Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0012238

Physical Location & Seq

Genomic Coordinates Reverse (-)

11543587 .. 11545007

Gene Structure 1421 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g12720.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGAAGGTTGAAAGAGAAAGAAGATACGCACTTCTGCTTGCAGCAAAGGACTCTGAGTATGTGAAGAAAGTGTACGGTGGTTACTTCAATGTGTTTGTGGCAACTTTTGGGGAAGAAGGAGAGAGGTGGGACTTGTTCAGGGTAGTCGACGGTGAGTTTCCGGAAACGAGTGAGCTTCAAGAGTATGATGGGTTTGTGGTCAGTGGAAGCCCTTATGATGCTTATGGCAATGACCACTGGATTATAAAACTGTGCTTTCTCTTGCAAACTCTTGATGCCATGGAGAAGAAAGTCCTCGGAATTTGCTTCGGTCATCAGGTGTTGTGTAGAGCACTAGGAGGAAGAGTTGGGAAAGCTTGTACTGGGTGGGATATTGGACTGAGAAACGTGAAGATTGTGAAGGACATGAGTCCGTTTAGCTTCCTTGATGGCTTGGATGAAATCCCATCTGCCCTTTCGATCATCGAGTGTCACCAGGACGAGGTTTGGGAAGTTCCTTTGGGTGCTCAAGTTATCGCCTTTTCAGACAAAACTGGAGTAGAGATGTTCACCATTGGAGGTCATGTTCTGGGCATCCAAGGCCATCCAGAGTATACTAATGATATCCTTTCCAATCTGATCGATCGCCTTCTCAATAACAACTCCATTGAGATAGGTTTTGCTGAAAATGCAAGGTTCGGACTGCAAAAAGCTGAGCCAGATAGGAAGTGCTGGGAGAAAATCTGCAGGAATTTTCTTAAAGGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006508 GO:0006725 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008242 GO:0009058 GO:0009403 GO:0009404 GO:0009700 GO:0009987 GO:0010120 GO:0016143 GO:0016787 GO:0018130 GO:0019438 GO:0019538 GO:0019748 GO:0019757 GO:0019760 GO:0034641 GO:0034722 GO:0042430 GO:0042435 GO:0043170 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046217 GO:0046483 GO:0052314 GO:0052315 GO:0052317 GO:0070011 GO:0071704 GO:0140096 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATase

Protein Analysis

250

Amino Acids

28.11

Weight (kDa)

5.15

Isoelectric Point (pI)

40.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase	PF00117	52 - 200	3.1e-14	Glutamine amidotransferase class-I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23970 AT4G30550
fragaria_vesca	FvH4_7g12720 FvH4_7g12720
malus_domestica	MD13G1275500.v1.1 MD16G1259000.v1.1
prunus_persica	Prupe.1G101400_v2.0.a1
pyrus_communis	pycom16g22650
rosa_chinensis	RchiOBHm_Chr4g0405351
rosa_laevigata	RLG00000008849
rosa_multiflora	Rmu_sc0000161.1_g000077
rosa_roxburghii	Rroxscaffold_5G00349780
rosa_rugosa	Rorug04G0057600
rosa_samantha	Rh4AG131100 Rh4BG125700 Rh4CG137800 Rh4CG138000 Rh4DG125100
rosa_wichuraiana	Rw4G010620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	245
AccI	GTMKAC	2 cut(s)	147, 593
AccIII	TCCGGA	1 cut(s)	160
AcsI	RAATTY	2 cut(s)	300, 730
AfaI	GTAC	2 cut(s)	74, 361
AfiI	CCNNNNNNNGG	1 cut(s)	481
AgsI	TTSAA	3 cut(s)	11, 88, 179
AjnI	CCWGG	1 cut(s)	474
AloI	GAACNNNNNNTCC	2 cut(s)	549, 581
AluBI	AGCT	4 cut(s)	175, 356, 420, 692
AluI	AGCT	4 cut(s)	175, 356, 420, 692
Alw21I	GWGCWC	2 cut(s)	334, 508
Aor13HI	TCCGGA	1 cut(s)	160
AoxI	GGCC	1 cut(s)	580
ApeKI	GCWGC	1 cut(s)	41
ApoI	RAATTY	2 cut(s)	300, 730
AsuHPI	GGTGA	3 cut(s)	164, 464, 541
BarI	GAAGNNNNNNTAC	2 cut(s)	56, 88
Bbv12I	GWGCWC	2 cut(s)	334, 508
BbvI	GCAGC	1 cut(s)	53
BccI	CCATC	4 cut(s)	182, 422, 454, 591
BciT130I	CCWGG	1 cut(s)	476
BfaI	CTAG	1 cut(s)	335
BfmI	CTRYAG	1 cut(s)	724
BisI	GCNGC	1 cut(s)	42
BlpI	GCTNAGC	1 cut(s)	693
BlsI	GCNGC	1 cut(s)	43
Bme1390I	CCNGG	1 cut(s)	476
BmrFI	CCNGG	1 cut(s)	476
BmrI	ACTGGG	1 cut(s)	372
BmsI	GCATC	3 cut(s)	208, 265, 582
BmuI	ACTGGG	1 cut(s)	372
BoxI	GACNNNNGTC	1 cut(s)	408
BpmI	CTGGAG	1 cut(s)	555
Bpu1102I	GCTNAGC	1 cut(s)	693
BpuEI	CTTGAG	1 cut(s)	492
Bsa29I	ATCGAT	1 cut(s)	621
BsaJI	CCNNGG	3 cut(s)	279, 295, 577
BsaWI	WCCGGW	1 cut(s)	160
BsaXI	ACNNNNNCTCC	4 cut(s)	330, 360, 549, 579
Bsc4I	CCNNNNNNNGG	1 cut(s)	481
Bse1I	ACTGG	3 cut(s)	242, 367, 538
Bse3DI	GCAATG	1 cut(s)	235
BseAI	TCCGGA	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	476
BseCI	ATCGAT	1 cut(s)	621
BseDI	CCNNGG	3 cut(s)	279, 295, 577
BseGI	GGATG	3 cut(s)	442, 573, 583
BseLI	CCNNNNNNNGG	1 cut(s)	481
BseMI	GCAATG	1 cut(s)	235
BseMII	CTCAG	3 cut(s)	45, 371, 684
BseNI	ACTGG	3 cut(s)	242, 367, 538
BseXI	GCAGC	1 cut(s)	53
BseYI	CCCAGC	1 cut(s)	711
Bsh1285I	CGRYCG	1 cut(s)	625
BshFI	GGCC	1 cut(s)	582
BshVI	ATCGAT	1 cut(s)	621
BsiEI	CGRYCG	1 cut(s)	625
BsiHKAI	GWGCWC	2 cut(s)	334, 508
BsiSI	CCGG	1 cut(s)	161
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	481
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	582
Bsp1286I	GDGCHC	2 cut(s)	334, 508
Bsp13I	TCCGGA	1 cut(s)	160
Bsp143I	GATC	3 cut(s)	459, 618, 622
Bsp1720I	GCTNAGC	1 cut(s)	693
Bsp19I	CCATGG	1 cut(s)	279
BspANI	GGCC	1 cut(s)	582
BspCNI	CTCAG	3 cut(s)	46, 372, 685
BspDI	ATCGAT	1 cut(s)	621
BspEI	TCCGGA	1 cut(s)	160
BspMAI	CTGCAG	1 cut(s)	728
BsrDI	GCAATG	1 cut(s)	235
BsrI	ACTGG	3 cut(s)	242, 367, 538
BssECI	CCNNGG	3 cut(s)	279, 295, 577
BssMI	GATC	3 cut(s)	459, 618, 622
BssNAI	GTATAC	1 cut(s)	594
BssT1I	CCWWGG	2 cut(s)	279, 577
Bst1107I	GTATAC	1 cut(s)	594
Bst2UI	CCWGG	1 cut(s)	476
Bst4CI	ACNGT	3 cut(s)	77, 152, 252
Bst6I	CTCTTC	1 cut(s)	337
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	3 cut(s)	54, 380, 693
BstDSI	CCRYGG	1 cut(s)	279
BstF5I	GGATG	3 cut(s)	442, 573, 583
BstKTI	GATC	3 cut(s)	462, 621, 625
BstMBI	GATC	3 cut(s)	459, 618, 622
BstMCI	CGRYCG	1 cut(s)	625
BstMWI	GCNNNNNNNGC	2 cut(s)	579, 668
BstNI	CCWGG	1 cut(s)	476
BstPAI	GACNNNNGTC	1 cut(s)	408
BstSCI	CCNGG	1 cut(s)	474
BstSFI	CTRYAG	1 cut(s)	724
BstV1I	GCAGC	1 cut(s)	53
BstZ17I	GTATAC	1 cut(s)	594
Bsu15I	ATCGAT	1 cut(s)	621
BsuRI	GGCC	1 cut(s)	582
BsuTUI	ATCGAT	1 cut(s)	621
BtgI	CCRYGG	1 cut(s)	279
BtsCI	GGATG	3 cut(s)	442, 573, 583
BtsIMutI	CAGTG	2 cut(s)	208, 235
Cac8I	GCNNGC	1 cut(s)	39
ClaI	ATCGAT	1 cut(s)	621
Csp6I	GTAC	2 cut(s)	73, 360
CviAII	CATG	3 cut(s)	280, 406, 563
CviJI	RGCY	8 cut(s)	175, 210, 356, 420, 432, 582, 692, 697
CviKI_1	RGCY	8 cut(s)	175, 210, 356, 420, 432, 582, 692, 697
CviQI	GTAC	2 cut(s)	73, 360
DdeI	CTNAG	3 cut(s)	54, 380, 693
DpnI	GATC	3 cut(s)	461, 620, 624
DpnII	GATC	3 cut(s)	459, 618, 622
Eam1104I	CTCTTC	1 cut(s)	337
EarI	CTCTTC	1 cut(s)	337
Eco130I	CCWWGG	2 cut(s)	279, 577
Eco32I	GATATC	1 cut(s)	604
EcoRII	CCWGG	1 cut(s)	474
EcoRV	GATATC	1 cut(s)	604
EcoT14I	CCWWGG	2 cut(s)	279, 577
ErhI	CCWWGG	2 cut(s)	279, 577
FaeI	CATG	3 cut(s)	283, 409, 566
FaiI	YATR	9 cut(s)	60, 186, 216, 225, 245, 281, 407, 564, 594
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	3 cut(s)	279, 405, 562
FblI	GTMKAC	2 cut(s)	147, 593
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	3 cut(s)	449, 560, 570
Fsp4HI	GCNGC	1 cut(s)	42
FspBI	CTAG	1 cut(s)	335
GluI	GCNGC	1 cut(s)	42
GsaI	CCCAGC	1 cut(s)	715
GsuI	CTGGAG	1 cut(s)	555
HaeIII	GGCC	1 cut(s)	582
HapII	CCGG	1 cut(s)	161
Hin1II	CATG	3 cut(s)	283, 409, 566
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	354
HinfI	GANTC	2 cut(s)	50, 409
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	3 cut(s)	164, 464, 541
Hpy166II	GTNNAC	4 cut(s)	73, 148, 549, 594
Hpy188I	TCNGA	5 cut(s)	55, 299, 526, 618, 680
Hpy188III	TCNNGA	4 cut(s)	161, 179, 272, 587
Hpy8I	GTNNAC	4 cut(s)	73, 148, 549, 594
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	3 cut(s)	110, 394, 638
HpyCH4III	ACNGT	3 cut(s)	77, 152, 252
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	5 cut(s)	41, 265, 671, 685, 726
HpyF10VI	GCNNNNNNNGC	2 cut(s)	579, 668
HpyF3I	CTNAG	3 cut(s)	54, 380, 693
HpySE526I	ACGT	1 cut(s)	387
Hsp92II	CATG	3 cut(s)	283, 409, 566
Kpn2I	TCCGGA	1 cut(s)	160
Kzo9I	GATC	3 cut(s)	459, 618, 622
Lsp1109I	GCAGC	1 cut(s)	53
LweI	GCATC	3 cut(s)	208, 265, 582
MaeI	CTAG	1 cut(s)	335
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	2 cut(s)	80, 470
MalI	GATC	3 cut(s)	461, 620, 624
MboI	GATC	3 cut(s)	459, 618, 622
MboII	GAAGA	6 cut(s)	33, 76, 125, 298, 354, 403
MhlI	GDGCHC	2 cut(s)	334, 508
MluCI	AATT	2 cut(s)	300, 730
MlyI	GAGTC	2 cut(s)	44, 418
MnlI	CCTC	5 cut(s)	117, 305, 332, 475, 551
MroI	TCCGGA	1 cut(s)	160
MseI	TTAA	1 cut(s)	738
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	476
MvaI	CCWGG	1 cut(s)	476
MwoI	GCNNNNNNNGC	2 cut(s)	579, 668
NcoI	CCATGG	1 cut(s)	279
NdeII	GATC	3 cut(s)	459, 618, 622
NlaIII	CATG	3 cut(s)	283, 409, 566
NmuCI	GTSAC	1 cut(s)	470
PkrI	GCNGC	1 cut(s)	43
Ple19I	CGATCG	1 cut(s)	625
PleI	GAGTC	2 cut(s)	44, 417
PpsI	GAGTC	2 cut(s)	44, 417
PshAI	GACNNNNGTC	1 cut(s)	408
PsiI	TTATAA	1 cut(s)	245
Psp6I	CCWGG	1 cut(s)	474
PspFI	CCCAGC	1 cut(s)	711
PspGI	CCWGG	1 cut(s)	474
PstI	CTGCAG	1 cut(s)	728
PvuI	CGATCG	1 cut(s)	625
RsaI	GTAC	2 cut(s)	74, 361
RsaNI	GTAC	2 cut(s)	73, 360
SalI	GTCGAC	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	738
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	3 cut(s)	459, 618, 622
SchI	GAGTC	2 cut(s)	44, 418
ScrFI	CCNGG	1 cut(s)	476
SduI	GDGCHC	2 cut(s)	334, 508
SfaNI	GCATC	3 cut(s)	208, 265, 582
SfcI	CTRYAG	1 cut(s)	724
SmlI	CTYRAG	1 cut(s)	507
SmoI	CTYRAG	1 cut(s)	507
Sse9I	AATT	2 cut(s)	300, 730
SspMI	CTAG	1 cut(s)	335
StyD4I	CCNGG	1 cut(s)	474
StyI	CCWWGG	2 cut(s)	279, 577
TaaI	ACNGT	3 cut(s)	77, 152, 252
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	4 cut(s)	147, 458, 465, 621
TaqII	GACCGA	1 cut(s)	299
TasI	AATT	2 cut(s)	300, 730
TatI	WGTACW	1 cut(s)	359
Tru1I	TTAA	1 cut(s)	738
Tru9I	TTAA	1 cut(s)	738
TscAI	CASTG	2 cut(s)	208, 242
TseFI	GTSAC	1 cut(s)	470
TseI	GCWGC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	470
TspDTI	ATGAA	2 cut(s)	17, 453
TspGWI	ACGGA	1 cut(s)	402
TspRI	CASTG	2 cut(s)	208, 242
XapI	RAATTY	2 cut(s)	300, 730
XmiI	GTMKAC	2 cut(s)	147, 593
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.