Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012238

Physical Location & Seq

Genomic Coordinates Forward (+)

8072939 .. 8077546

Gene Structure 4608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G101400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGAAGGTTGAAAAACAGGCTAGATATGCACTTCTGCTGGCAGCAAGAGACTCTGAGTATGTGAAGAACGTGTATGGCGGCTACTTCAATGTGTTTGTTGCAGCTTTTGGTGCAGAAGGAGAGAGGTGGGATTTGTACAGAGTTGTAGAGGGAGAGTTTCCTGAGATGAGTGAGCTTGAAAACTATGATGGCTTTGTGATCAGTGGCAGCCCTTATGATGCTTATGGCAATGACCACTGGATCATCAAACTTTGCTTTCTCTTGCAATCTTTGGATGCCATGGAGAAGAAAATCCTCGGCATTTGCTTTGGTCACCAGGTTTTGTGCAGAGCACTGGGAGGAAAGGTTGGGAAGGCTTATACAGGGTGGGATATTGGGCTGAGGAAAGTGAAGATAGTGAAGGACTTGTCACCATTCAGCTTCTTCGACGGATTGGATGAAATCCCACCTGCGCTTTCGATCATCGAGTGCCATCAAGATGAGGTCTTGGAAGTTCCTTTGGGTGCTGAAGTGATCGGATACTCCAACAAGACTGGGGTCGAAATGTTCACCATTGGAGGCCATATTCTTGGCATTCAAGGCCATCCTGAGTACTCCAAGGACATCCTTTATAATCTCATCGACCGCCTTCTCAACAACAACTGCATAGAGAAAGGTTTTGCTGAAAACGCAAGGTCTGCACTGCAATTGGCTGAACCAGACAGGAAGAACTGGGAGAAGATCTGCAAGATTTTTCTCAAGGGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006508 GO:0006725 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008242 GO:0009058 GO:0009403 GO:0009404 GO:0009700 GO:0009987 GO:0010120 GO:0016143 GO:0016787 GO:0018130 GO:0019438 GO:0019538 GO:0019748 GO:0019757 GO:0019760 GO:0034641 GO:0034722 GO:0042430 GO:0042435 GO:0043170 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046217 GO:0046483 GO:0052314 GO:0052315 GO:0052317 GO:0070011 GO:0071704 GO:0140096 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATase

Protein Analysis

250

Amino Acids

28.03

Weight (kDa)

5.36

Isoelectric Point (pI)

38.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23970 AT4G30550
fragaria_vesca	FvH4_7g12720 FvH4_7g12720
malus_domestica	MD13G1275500.v1.1 MD16G1259000.v1.1
prunus_persica	Prupe.1G101400_v2.0.a1
pyrus_communis	pycom16g22650
rosa_chinensis	RchiOBHm_Chr4g0405351
rosa_laevigata	RLG00000008849
rosa_multiflora	Rmu_sc0000161.1_g000077
rosa_roxburghii	Rroxscaffold_5G00349780
rosa_rugosa	Rorug04G0057600
rosa_samantha	Rh4AG131100 Rh4BG125700 Rh4CG137800 Rh4CG138000 Rh4DG125100
rosa_wichuraiana	Rw4G010620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	612
AarI	CACCTGC	1 cut(s)	457
Acc36I	ACCTGC	1 cut(s)	457
AciI	CCGC	2 cut(s)	78, 625
AclWI	GGATC	1 cut(s)	248
AcuI	CTGAAG	1 cut(s)	528
AfaI	GTAC	2 cut(s)	137, 593
AflIII	ACRYGT	1 cut(s)	69
AgsI	TTSAA	4 cut(s)	11, 88, 179, 578
AjnI	CCWGG	1 cut(s)	315
AluBI	AGCT	3 cut(s)	104, 175, 420
AluI	AGCT	3 cut(s)	104, 175, 420
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	1 cut(s)	248
AoxI	GGCC	2 cut(s)	559, 580
ApeKI	GCWGC	3 cut(s)	41, 101, 207
AspLEI	GCGC	1 cut(s)	454
AsuHPI	GGTGA	3 cut(s)	305, 402, 541
Bbv12I	GWGCWC	1 cut(s)	334
BbvCI	CCTCAGC	1 cut(s)	380
BbvI	GCAGC	3 cut(s)	53, 113, 219
BccI	CCATC	3 cut(s)	182, 480, 591
BciT130I	CCWGG	1 cut(s)	317
BciVI	GTATCC	1 cut(s)	512
BclI	TGATCA	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	42
BfaI	CTAG	1 cut(s)	21
BfuAI	ACCTGC	1 cut(s)	457
BfuI	GTATCC	1 cut(s)	512
BglII	AGATCT	1 cut(s)	720
BisI	GCNGC	4 cut(s)	42, 79, 102, 208
BlsI	GCNGC	4 cut(s)	43, 80, 103, 209
BmcAI	AGTACT	1 cut(s)	593
Bme1390I	CCNGG	1 cut(s)	317
BmrFI	CCNGG	1 cut(s)	317
BmrI	ACTGGG	3 cut(s)	344, 543, 721
BmsI	GCATC	2 cut(s)	208, 265
BmuI	ACTGGG	3 cut(s)	344, 543, 721
BoxI	GACNNNNGTC	1 cut(s)	536
Bpu10I	CCTNAGC	1 cut(s)	380
BpuEI	CTTGAG	1 cut(s)	722
BsaJI	CCNNGG	3 cut(s)	279, 295, 597
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bse1I	ACTGG	4 cut(s)	242, 339, 538, 716
Bse3DI	GCAATG	1 cut(s)	235
BseBI	CCWGG	1 cut(s)	317
BseDI	CCNNGG	3 cut(s)	279, 295, 597
BseGI	GGATG	4 cut(s)	280, 442, 583, 603
BseMI	GCAATG	1 cut(s)	235
BseMII	CTCAG	4 cut(s)	45, 153, 371, 579
BseNI	ACTGG	4 cut(s)	242, 339, 538, 716
BseXI	GCAGC	3 cut(s)	53, 113, 219
BsgI	GTGCAG	3 cut(s)	132, 346, 663
Bsh1285I	CGRYCG	1 cut(s)	625
BshFI	GGCC	2 cut(s)	561, 582
BsiEI	CGRYCG	1 cut(s)	625
BsiHKAI	GWGCWC	1 cut(s)	334
BsmAI	GTCTC	1 cut(s)	42
BsmI	GAATGC	1 cut(s)	573
BsnI	GGCC	2 cut(s)	561, 582
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp1407I	TGTACA	1 cut(s)	135
Bsp143I	GATC	5 cut(s)	198, 240, 459, 513, 720
Bsp19I	CCATGG	1 cut(s)	279
BspACI	CCGC	2 cut(s)	78, 625
BspANI	GGCC	2 cut(s)	561, 582
BspCNI	CTCAG	4 cut(s)	46, 154, 372, 580
BspMI	ACCTGC	1 cut(s)	457
BspPI	GGATC	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	235
BsrGI	TGTACA	1 cut(s)	135
BsrI	ACTGG	4 cut(s)	242, 339, 538, 716
BssECI	CCNNGG	3 cut(s)	279, 295, 597
BssMI	GATC	5 cut(s)	198, 240, 459, 513, 720
BssT1I	CCWWGG	2 cut(s)	279, 597
Bst2UI	CCWGG	1 cut(s)	317
BstAPI	GCANNNNNTGC	1 cut(s)	677
BstAUI	TGTACA	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	4 cut(s)	54, 162, 380, 588
BstDSI	CCRYGG	1 cut(s)	279
BstEII	GGTNACC	1 cut(s)	311
BstF5I	GGATG	4 cut(s)	280, 442, 583, 603
BstHHI	GCGC	1 cut(s)	454
BstKTI	GATC	5 cut(s)	201, 243, 462, 516, 723
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	5 cut(s)	198, 240, 459, 513, 720
BstMCI	CGRYCG	1 cut(s)	625
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 110, 579, 668, 677
BstNI	CCWGG	1 cut(s)	317
BstPAI	GACNNNNGTC	1 cut(s)	536
BstPI	GGTNACC	1 cut(s)	311
BstSCI	CCNGG	1 cut(s)	315
BstV1I	GCAGC	3 cut(s)	53, 113, 219
BstX2I	RGATCY	1 cut(s)	720
BstXI	CCANNNNNNTGG	1 cut(s)	569
BstYI	RGATCY	1 cut(s)	720
BsuI	GTATCC	1 cut(s)	512
BsuRI	GGCC	2 cut(s)	561, 582
BtgI	CCRYGG	1 cut(s)	279
BtsCI	GGATG	4 cut(s)	280, 442, 583, 603
BtsI	GCAGTG	1 cut(s)	680
BtsIMutI	CAGTG	4 cut(s)	208, 235, 332, 680
BveI	ACCTGC	1 cut(s)	457
Cac8I	GCNNGC	1 cut(s)	39
CfoI	GCGC	1 cut(s)	454
CsiI	ACCWGGT	1 cut(s)	315
Csp6I	GTAC	2 cut(s)	136, 592
CviAII	CATG	1 cut(s)	280
CviQI	GTAC	2 cut(s)	136, 592
DdeI	CTNAG	4 cut(s)	54, 162, 380, 588
DpnI	GATC	5 cut(s)	200, 242, 461, 515, 722
DpnII	GATC	5 cut(s)	198, 240, 459, 513, 720
Eco130I	CCWWGG	2 cut(s)	279, 597
Eco57I	CTGAAG	1 cut(s)	528
Eco91I	GGTNACC	1 cut(s)	311
EcoO65I	GGTNACC	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	315
EcoT14I	CCWWGG	2 cut(s)	279, 597
ErhI	CCWWGG	2 cut(s)	279, 597
FaeI	CATG	1 cut(s)	283
FatI	CATG	1 cut(s)	279
FbaI	TGATCA	1 cut(s)	198
Fnu4HI	GCNGC	4 cut(s)	42, 79, 102, 208
FokI	GGATG	4 cut(s)	287, 449, 570, 590
Fsp4HI	GCNGC	4 cut(s)	42, 79, 102, 208
FspBI	CTAG	1 cut(s)	21
GlaI	GCGC	1 cut(s)	453
GluI	GCNGC	4 cut(s)	42, 79, 102, 208
HaeIII	GGCC	2 cut(s)	561, 582
HhaI	GCGC	1 cut(s)	454
Hin1II	CATG	1 cut(s)	283
Hin6I	GCGC	1 cut(s)	452
HinP1I	GCGC	1 cut(s)	452
HinfI	GANTC	1 cut(s)	50
HphI	GGTGA	3 cut(s)	305, 402, 541
Hpy166II	GTNNAC	1 cut(s)	549
Hpy188I	TCNGA	2 cut(s)	55, 518
Hpy188III	TCNNGA	3 cut(s)	161, 476, 587
Hpy8I	GTNNAC	1 cut(s)	549
Hpy99I	CGWCG	1 cut(s)	431
HpyAV	CCTTC	4 cut(s)	110, 346, 394, 638
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	9 cut(s)	29, 101, 113, 265, 327, 645, 680, 685, 726
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 110, 579, 668, 677
HpyF3I	CTNAG	4 cut(s)	54, 162, 380, 588
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	1 cut(s)	283
HspAI	GCGC	1 cut(s)	452
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	5 cut(s)	198, 240, 459, 513, 720
Lsp1109I	GCAGC	3 cut(s)	53, 113, 219
LweI	GCATC	2 cut(s)	208, 265
MabI	ACCWGGT	1 cut(s)	315
MaeI	CTAG	1 cut(s)	21
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	2 cut(s)	311, 408
MalI	GATC	5 cut(s)	200, 242, 461, 515, 722
MboI	GATC	5 cut(s)	198, 240, 459, 513, 720
MboII	GAAGA	6 cut(s)	76, 298, 403, 415, 718, 730
MfeI	CAATTG	1 cut(s)	686
MflI	RGATCY	1 cut(s)	720
MhlI	GDGCHC	1 cut(s)	334
MluCI	AATT	1 cut(s)	686
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	1 cut(s)	549
MnlI	CCTC	7 cut(s)	117, 142, 305, 332, 375, 475, 551
MslI	CAYNNNNRTG	1 cut(s)	477
MspR9I	CCNGG	1 cut(s)	317
MunI	CAATTG	1 cut(s)	686
Mva1269I	GAATGC	1 cut(s)	573
MvaI	CCWGG	1 cut(s)	317
MwoI	GCNNNNNNNGC	5 cut(s)	26, 110, 579, 668, 677
NcoI	CCATGG	1 cut(s)	279
NdeII	GATC	5 cut(s)	198, 240, 459, 513, 720
NlaIII	CATG	1 cut(s)	283
NmeAIII	GCCGAG	1 cut(s)	276
NmuCI	GTSAC	2 cut(s)	311, 408
PaqCI	CACCTGC	1 cut(s)	457
PctI	GAATGC	1 cut(s)	573
PkrI	GCNGC	4 cut(s)	43, 80, 103, 209
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
PshAI	GACNNNNGTC	1 cut(s)	536
PsiI	TTATAA	1 cut(s)	612
Psp6I	CCWGG	1 cut(s)	315
PspEI	GGTNACC	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	315
PsuI	RGATCY	1 cut(s)	720
RsaI	GTAC	2 cut(s)	137, 593
RsaNI	GTAC	2 cut(s)	136, 592
RseI	CAYNNNNRTG	1 cut(s)	477
SatI	GCNGC	4 cut(s)	42, 79, 102, 208
Sau3AI	GATC	5 cut(s)	198, 240, 459, 513, 720
ScaI	AGTACT	1 cut(s)	593
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	1 cut(s)	317
SduI	GDGCHC	1 cut(s)	334
SexAI	ACCWGGT	1 cut(s)	315
SfaNI	GCATC	2 cut(s)	208, 265
SmiMI	CAYNNNNRTG	1 cut(s)	477
SmlI	CTYRAG	1 cut(s)	737
SmoI	CTYRAG	1 cut(s)	737
Sse9I	AATT	1 cut(s)	686
SsiI	CCGC	2 cut(s)	78, 625
SspMI	CTAG	1 cut(s)	21
StyD4I	CCNGG	1 cut(s)	315
StyI	CCWWGG	2 cut(s)	279, 597
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	5 cut(s)	426, 458, 465, 540, 621
TasI	AATT	1 cut(s)	686
TatI	WGTACW	2 cut(s)	135, 591
TauI	GCSGC	1 cut(s)	81
TscAI	CASTG	4 cut(s)	208, 242, 339, 687
TseFI	GTSAC	2 cut(s)	311, 408
TseI	GCWGC	3 cut(s)	41, 101, 207
Tsp45I	GTSAC	2 cut(s)	311, 408
TspDTI	ATGAA	2 cut(s)	17, 453
TspGWI	ACGGA	1 cut(s)	444
TspRI	CASTG	4 cut(s)	208, 242, 339, 687
XspI	CTAG	1 cut(s)	21
ZrmI	AGTACT	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.