Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0012238

Physical Location & Seq

Genomic Coordinates Forward (+)

23026390 .. 23027763

Gene Structure 1374 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00349780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAAGGTTGAAAGAGAACGAAGATACGCGCTTCTGCTTGCAGCAAAGGATTCCGAGTACGTGAAGAAAGTGTATGGTGGTTACTTCAATGTGTTTGTTGCAGCTTTTGGGGAAGAAGGAGAGAGGTGGGACTTGTTCAGGGTAGTCGATGGCGAGTTTCCGGAAACGAGTGAGCTTCAAGATTATGATGGGTTTGTGGTCAGTGGAAGCCCTTATGATGCTTATGGCAATGACCACTGGATAATTAAACTCTGCTTTCTCTTGCAAACTCTGGATGCCATGGAGAAGAAAGTCCTCGGAATTTGCTTCGGTCATCAGGTGTTGTGCAGAGCACTAGGAGGAAAAGTTGGGAAAGCTTGTACTGGATGGGATATTGGACTGAGGAAAGTGAACATAGCGAACGACCTGAGCCCATTTAGCTTCCTTGATGACTTGGATGAAATCCCAGCTGCCCTTTCCATCATTGAGTGCCACCAGGATGAGGTTTGGGAAGTTCCTTTGGGTGCTCAAGTTATTGCCTTCTCGGACAAAACTGGGGTAGAGATGTTCACCATTGGAGGTCATGTTCTGGGCATTCAAGGCCATCCAGAGTATACTAATGATATCCTTTCCAATCTCATCGATCGCCTTCTCAATAACAACTCCATTGAGCTAAGTTTTGCTGAAAACGCAAGATTCGGACTGCAAAAAGCCGAGCCAGATAGGAAGTGTTGGGAGAAAATCTGCAGGAATTTTCTCAAAGATAGATCGATCATCAAGTTAAATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006508 GO:0006725 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008242 GO:0009058 GO:0009403 GO:0009404 GO:0009700 GO:0009987 GO:0010120 GO:0016143 GO:0016787 GO:0018130 GO:0019438 GO:0019538 GO:0019748 GO:0019757 GO:0019760 GO:0034641 GO:0034722 GO:0042430 GO:0042435 GO:0043170 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046217 GO:0046483 GO:0052314 GO:0052315 GO:0052317 GO:0070011 GO:0071704 GO:0140096 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATase

Protein Analysis

256

Amino Acids

28.89

Weight (kDa)

4.99

Isoelectric Point (pI)

39.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase	PF00117	33 - 200	4e-14	Glutamine amidotransferase class-I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23970 AT4G30550
fragaria_vesca	FvH4_7g12720 FvH4_7g12720
malus_domestica	MD13G1275500.v1.1 MD16G1259000.v1.1
prunus_persica	Prupe.1G101400_v2.0.a1
pyrus_communis	pycom16g22650
rosa_chinensis	RchiOBHm_Chr4g0405351
rosa_laevigata	RLG00000008849
rosa_multiflora	Rmu_sc0000161.1_g000077
rosa_roxburghii	Rroxscaffold_5G00349780
rosa_rugosa	Rorug04G0057600
rosa_samantha	Rh4AG131100 Rh4BG125700 Rh4CG137800 Rh4CG138000 Rh4DG125100
rosa_wichuraiana	Rw4G010620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	593
AccII	CGCG	1 cut(s)	29
AccIII	TCCGGA	1 cut(s)	160
AcsI	RAATTY	3 cut(s)	300, 730, 763
AfaI	GTAC	2 cut(s)	59, 361
AfiI	CCNNNNNNNGG	1 cut(s)	481
AgsI	TTSAA	4 cut(s)	11, 88, 179, 578
AjnI	CCWGG	1 cut(s)	474
AloI	GAACNNNNNNTCC	2 cut(s)	549, 581
AluBI	AGCT	6 cut(s)	104, 175, 356, 420, 449, 652
AluI	AGCT	6 cut(s)	104, 175, 356, 420, 449, 652
Alw21I	GWGCWC	2 cut(s)	334, 508
Aor13HI	TCCGGA	1 cut(s)	160
AoxI	GGCC	1 cut(s)	580
ApeKI	GCWGC	3 cut(s)	41, 101, 449
ApoI	RAATTY	3 cut(s)	300, 730, 763
AspLEI	GCGC	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	541
BanII	GRGCYC	1 cut(s)	413
Bbv12I	GWGCWC	2 cut(s)	334, 508
BbvI	GCAGC	3 cut(s)	53, 113, 436
BccI	CCATC	5 cut(s)	143, 182, 360, 467, 591
BciT130I	CCWGG	1 cut(s)	476
BfaI	CTAG	1 cut(s)	335
BfmI	CTRYAG	1 cut(s)	724
BisI	GCNGC	3 cut(s)	42, 102, 450
BlsI	GCNGC	3 cut(s)	43, 103, 451
Bme1390I	CCNGG	1 cut(s)	476
BmrFI	CCNGG	1 cut(s)	476
BmrI	ACTGGG	1 cut(s)	543
BmsI	GCATC	2 cut(s)	208, 265
BmuI	ACTGGG	1 cut(s)	543
Bpu10I	CCTNAGC	1 cut(s)	407
BpuEI	CTTGAG	1 cut(s)	492
Bsa29I	ATCGAT	2 cut(s)	621, 749
BsaAI	YACGTR	1 cut(s)	61
BsaJI	CCNNGG	2 cut(s)	279, 295
BsaWI	WCCGGW	1 cut(s)	160
BsaXI	ACNNNNNCTCC	4 cut(s)	330, 360, 549, 579
Bsc4I	CCNNNNNNNGG	1 cut(s)	481
Bse1I	ACTGG	3 cut(s)	242, 367, 538
Bse3DI	GCAATG	1 cut(s)	235
BseAI	TCCGGA	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	476
BseCI	ATCGAT	2 cut(s)	621, 749
BseDI	CCNNGG	2 cut(s)	279, 295
BseGI	GGATG	5 cut(s)	280, 371, 442, 484, 583
BseLI	CCNNNNNNNGG	1 cut(s)	481
BseMI	GCAATG	1 cut(s)	235
BseMII	CTCAG	2 cut(s)	371, 398
BseNI	ACTGG	3 cut(s)	242, 367, 538
BseXI	GCAGC	3 cut(s)	53, 113, 436
BseYI	CCCAGC	1 cut(s)	445
BsgI	GTGCAG	1 cut(s)	346
Bsh1236I	CGCG	1 cut(s)	29
Bsh1285I	CGRYCG	1 cut(s)	625
BshFI	GGCC	1 cut(s)	582
BshVI	ATCGAT	2 cut(s)	621, 749
BsiEI	CGRYCG	1 cut(s)	625
BsiHKAI	GWGCWC	2 cut(s)	334, 508
BsiSI	CCGG	1 cut(s)	161
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	481
BsmFI	GGGAC	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	573
BsnI	GGCC	1 cut(s)	582
Bsp1286I	GDGCHC	3 cut(s)	334, 413, 508
Bsp13I	TCCGGA	1 cut(s)	160
Bsp143I	GATC	3 cut(s)	622, 746, 750
Bsp19I	CCATGG	1 cut(s)	279
BspANI	GGCC	1 cut(s)	582
BspCNI	CTCAG	2 cut(s)	372, 399
BspDI	ATCGAT	2 cut(s)	621, 749
BspEI	TCCGGA	1 cut(s)	160
BspFNI	CGCG	1 cut(s)	29
BspMAI	CTGCAG	1 cut(s)	728
BsrDI	GCAATG	1 cut(s)	235
BsrI	ACTGG	3 cut(s)	242, 367, 538
BssECI	CCNNGG	2 cut(s)	279, 295
BssMI	GATC	3 cut(s)	622, 746, 750
BssNAI	GTATAC	1 cut(s)	594
BssT1I	CCWWGG	1 cut(s)	279
Bst1107I	GTATAC	1 cut(s)	594
Bst2UI	CCWGG	1 cut(s)	476
BstBAI	YACGTR	1 cut(s)	61
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	3 cut(s)	380, 407, 653
BstDSI	CCRYGG	1 cut(s)	279
BstF5I	GGATG	5 cut(s)	280, 371, 442, 484, 583
BstFNI	CGCG	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	3 cut(s)	625, 749, 753
BstMBI	GATC	3 cut(s)	622, 746, 750
BstMCI	CGRYCG	1 cut(s)	625
BstMWI	GCNNNNNNNGC	3 cut(s)	417, 579, 668
BstNI	CCWGG	1 cut(s)	476
BstSCI	CCNGG	1 cut(s)	474
BstSFI	CTRYAG	1 cut(s)	724
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	3 cut(s)	53, 113, 436
BstZ17I	GTATAC	1 cut(s)	594
Bsu15I	ATCGAT	2 cut(s)	621, 749
BsuRI	GGCC	1 cut(s)	582
BsuTUI	ATCGAT	2 cut(s)	621, 749
BtgI	CCRYGG	1 cut(s)	279
BtsCI	GGATG	5 cut(s)	280, 371, 442, 484, 583
BtsIMutI	CAGTG	2 cut(s)	208, 235
Cac8I	GCNNGC	1 cut(s)	39
CfoI	GCGC	1 cut(s)	31
ClaI	ATCGAT	2 cut(s)	621, 749
Csp6I	GTAC	2 cut(s)	58, 360
CviAII	CATG	2 cut(s)	280, 563
CviQI	GTAC	2 cut(s)	58, 360
DdeI	CTNAG	3 cut(s)	380, 407, 653
DpnI	GATC	3 cut(s)	624, 748, 752
DpnII	GATC	3 cut(s)	622, 746, 750
Eco130I	CCWWGG	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	413
Eco32I	GATATC	1 cut(s)	604
EcoRII	CCWGG	1 cut(s)	474
EcoRV	GATATC	1 cut(s)	604
EcoT14I	CCWWGG	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	413
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	2 cut(s)	283, 566
FaiI	YATR	9 cut(s)	75, 186, 216, 225, 281, 395, 564, 594, 769
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	2 cut(s)	279, 562
FblI	GTMKAC	1 cut(s)	593
Fnu4HI	GCNGC	3 cut(s)	42, 102, 450
FokI	GGATG	5 cut(s)	287, 378, 449, 491, 570
FriOI	GRGCYC	1 cut(s)	413
Fsp4HI	GCNGC	3 cut(s)	42, 102, 450
FspBI	CTAG	1 cut(s)	335
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	3 cut(s)	42, 102, 450
GsaI	CCCAGC	1 cut(s)	449
HaeIII	GGCC	1 cut(s)	582
HapII	CCGG	1 cut(s)	161
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	2 cut(s)	283, 566
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HindIII	AAGCTT	1 cut(s)	354
HinfI	GANTC	2 cut(s)	50, 675
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	1 cut(s)	541
Hpy166II	GTNNAC	3 cut(s)	391, 549, 594
Hpy188I	TCNGA	4 cut(s)	55, 299, 526, 680
Hpy188III	TCNNGA	4 cut(s)	161, 179, 272, 587
Hpy8I	GTNNAC	3 cut(s)	391, 549, 594
HpyAV	CCTTC	3 cut(s)	110, 529, 638
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	6 cut(s)	41, 101, 265, 327, 685, 726
HpyF10VI	GCNNNNNNNGC	3 cut(s)	417, 579, 668
HpyF3I	CTNAG	3 cut(s)	380, 407, 653
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	2 cut(s)	283, 566
HspAI	GCGC	1 cut(s)	29
Kpn2I	TCCGGA	1 cut(s)	160
Kzo9I	GATC	3 cut(s)	622, 746, 750
Lsp1109I	GCAGC	3 cut(s)	53, 113, 436
LweI	GCATC	2 cut(s)	208, 265
MaeI	CTAG	1 cut(s)	335
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	3 cut(s)	624, 748, 752
MboI	GATC	3 cut(s)	622, 746, 750
MboII	GAAGA	4 cut(s)	33, 76, 125, 298
MhlI	GDGCHC	3 cut(s)	334, 413, 508
MluCI	AATT	4 cut(s)	243, 300, 730, 763
MnlI	CCTC	6 cut(s)	117, 305, 332, 375, 475, 551
MroI	TCCGGA	1 cut(s)	160
MseI	TTAA	2 cut(s)	246, 761
MslI	CAYNNNNRTG	1 cut(s)	477
MspA1I	CMGCKG	1 cut(s)	449
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	476
Mva1269I	GAATGC	1 cut(s)	573
MvaI	CCWGG	1 cut(s)	476
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	3 cut(s)	417, 579, 668
NcoI	CCATGG	1 cut(s)	279
NdeII	GATC	3 cut(s)	622, 746, 750
NlaIII	CATG	2 cut(s)	283, 566
NmeAIII	GCCGAG	1 cut(s)	718
PctI	GAATGC	1 cut(s)	573
PfeI	GAWTC	2 cut(s)	50, 675
PkrI	GCNGC	3 cut(s)	43, 103, 451
Ple19I	CGATCG	1 cut(s)	625
Ppu21I	YACGTR	1 cut(s)	61
Psp6I	CCWGG	1 cut(s)	474
PspFI	CCCAGC	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	474
PstI	CTGCAG	1 cut(s)	728
PvuI	CGATCG	1 cut(s)	625
PvuII	CAGCTG	1 cut(s)	449
RsaI	GTAC	2 cut(s)	59, 361
RsaNI	GTAC	2 cut(s)	58, 360
RseI	CAYNNNNRTG	1 cut(s)	477
SaqAI	TTAA	2 cut(s)	246, 761
SatI	GCNGC	3 cut(s)	42, 102, 450
Sau3AI	GATC	3 cut(s)	622, 746, 750
ScrFI	CCNGG	1 cut(s)	476
SduI	GDGCHC	3 cut(s)	334, 413, 508
SfaNI	GCATC	2 cut(s)	208, 265
SfcI	CTRYAG	1 cut(s)	724
SmiMI	CAYNNNNRTG	1 cut(s)	477
SmlI	CTYRAG	1 cut(s)	507
SmoI	CTYRAG	1 cut(s)	507
Sse9I	AATT	4 cut(s)	243, 300, 730, 763
SspMI	CTAG	1 cut(s)	335
StyD4I	CCNGG	1 cut(s)	474
StyI	CCWWGG	1 cut(s)	279
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	3 cut(s)	147, 621, 749
TaqII	GACCGA	1 cut(s)	299
TasI	AATT	4 cut(s)	243, 300, 730, 763
TatI	WGTACW	1 cut(s)	359
TfiI	GAWTC	2 cut(s)	50, 675
Tru1I	TTAA	2 cut(s)	246, 761
Tru9I	TTAA	2 cut(s)	246, 761
TscAI	CASTG	2 cut(s)	208, 242
TseI	GCWGC	3 cut(s)	41, 101, 449
TspDTI	ATGAA	2 cut(s)	17, 453
TspRI	CASTG	2 cut(s)	208, 242
XapI	RAATTY	3 cut(s)	300, 730, 763
XmiI	GTMKAC	1 cut(s)	593
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.