Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0012238

Physical Location & Seq

Genomic Coordinates Reverse (-)

22901763 .. 22902694

Gene Structure 932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g22650.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGAAGGTTGAGAAGGAGAGTAGATCTGGATCATATGCACTTCTGCTAGCAGCAAGGGACTCAGAGTATGTGAAGAAAGTGTACGGTGGGTATGTCAATGTGTTTGTTGCAGCGTTTGGGGAAGAAGGAGAGAGGTGGGACTTGTACAGGGTTGTAGATGGAGAGTTTCCTGACATGGATGACCTTCAAAGCTATGATGGCTTCGTCATCAGTGGCAGCCCTTATGATGCTTATGGCAATGACTACTGGATCATCAAACTATGCTTTCTCTTGCAAACTTTGGATGCCATGGAGAAGAAAGTCCTCGGAATTTGCTTTGGTCATCAGGTGTTGTGCAGAGCACTAGGAGGAAAGGTTGGGAAAGCTTATACAGGGTGGGATATTGGGCTGAGGAAAGTGAAGCTAGTGAAGGAATTGGCTCCATTCGGCTTCCTGAATGACTTGGATGACGTTCCCCTTCCGCTTGCCCTTTCCATTATTGAGTGCCATCAAGATGAGGTTTGGGAAGTTCCTTTGGGTGCAGAGGTGATCGGGTACTCGGACAAAACAGGTGTGGAGATGTTCACCATTGGAAGCCATGTTCTGGGCATTCAAGGTCATCCTGAATACAGTAAGGACATTCTTTCAAATCTCATTGATCGCCTTTTCAACAGCAACTGCATAGAACTAGGTTTTGCAGAAAACGCAAGGTCTGCACTGCAATTAGCTGAACCAGATAGGAAGTGCTGGGAGAAGTTCTGCAAGACATTTCTCAAGGGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006508 GO:0006725 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008242 GO:0009058 GO:0009403 GO:0009404 GO:0009700 GO:0009987 GO:0010120 GO:0016143 GO:0016787 GO:0018130 GO:0019438 GO:0019538 GO:0019748 GO:0019757 GO:0019760 GO:0034641 GO:0034722 GO:0042430 GO:0042435 GO:0043170 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046217 GO:0046483 GO:0052314 GO:0052315 GO:0052317 GO:0070011 GO:0071704 GO:0140096 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATase

Protein Analysis

255

Amino Acids

28.46

Weight (kDa)

4.98

Isoelectric Point (pI)

34.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23970 AT4G30550
fragaria_vesca	FvH4_7g12720 FvH4_7g12720
malus_domestica	MD13G1275500.v1.1 MD16G1259000.v1.1
prunus_persica	Prupe.1G101400_v2.0.a1
pyrus_communis	pycom16g22650
rosa_chinensis	RchiOBHm_Chr4g0405351
rosa_laevigata	RLG00000008849
rosa_multiflora	Rmu_sc0000161.1_g000077
rosa_roxburghii	Rroxscaffold_5G00349780
rosa_rugosa	Rorug04G0057600
rosa_samantha	Rh4AG131100 Rh4BG125700 Rh4CG137800 Rh4CG138000 Rh4DG125100
rosa_wichuraiana	Rw4G010620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	583
AciI	CCGC	1 cut(s)	461
AclWI	GGATC	2 cut(s)	37, 257
AcsI	RAATTY	1 cut(s)	309
AfaI	GTAC	3 cut(s)	83, 146, 536
AfiI	CCNNNNNNNGG	1 cut(s)	583
AgsI	TTSAA	4 cut(s)	188, 593, 627, 649
AloI	GAACNNNNNNTCC	2 cut(s)	564, 596
AluBI	AGCT	4 cut(s)	192, 365, 403, 707
AluI	AGCT	4 cut(s)	192, 365, 403, 707
Alw21I	GWGCWC	1 cut(s)	343
AlwI	GGATC	2 cut(s)	37, 257
AlwNI	CAGNNNCTG	1 cut(s)	657
ApeKI	GCWGC	3 cut(s)	50, 110, 216
ApoI	RAATTY	1 cut(s)	309
AsuHPI	GGTGA	2 cut(s)	538, 556
AsuNHI	GCTAGC	1 cut(s)	46
BarI	GAAGNNNNNNTAC	2 cut(s)	65, 97
Bbv12I	GWGCWC	1 cut(s)	343
BbvCI	CCTCAGC	1 cut(s)	389
BbvI	GCAGC	3 cut(s)	62, 122, 228
BccI	CCATC	3 cut(s)	152, 191, 495
BfaI	CTAG	4 cut(s)	47, 344, 404, 668
BglII	AGATCT	1 cut(s)	23
BisI	GCNGC	3 cut(s)	51, 111, 217
BlsI	GCNGC	3 cut(s)	52, 112, 218
BmiI	GGNNCC	1 cut(s)	420
BmsI	GCATC	2 cut(s)	217, 274
BmtI	GCTAGC	1 cut(s)	50
Bpu10I	CCTNAGC	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	737
BsaBI	GATNNNNATC	1 cut(s)	28
BsaJI	CCNNGG	2 cut(s)	288, 304
BsaXI	ACNNNNNCTCC	2 cut(s)	339, 369
Bsc4I	CCNNNNNNNGG	1 cut(s)	583
Bse1I	ACTGG	1 cut(s)	251
Bse3DI	GCAATG	1 cut(s)	244
Bse8I	GATNNNNATC	1 cut(s)	28
BseDI	CCNNGG	2 cut(s)	288, 304
BseGI	GGATG	4 cut(s)	184, 289, 451, 598
BseJI	GATNNNNATC	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	583
BseMI	GCAATG	1 cut(s)	244
BseMII	CTCAG	2 cut(s)	75, 380
BseNI	ACTGG	1 cut(s)	251
BseXI	GCAGC	3 cut(s)	62, 122, 228
BseYI	CCCAGC	1 cut(s)	726
BsgI	GTGCAG	3 cut(s)	355, 540, 678
BsiHKAI	GWGCWC	1 cut(s)	343
BslFI	GGGAC	2 cut(s)	71, 152
BslI	CCNNNNNNNGG	1 cut(s)	583
BsmFI	GGGAC	2 cut(s)	71, 152
BsmI	GAATGC	1 cut(s)	588
Bsp1286I	GDGCHC	1 cut(s)	343
Bsp1407I	TGTACA	1 cut(s)	144
Bsp143I	GATC	5 cut(s)	23, 29, 249, 528, 637
Bsp19I	CCATGG	1 cut(s)	288
BspACI	CCGC	1 cut(s)	461
BspCNI	CTCAG	2 cut(s)	74, 381
BspLI	GGNNCC	1 cut(s)	420
BspOI	GCTAGC	1 cut(s)	50
BspPI	GGATC	2 cut(s)	37, 257
BsrDI	GCAATG	1 cut(s)	244
BsrGI	TGTACA	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	251
BssECI	CCNNGG	2 cut(s)	288, 304
BssMI	GATC	5 cut(s)	23, 29, 249, 528, 637
BssT1I	CCWWGG	1 cut(s)	288
Bst4CI	ACNGT	2 cut(s)	86, 611
BstAPI	GCANNNNNTGC	1 cut(s)	692
BstAUI	TGTACA	1 cut(s)	144
BstC8I	GCNNGC	2 cut(s)	48, 465
BstDEI	CTNAG	2 cut(s)	61, 389
BstDSI	CCRYGG	1 cut(s)	288
BstF5I	GGATG	4 cut(s)	184, 289, 451, 598
BstKTI	GATC	5 cut(s)	26, 32, 252, 531, 640
BstMBI	GATC	5 cut(s)	23, 29, 249, 528, 637
BstMWI	GCNNNNNNNGC	3 cut(s)	198, 683, 692
BstV1I	GCAGC	3 cut(s)	62, 122, 228
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
BtgI	CCRYGG	1 cut(s)	288
BtsCI	GGATG	4 cut(s)	184, 289, 451, 598
BtsI	GCAGTG	1 cut(s)	695
BtsIMutI	CAGTG	2 cut(s)	217, 695
Cac8I	GCNNGC	2 cut(s)	48, 465
CaiI	CAGNNNCTG	1 cut(s)	657
Csp6I	GTAC	3 cut(s)	82, 145, 535
CviAII	CATG	3 cut(s)	175, 289, 578
CviQI	GTAC	3 cut(s)	82, 145, 535
DdeI	CTNAG	2 cut(s)	61, 389
DpnI	GATC	5 cut(s)	25, 31, 251, 530, 639
DpnII	GATC	5 cut(s)	23, 29, 249, 528, 637
Eco130I	CCWWGG	1 cut(s)	288
EcoT14I	CCWWGG	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	288
FaeI	CATG	3 cut(s)	178, 292, 581
FaqI	GGGAC	2 cut(s)	71, 152
FatI	CATG	3 cut(s)	174, 288, 577
FauNDI	CATATG	1 cut(s)	34
Fnu4HI	GCNGC	3 cut(s)	51, 111, 217
FokI	GGATG	4 cut(s)	191, 296, 458, 585
Fsp4HI	GCNGC	3 cut(s)	51, 111, 217
FspBI	CTAG	4 cut(s)	47, 344, 404, 668
GluI	GCNGC	3 cut(s)	51, 111, 217
GsaI	CCCAGC	1 cut(s)	730
Hin1II	CATG	3 cut(s)	178, 292, 581
HindIII	AAGCTT	1 cut(s)	363
HinfI	GANTC	1 cut(s)	59
HphI	GGTGA	2 cut(s)	538, 556
Hpy166II	GTNNAC	2 cut(s)	82, 564
Hpy188I	TCNGA	3 cut(s)	64, 308, 541
Hpy188III	TCNNGA	5 cut(s)	27, 170, 433, 491, 602
Hpy8I	GTNNAC	2 cut(s)	82, 564
HpyAV	CCTTC	5 cut(s)	7, 119, 194, 403, 467
HpyCH4III	ACNGT	2 cut(s)	86, 611
HpyCH4IV	ACGT	1 cut(s)	450
HpyF10VI	GCNNNNNNNGC	3 cut(s)	198, 683, 692
HpyF3I	CTNAG	2 cut(s)	61, 389
HpySE526I	ACGT	1 cut(s)	450
Hsp92II	CATG	3 cut(s)	178, 292, 581
Kzo9I	GATC	5 cut(s)	23, 29, 249, 528, 637
LmnI	GCTCC	1 cut(s)	424
Lsp1109I	GCAGC	3 cut(s)	62, 122, 228
LweI	GCATC	2 cut(s)	217, 274
MaeI	CTAG	4 cut(s)	47, 344, 404, 668
MaeII	ACGT	1 cut(s)	450
MalI	GATC	5 cut(s)	25, 31, 251, 530, 639
MboI	GATC	5 cut(s)	23, 29, 249, 528, 637
MboII	GAAGA	3 cut(s)	85, 134, 307
MflI	RGATCY	1 cut(s)	23
MhlI	GDGCHC	1 cut(s)	343
MluCI	AATT	3 cut(s)	309, 413, 701
MlyI	GAGTC	1 cut(s)	53
MnlI	CCTC	6 cut(s)	126, 314, 341, 384, 490, 517
MslI	CAYNNNNRTG	1 cut(s)	492
Mva1269I	GAATGC	1 cut(s)	588
MwoI	GCNNNNNNNGC	3 cut(s)	198, 683, 692
NcoI	CCATGG	1 cut(s)	288
NdeI	CATATG	1 cut(s)	34
NdeII	GATC	5 cut(s)	23, 29, 249, 528, 637
NheI	GCTAGC	1 cut(s)	46
NlaIII	CATG	3 cut(s)	178, 292, 581
NlaIV	GGNNCC	1 cut(s)	420
PctI	GAATGC	1 cut(s)	588
PflMI	CCANNNNNTGG	1 cut(s)	583
PkrI	GCNGC	3 cut(s)	52, 112, 218
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PspFI	CCCAGC	1 cut(s)	726
PspN4I	GGNNCC	1 cut(s)	420
PstNI	CAGNNNCTG	1 cut(s)	657
PsuI	RGATCY	1 cut(s)	23
RsaI	GTAC	3 cut(s)	83, 146, 536
RsaNI	GTAC	3 cut(s)	82, 145, 535
RseI	CAYNNNNRTG	1 cut(s)	492
SatI	GCNGC	3 cut(s)	51, 111, 217
Sau3AI	GATC	5 cut(s)	23, 29, 249, 528, 637
SchI	GAGTC	1 cut(s)	53
SduI	GDGCHC	1 cut(s)	343
SfaNI	GCATC	2 cut(s)	217, 274
SmiMI	CAYNNNNRTG	1 cut(s)	492
SmlI	CTYRAG	1 cut(s)	752
SmoI	CTYRAG	1 cut(s)	752
Sse9I	AATT	3 cut(s)	309, 413, 701
SsiI	CCGC	1 cut(s)	461
SspMI	CTAG	4 cut(s)	47, 344, 404, 668
StyI	CCWWGG	1 cut(s)	288
TaaI	ACNGT	2 cut(s)	86, 611
TaiI	ACGT	1 cut(s)	453
TasI	AATT	3 cut(s)	309, 413, 701
TatI	WGTACW	1 cut(s)	144
TscAI	CASTG	2 cut(s)	217, 702
TseI	GCWGC	3 cut(s)	50, 110, 216
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	217, 702
Van91I	CCANNNNNTGG	1 cut(s)	583
XapI	RAATTY	1 cut(s)	309
XspI	CTAG	4 cut(s)	47, 344, 404, 668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.