1 cut(s) 696
AciI CCGC 1 cut(s) 665
AclWI GGATC 1 cut(s) 141
AcoI YGGCCR 1 cut(s) 313
AcyI GRCGYC 1 cut(s) 234
AfaI GTAC 2 cut(s) 188, 682
AflIII ACRYGT 1 cut(s) 47
AgsI TTSAA 3 cut(s) 91, 105, 581
AjiI CACGTC 1 cut(s) 48
AluBI AGCT 4 cut(s) 253, 461, 646, 724
AluI AGCT 4 cut(s) 253, 461, 646, 724
Alw21I GWGCWC 1 cut(s) 361
Alw26I GTCTC 3 cut(s) 225, 429, 683
AlwI GGATC 1 cut(s) 141
AoxI GGCC 1 cut(s) 313
AspLEI GCGC 1 cut(s) 697
AspS9I GGNCC 2 cut(s) 445, 625
AsuHPI GGTGA 1 cut(s) 134
AvaII GGWCC 2 cut(s) 445, 625
BarI GAAGNNNNNNTAC 2 cut(s) 59, 91
BbsI GAAGAC 2 cut(s) 77, 88
Bbv12I GWGCWC 1 cut(s) 361
BccI CCATC 2 cut(s) 643, 679
BcgI CGANNNNNNTGC 2 cut(s) 292, 326
BclI TGATCA 1 cut(s) 277
BcoDI GTCTC 3 cut(s) 225, 429, 683
BfaI CTAG 1 cut(s) 330
Bme18I GGWCC 2 cut(s) 445, 625
BmgBI CACGTC 1 cut(s) 48
BmgT120I GGNCC 2 cut(s) 445, 625
BmiI GGNNCC 1 cut(s) 447
BmsI GCATC 4 cut(s) 211, 312, 461, 595
BpiI GAAGAC 2 cut(s) 77, 88
BplI GAGNNNNNCTC 2 cut(s) 536, 568
BsaHI GRCGYC 1 cut(s) 234
BsaXI ACNNNNNCTCC 2 cut(s) 644, 674
Bse3DI GCAATG 1 cut(s) 134
BseGI GGATG 2 cut(s) 487, 586
BseMI GCAATG 1 cut(s) 134
BseMII CTCAG 2 cut(s) 492, 519
BseYI CCCAGC 1 cut(s) 448
BsgI GTGCAG 1 cut(s) 390
BshFI GGCC 1 cut(s) 315
BsiHKAI GWGCWC 1 cut(s) 361
BslFI GGGAC 2 cut(s) 393, 431
BsmAI GTCTC 3 cut(s) 225, 429, 683
BsmBI CGTCTC 2 cut(s) 225, 429
BsmFI GGGAC 2 cut(s) 393, 431
BsnI GGCC 1 cut(s) 315
Bsp1286I GDGCHC 1 cut(s) 361
Bsp143I GATC 3 cut(s) 133, 277, 562
BspACI CCGC 1 cut(s) 665
BspANI GGCC 1 cut(s) 315
BspCNI CTCAG 2 cut(s) 493, 520
BspLI GGNNCC 1 cut(s) 447
BspPI GGATC 1 cut(s) 141
BspQI GCTCTTC 1 cut(s) 349
BsrDI GCAATG 1 cut(s) 134
BssMI GATC 3 cut(s) 133, 277, 562
BssNI GRCGYC 1 cut(s) 234
Bst4CI ACNGT 2 cut(s) 80, 194
Bst6I CTCTTC 2 cut(s) 17, 349
BstACI GRCGYC 1 cut(s) 234
BstDEI CTNAG 3 cut(s) 383, 501, 528
BstF5I GGATG 2 cut(s) 487, 586
BstHHI GCGC 1 cut(s) 697
BstKTI GATC 3 cut(s) 136, 280, 565
BstMAI GTCTC 3 cut(s) 225, 429, 683
BstMBI GATC 3 cut(s) 133, 277, 562
BstMWI GCNNNNNNNGC 3 cut(s) 458, 652, 671
BstV2I GAAGAC 2 cut(s) 77, 88
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BsuRI GGCC 1 cut(s) 315
BtrI CACGTC 1 cut(s) 48
BtsCI GGATG 2 cut(s) 487, 586
BtsIMutI CAGTG 1 cut(s) 211
CfoI GCGC 1 cut(s) 697
Cfr13I GGNCC 2 cut(s) 445, 625
CseI GACGC 1 cut(s) 242
Csp6I GTAC 2 cut(s) 187, 681
CviAII CATG 2 cut(s) 218, 283
CviJI RGCY 5 cut(s) 253, 315, 461, 646, 724
CviKI_1 RGCY 5 cut(s) 253, 315, 461, 646, 724
CviQI GTAC 2 cut(s) 187, 681
DdeI CTNAG 3 cut(s) 383, 501, 528
DpnI GATC 3 cut(s) 135, 279, 564
DpnII GATC 3 cut(s) 133, 277, 562
DrdI GACNNNNNNGTC 1 cut(s) 443
DseDI GACNNNNNNGTC 1 cut(s) 443
EaeI YGGCCR 1 cut(s) 313
Eam1104I CTCTTC 2 cut(s) 17, 349
EarI CTCTTC 2 cut(s) 17, 349
Eco47I GGWCC 2 cut(s) 445, 625
EcoO109I RGGNCCY 1 cut(s) 445
Esp3I CGTCTC 2 cut(s) 225, 429
FaeI CATG 2 cut(s) 221, 286
FaqI GGGAC 2 cut(s) 393, 431
FatI CATG 2 cut(s) 217, 282
FbaI TGATCA 1 cut(s) 277
FokI GGATG 2 cut(s) 494, 573
FspBI CTAG 1 cut(s) 330
FspI TGCGCA 1 cut(s) 696
GlaI GCGC 1 cut(s) 696
GsaI CCCAGC 1 cut(s) 452
HaeIII GGCC 1 cut(s) 315
HgaI GACGC 1 cut(s) 242
HhaI GCGC 1 cut(s) 697
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 2 cut(s) 221, 286
Hin6I GCGC 1 cut(s) 695
HinP1I GCGC 1 cut(s) 695
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 6 cut(s) 53, 144, 503, 607, 630, 709
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 2 cut(s) 215, 625
Hpy188I TCNGA 5 cut(s) 58, 143, 230, 270, 529
Hpy188III TCNNGA 7 cut(s) 64, 164, 479, 500, 544, 590, 739
Hpy8I GTNNAC 2 cut(s) 215, 625
Hpy99I CGWCG 5 cut(s) 49, 155, 170, 194, 545
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 2 cut(s) 80, 194
HpyCH4IV ACGT 3 cut(s) 47, 438, 540
HpyCH4V TGCA 2 cut(s) 371, 729
HpyF10VI GCNNNNNNNGC 3 cut(s) 458, 652, 671
HpyF3I CTNAG 3 cut(s) 383, 501, 528
HpySE526I ACGT 3 cut(s) 47, 438, 540
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 2 cut(s) 221, 286
HspAI GCGC 1 cut(s) 695
Ksp22I TGATCA 1 cut(s) 277
Kzo9I GATC 3 cut(s) 133, 277, 562
LguI GCTCTTC 1 cut(s) 349
LmnI GCTCC 1 cut(s) 652
LpnPI CCDG 7 cut(s) 332, 462, 464, 513, 603, 691, 714
LweI GCATC 4 cut(s) 211, 312, 461, 595
MaeI CTAG 1 cut(s) 330
MaeII ACGT 3 cut(s) 47, 438, 540
MaeIII GTNAC 3 cut(s) 83, 425, 536
MalI GATC 3 cut(s) 135, 279, 564
MboI GATC 3 cut(s) 133, 277, 562
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 1 cut(s) 361
MluCI AATT 2 cut(s) 158, 324
MlyI GAGTC 3 cut(s) 153, 512, 639
MmeI TCCRAC 1 cut(s) 471
MnlI CCTC 4 cut(s) 18, 416, 436, 523
MseI TTAA 3 cut(s) 249, 336, 636
MslI CAYNNNNRTG 1 cut(s) 480
MwoI GCNNNNNNNGC 3 cut(s) 458, 652, 671
NdeII GATC 3 cut(s) 133, 277, 562
NlaIII CATG 2 cut(s) 221, 286
NlaIV GGNNCC 1 cut(s) 447
NmeAIII GCCGAG 1 cut(s) 279
NsbI TGCGCA 1 cut(s) 696
PciSI GCTCTTC 1 cut(s) 349
PcsI WCGNNNNNNNCGW 2 cut(s) 195, 234
PfeI GAWTC 3 cut(s) 53, 607, 709
PflFI GACNNNGTC 1 cut(s) 629
PleI GAGTC 3 cut(s) 152, 511, 638
PpsI GAGTC 3 cut(s) 152, 511, 638
PpuMI RGGWCCY 1 cut(s) 445
PsiI TTATAA 1 cut(s) 467
Psp5II RGGWCCY 1 cut(s) 445
PspFI CCCAGC 1 cut(s) 448
PspN4I GGNNCC 1 cut(s) 447
PspPI GGNCC 2 cut(s) 445, 625
PspPPI RGGWCCY 1 cut(s) 445
PsuI RGATCY 1 cut(s) 133
PsyI GACNNNGTC 1 cut(s) 629
RsaI GTAC 2 cut(s) 188, 682
RsaNI GTAC 2 cut(s) 187, 681
RseI CAYNNNNRTG 1 cut(s) 480
SapI GCTCTTC 1 cut(s) 349
SaqAI TTAA 3 cut(s) 249, 336, 636
Sau3AI GATC 3 cut(s) 133, 277, 562
Sau96I GGNCC 2 cut(s) 445, 625
SchI GAGTC 3 cut(s) 153, 512, 639
SduI GDGCHC 1 cut(s) 361
SfaNI GCATC 4 cut(s) 211, 312, 461, 595
SinI GGWCC 2 cut(s) 445, 625
SmiMI CAYNNNNRTG 1 cut(s) 480
Sse9I AATT 2 cut(s) 158, 324
SsiI CCGC 1 cut(s) 665
SspMI CTAG 1 cut(s) 330
TaaI ACNGT 2 cut(s) 80, 194
TaiI ACGT 3 cut(s) 50, 441, 543
TaqI TCGA 2 cut(s) 150, 543
TaqII GACCGA 1 cut(s) 642
TasI AATT 2 cut(s) 158, 324
TfiI GAWTC 3 cut(s) 53, 607, 709
Tru1I TTAA 3 cut(s) 249, 336, 636
Tru9I TTAA 3 cut(s) 249, 336, 636
TscAI CASTG 1 cut(s) 211
TspDTI ATGAA 4 cut(s) 299, 426, 498, 656
TspGWI ACGGA 1 cut(s) 168
TspRI CASTG 1 cut(s) 211
Tth111I GACNNNGTC 1 cut(s) 629
VpaK11BI GGWCC 2 cut(s) 445, 625
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.