Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0012238

Physical Location & Seq

Genomic Coordinates Forward (+)

37944141 .. 37945110

Gene Structure 970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1275500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAAGGCTGAGAAGGAGAGTAGATCTGGATCATATGCACTTCTGCTAGCAGCAAGGGACTCAGACTATGTGAAGAAAGTGTATGGTGGGTATTTCAATGTGTTTGTTGCAGCGTTTGGGGAAGAAGGAGAGAGGTGGGACTTGTACAGGGTTGTAGAGGGAGAGTTTCCAGGCATGGATGACCTTCAAAGCTATGATGGCTTCGTCGTCAGTGGCAGCCCGTATAATGCTTATGGCAATGACTACTGGATCATGAAACTCTGCTTTCTCTTGCAAACTTTGGATGCCATGGAGAAGAAAGTCCTCGGAATTTGCTTCGGTCATCAGGTGTTGTGCAGAGCACTTGGAGGAAAGGTTGGGAAAGCTTATACAGGGTGGGATATTGGGCTGAGGAAAGTGAAGATAGTGAAGGACTTGGCTCCATTCAGCATCCTTAATTACTTGGACGACATGCCGCCTGCGCTTTCCATCATTGAGTGCCACCAAGATGAGGTCTGGGAAGTTCCTTCAGGTGCGGAGGTGATTGCGTACTCGGACAAAACAGGTGTGGAGATGTTCACCATTGGAGGCCACGTTCTGGGCATTCAAGGTCATCCTGAGTACAGTAAGGACATTCTTTTAAATCTCATCGATCGCCTTTTCAACAGCAACTTCATAGAGAAAGGTTTTGCTGAAAACACAAGGTCTGCACTGCAATTAGTTGAACCAGATAGGAAGTGCTGGGAGAAGATCTGCAAGACTTTTCTCAAGGGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006508 GO:0006725 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008242 GO:0009058 GO:0009403 GO:0009404 GO:0009700 GO:0009987 GO:0010120 GO:0016143 GO:0016787 GO:0018130 GO:0019438 GO:0019538 GO:0019748 GO:0019757 GO:0019760 GO:0034641 GO:0034722 GO:0042430 GO:0042435 GO:0043170 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046217 GO:0046483 GO:0052314 GO:0052315 GO:0052317 GO:0070011 GO:0071704 GO:0140096 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATase

Protein Analysis

253

Amino Acids

28.36

Weight (kDa)

5.36

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase	PF00117	61 - 202	1.3e-14	Glutamine amidotransferase class-I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23970 AT4G30550
fragaria_vesca	FvH4_7g12720 FvH4_7g12720
malus_domestica	MD13G1275500.v1.1 MD16G1259000.v1.1
prunus_persica	Prupe.1G101400_v2.0.a1
pyrus_communis	pycom16g22650
rosa_chinensis	RchiOBHm_Chr4g0405351
rosa_laevigata	RLG00000008849
rosa_multiflora	Rmu_sc0000161.1_g000077
rosa_roxburghii	Rroxscaffold_5G00349780
rosa_rugosa	Rorug04G0057600
rosa_samantha	Rh4AG131100 Rh4BG125700 Rh4CG137800 Rh4CG138000 Rh4DG125100
rosa_wichuraiana	Rw4G010620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	577
AciI	CCGC	2 cut(s)	455, 515
AclWI	GGATC	2 cut(s)	37, 257
AcsI	RAATTY	1 cut(s)	309
AcuI	CTGAAG	1 cut(s)	492
AfaI	GTAC	3 cut(s)	146, 530, 602
AfiI	CCNNNNNNNGG	2 cut(s)	490, 577
AgsI	TTSAA	5 cut(s)	97, 188, 587, 643, 704
AjnI	CCWGG	1 cut(s)	169
AloI	GAACNNNNNNTCC	2 cut(s)	558, 590
AluBI	AGCT	2 cut(s)	192, 365
AluI	AGCT	2 cut(s)	192, 365
Alw21I	GWGCWC	1 cut(s)	343
AlwI	GGATC	2 cut(s)	37, 257
AoxI	GGCC	1 cut(s)	568
ApeKI	GCWGC	3 cut(s)	50, 110, 216
ApoI	RAATTY	1 cut(s)	309
AspLEI	GCGC	1 cut(s)	463
AsuHPI	GGTGA	2 cut(s)	532, 550
AsuNHI	GCTAGC	1 cut(s)	46
Bbv12I	GWGCWC	1 cut(s)	343
BbvCI	CCTCAGC	1 cut(s)	389
BbvI	GCAGC	3 cut(s)	62, 122, 228
BccI	CCATC	2 cut(s)	191, 476
BciT130I	CCWGG	1 cut(s)	171
BfaI	CTAG	1 cut(s)	47
BglII	AGATCT	2 cut(s)	23, 729
BisI	GCNGC	4 cut(s)	51, 111, 217, 455
BlsI	GCNGC	4 cut(s)	52, 112, 218, 456
Bme1390I	CCNGG	1 cut(s)	171
BmiI	GGNNCC	1 cut(s)	420
BmrFI	CCNGG	1 cut(s)	171
BmsI	GCATC	2 cut(s)	274, 438
BmtI	GCTAGC	1 cut(s)	50
Bpu10I	CCTNAGC	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	731
Bsa29I	ATCGAT	1 cut(s)	630
BsaBI	GATNNNNATC	1 cut(s)	28
BsaJI	CCNNGG	2 cut(s)	288, 304
BsaXI	ACNNNNNCTCC	4 cut(s)	339, 369, 558, 588
Bsc4I	CCNNNNNNNGG	2 cut(s)	490, 577
Bse1I	ACTGG	1 cut(s)	251
Bse3DI	GCAATG	1 cut(s)	244
Bse8I	GATNNNNATC	1 cut(s)	28
BseBI	CCWGG	1 cut(s)	171
BseCI	ATCGAT	1 cut(s)	630
BseDI	CCNNGG	2 cut(s)	288, 304
BseGI	GGATG	4 cut(s)	184, 289, 429, 592
BseJI	GATNNNNATC	1 cut(s)	28
BseLI	CCNNNNNNNGG	2 cut(s)	490, 577
BseMI	GCAATG	1 cut(s)	244
BseMII	CTCAG	3 cut(s)	75, 380, 588
BseNI	ACTGG	1 cut(s)	251
BseXI	GCAGC	3 cut(s)	62, 122, 228
BseYI	CCCAGC	1 cut(s)	720
BsgI	GTGCAG	2 cut(s)	355, 672
Bsh1285I	CGRYCG	1 cut(s)	634
BshFI	GGCC	1 cut(s)	570
BshVI	ATCGAT	1 cut(s)	630
BsiEI	CGRYCG	1 cut(s)	634
BsiHKAI	GWGCWC	1 cut(s)	343
BslFI	GGGAC	2 cut(s)	71, 152
BslI	CCNNNNNNNGG	2 cut(s)	490, 577
BsmFI	GGGAC	2 cut(s)	71, 152
BsmI	GAATGC	1 cut(s)	582
BsnI	GGCC	1 cut(s)	570
Bsp1286I	GDGCHC	1 cut(s)	343
Bsp1407I	TGTACA	1 cut(s)	144
Bsp143I	GATC	5 cut(s)	23, 29, 249, 631, 729
Bsp19I	CCATGG	1 cut(s)	288
BspACI	CCGC	2 cut(s)	455, 515
BspANI	GGCC	1 cut(s)	570
BspCNI	CTCAG	3 cut(s)	74, 381, 589
BspDI	ATCGAT	1 cut(s)	630
BspHI	TCATGA	1 cut(s)	252
BspLI	GGNNCC	1 cut(s)	420
BspOI	GCTAGC	1 cut(s)	50
BspPI	GGATC	2 cut(s)	37, 257
BsrDI	GCAATG	1 cut(s)	244
BsrGI	TGTACA	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	251
BssECI	CCNNGG	2 cut(s)	288, 304
BssMI	GATC	5 cut(s)	23, 29, 249, 631, 729
BssT1I	CCWWGG	1 cut(s)	288
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	1 cut(s)	605
BstAUI	TGTACA	1 cut(s)	144
BstC8I	GCNNGC	2 cut(s)	48, 459
BstDEI	CTNAG	4 cut(s)	9, 61, 389, 597
BstDSI	CCRYGG	1 cut(s)	288
BstF5I	GGATG	4 cut(s)	184, 289, 429, 592
BstHHI	GCGC	1 cut(s)	463
BstKTI	GATC	5 cut(s)	26, 32, 252, 634, 732
BstMBI	GATC	5 cut(s)	23, 29, 249, 631, 729
BstMCI	CGRYCG	1 cut(s)	634
BstMWI	GCNNNNNNNGC	2 cut(s)	198, 460
BstNI	CCWGG	1 cut(s)	171
BstNSI	RCATGY	1 cut(s)	454
BstSCI	CCNGG	1 cut(s)	169
BstV1I	GCAGC	3 cut(s)	62, 122, 228
BstX2I	RGATCY	2 cut(s)	23, 729
BstYI	RGATCY	2 cut(s)	23, 729
Bsu15I	ATCGAT	1 cut(s)	630
BsuRI	GGCC	1 cut(s)	570
BsuTUI	ATCGAT	1 cut(s)	630
BtgI	CCRYGG	1 cut(s)	288
BtsCI	GGATG	4 cut(s)	184, 289, 429, 592
BtsI	GCAGTG	1 cut(s)	689
BtsIMutI	CAGTG	2 cut(s)	217, 689
Cac8I	GCNNGC	2 cut(s)	48, 459
CciI	TCATGA	1 cut(s)	252
CfoI	GCGC	1 cut(s)	463
ClaI	ATCGAT	1 cut(s)	630
Csp6I	GTAC	3 cut(s)	145, 529, 601
CviAII	CATG	4 cut(s)	175, 253, 289, 451
CviJI	RGCY	8 cut(s)	8, 192, 201, 219, 365, 388, 419, 570
CviKI_1	RGCY	8 cut(s)	8, 192, 201, 219, 365, 388, 419, 570
CviQI	GTAC	3 cut(s)	145, 529, 601
DdeI	CTNAG	4 cut(s)	9, 61, 389, 597
DpnI	GATC	5 cut(s)	25, 31, 251, 633, 731
DpnII	GATC	5 cut(s)	23, 29, 249, 631, 729
DraI	TTTAAA	1 cut(s)	621
Eco130I	CCWWGG	1 cut(s)	288
Eco57I	CTGAAG	1 cut(s)	492
EcoRII	CCWGG	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	288
FaeI	CATG	4 cut(s)	178, 256, 292, 454
FaqI	GGGAC	2 cut(s)	71, 152
FatI	CATG	4 cut(s)	174, 252, 288, 450
FauNDI	CATATG	1 cut(s)	34
Fnu4HI	GCNGC	4 cut(s)	51, 111, 217, 455
FokI	GGATG	4 cut(s)	191, 296, 416, 579
Fsp4HI	GCNGC	4 cut(s)	51, 111, 217, 455
FspBI	CTAG	1 cut(s)	47
GlaI	GCGC	1 cut(s)	462
GluI	GCNGC	4 cut(s)	51, 111, 217, 455
GsaI	CCCAGC	1 cut(s)	724
HaeIII	GGCC	1 cut(s)	570
HhaI	GCGC	1 cut(s)	463
Hin1II	CATG	4 cut(s)	178, 256, 292, 454
Hin6I	GCGC	1 cut(s)	461
HinP1I	GCGC	1 cut(s)	461
HindIII	AAGCTT	1 cut(s)	363
HinfI	GANTC	1 cut(s)	59
HphI	GGTGA	2 cut(s)	532, 550
Hpy166II	GTNNAC	1 cut(s)	558
Hpy188I	TCNGA	3 cut(s)	64, 308, 535
Hpy188III	TCNNGA	3 cut(s)	27, 253, 596
Hpy8I	GTNNAC	1 cut(s)	558
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	5 cut(s)	7, 119, 194, 403, 516
HpyCH4III	ACNGT	1 cut(s)	605
HpyCH4IV	ACGT	1 cut(s)	573
HpyCH4V	TGCA	7 cut(s)	38, 110, 274, 336, 689, 694, 735
HpyF10VI	GCNNNNNNNGC	2 cut(s)	198, 460
HpyF3I	CTNAG	4 cut(s)	9, 61, 389, 597
HpySE526I	ACGT	1 cut(s)	573
Hsp92II	CATG	4 cut(s)	178, 256, 292, 454
HspAI	GCGC	1 cut(s)	461
Kzo9I	GATC	5 cut(s)	23, 29, 249, 631, 729
LmnI	GCTCC	1 cut(s)	424
Lsp1109I	GCAGC	3 cut(s)	62, 122, 228
LweI	GCATC	2 cut(s)	274, 438
MaeI	CTAG	1 cut(s)	47
MaeII	ACGT	1 cut(s)	573
MalI	GATC	5 cut(s)	25, 31, 251, 633, 731
MboI	GATC	5 cut(s)	23, 29, 249, 631, 729
MboII	GAAGA	5 cut(s)	85, 134, 307, 412, 739
MflI	RGATCY	2 cut(s)	23, 729
MhlI	GDGCHC	1 cut(s)	343
MluCI	AATT	3 cut(s)	309, 436, 695
MlyI	GAGTC	1 cut(s)	53
MnlI	CCTC	8 cut(s)	126, 151, 314, 341, 384, 484, 511, 560
MseI	TTAA	2 cut(s)	435, 620
MslI	CAYNNNNRTG	1 cut(s)	486
MspR9I	CCNGG	1 cut(s)	171
Mva1269I	GAATGC	1 cut(s)	582
MvaI	CCWGG	1 cut(s)	171
MwoI	GCNNNNNNNGC	2 cut(s)	198, 460
NcoI	CCATGG	1 cut(s)	288
NdeI	CATATG	1 cut(s)	34
NdeII	GATC	5 cut(s)	23, 29, 249, 631, 729
NheI	GCTAGC	1 cut(s)	46
NlaIII	CATG	4 cut(s)	178, 256, 292, 454
NlaIV	GGNNCC	1 cut(s)	420
NspI	RCATGY	1 cut(s)	454
PagI	TCATGA	1 cut(s)	252
PctI	GAATGC	1 cut(s)	582
PflMI	CCANNNNNTGG	1 cut(s)	577
PkrI	GCNGC	4 cut(s)	52, 112, 218, 456
Ple19I	CGATCG	1 cut(s)	634
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	169
PspFI	CCCAGC	1 cut(s)	720
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	420
PsuI	RGATCY	2 cut(s)	23, 729
PvuI	CGATCG	1 cut(s)	634
RsaI	GTAC	3 cut(s)	146, 530, 602
RsaNI	GTAC	3 cut(s)	145, 529, 601
RseI	CAYNNNNRTG	1 cut(s)	486
SaqAI	TTAA	2 cut(s)	435, 620
SatI	GCNGC	4 cut(s)	51, 111, 217, 455
Sau3AI	GATC	5 cut(s)	23, 29, 249, 631, 729
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	1 cut(s)	171
SduI	GDGCHC	1 cut(s)	343
SfaNI	GCATC	2 cut(s)	274, 438
SmiMI	CAYNNNNRTG	1 cut(s)	486
SmlI	CTYRAG	1 cut(s)	746
SmoI	CTYRAG	1 cut(s)	746
Sse9I	AATT	3 cut(s)	309, 436, 695
SsiI	CCGC	2 cut(s)	455, 515
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	169
StyI	CCWWGG	1 cut(s)	288
TaaI	ACNGT	1 cut(s)	605
TaiI	ACGT	1 cut(s)	576
TaqI	TCGA	1 cut(s)	630
TaqII	GACCGA	1 cut(s)	308
TasI	AATT	3 cut(s)	309, 436, 695
TatI	WGTACW	2 cut(s)	144, 600
TauI	GCSGC	1 cut(s)	457
Tru1I	TTAA	2 cut(s)	435, 620
Tru9I	TTAA	2 cut(s)	435, 620
TscAI	CASTG	2 cut(s)	217, 696
TseI	GCWGC	3 cut(s)	50, 110, 216
TspDTI	ATGAA	3 cut(s)	17, 269, 643
TspRI	CASTG	2 cut(s)	217, 696
Van91I	CCANNNNNTGG	1 cut(s)	577
XapI	RAATTY	1 cut(s)	309
XceI	RCATGY	1 cut(s)	454
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.