Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003152

Physical Location & Seq

Genomic Coordinates Reverse (-)

10217641 .. 10219468

Gene Structure 1828 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G24020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCGTCGATGGCTGCAACCACCAATTTCACCAAATCTATGCTCTTTCCATTCTCTCATGTTTCAGGAAATGCGAGCTTGAATTCGCAGAGAAGAACATGGCCAAAGCAGTACAAGTCTAAAAATGGTTACAGGTCTCTTCGAGTGAATGGATTATTTGGAGGTGGAAACAAAGATAATAACAGTGAAGATGGACAATCAAAGGCAGGAATATTTGGTAATATGCAGAATATGTATGAGACTGTGAAGAAAGCTCAAATGGTTGTTCAAGTGGAAGCTGTACGTGTTCAAAAAGAGTTAGCTGCCGCAGAATTTGATGGTTATTGTGCAGGCGAGCTTGTCAAGGTTACGTTATCAGGTAACCAGCAACCAATCCGTACTGATATTACCGAGGCAGCAATGGAACTAGGTTCCGAAAAACTATCACAACTTGTCACAGAAGCATACAAGGACGCACACGCCAAGAGTGTGGTGGCTATGAAAGAGAGAATGAGTGACCTTGCGCAGAGCTTAGGAATGCCACCGGGTCTCAGCGAAGGAATGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YbaB_DNA_bd

Protein Analysis

182

Amino Acids

19.81

Weight (kDa)

9.14

Isoelectric Point (pI)

33.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YbaB_DNA_bd	PF02575	83 - 170	5.9e-16	YbaB/EbfC DNA-binding family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24020 AT2G24020 AT4G30620
fragaria_vesca	FvH4_2g41160
malus_domestica	MD08G1056000.v1.1 MD15G1041000.v1.1
prunus_persica	Prupe.1G394300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1
pyrus_communis	pycom08g04600
rosa_chinensis	RchiOBHm_Chr6g0299371
rosa_laevigata	RLG00000011438
rosa_multiflora	Rmu_sc0013965.1_g000001 Rmu_sc0017526.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168750
rosa_rugosa	Rorug06G0287600 Rorug06G0287600
rosa_samantha	Rh6AG399200 Rh6BG407600 Rh6CG413500
rosa_wichuraiana	Rw6G034950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	504
AciI	CCGC	1 cut(s)	306
AcoI	YGGCCR	1 cut(s)	101
AcsI	RAATTY	2 cut(s)	82, 311
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	113, 282, 379
AflIII	ACRYGT	1 cut(s)	283
AgsI	TTSAA	3 cut(s)	82, 269, 290
AluBI	AGCT	6 cut(s)	78, 254, 278, 302, 337, 510
AluI	AGCT	6 cut(s)	78, 254, 278, 302, 337, 510
Alw26I	GTCTC	3 cut(s)	141, 233, 533
AoxI	GGCC	1 cut(s)	101
ApeKI	GCWGC	3 cut(s)	14, 302, 395
ApoI	RAATTY	2 cut(s)	82, 311
AspLEI	GCGC	1 cut(s)	505
AsuC2I	CCSGG	1 cut(s)	525
AsuHPI	GGTGA	1 cut(s)	22
BalI	TGGCCA	1 cut(s)	103
BbvI	GCAGC	2 cut(s)	289, 407
BccI	CCATC	3 cut(s)	4, 185, 311
BcnI	CCSGG	1 cut(s)	525
BcoDI	GTCTC	3 cut(s)	141, 233, 533
BfaI	CTAG	1 cut(s)	407
BisI	GCNGC	4 cut(s)	15, 303, 306, 396
BlsI	GCNGC	4 cut(s)	16, 304, 307, 397
Bme1390I	CCNGG	1 cut(s)	525
BmiI	GGNNCC	1 cut(s)	412
BmrFI	CCNGG	1 cut(s)	525
Bpu10I	CCTNAGC	1 cut(s)	511
BpuMI	CCSGG	1 cut(s)	525
BsaAI	YACGTR	1 cut(s)	284
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	2 cut(s)	141, 533
BsaJI	CCNNGG	1 cut(s)	390
Bse3DI	GCAATG	1 cut(s)	405
BseDI	CCNNGG	1 cut(s)	390
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	1 cut(s)	544
BseXI	GCAGC	2 cut(s)	289, 407
BsgI	GTGCAG	1 cut(s)	348
BshFI	GGCC	1 cut(s)	103
BsiSI	CCGG	1 cut(s)	524
BsmAI	GTCTC	3 cut(s)	141, 233, 533
BsmI	GAATGC	1 cut(s)	522
BsnI	GGCC	1 cut(s)	103
Bso31I	GGTCTC	2 cut(s)	141, 533
BspACI	CCGC	1 cut(s)	306
BspANI	GGCC	1 cut(s)	103
BspCNI	CTCAG	1 cut(s)	543
BspLI	GGNNCC	1 cut(s)	412
BspTNI	GGTCTC	2 cut(s)	141, 533
BsrDI	GCAATG	1 cut(s)	405
BssECI	CCNNGG	1 cut(s)	390
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	2 cut(s)	185, 244
Bst6I	CTCTTC	1 cut(s)	144
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	284
BstC8I	GCNNGC	3 cut(s)	76, 331, 335
BstDEI	CTNAG	2 cut(s)	511, 530
BstEII	GGTNACC	1 cut(s)	359
BstHHI	GCGC	1 cut(s)	505
BstMAI	GTCTC	3 cut(s)	141, 233, 533
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstPI	GGTNACC	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	523
BstV1I	GCAGC	2 cut(s)	289, 407
BstXI	CCANNNNNNTGG	1 cut(s)	469
BsuRI	GGCC	1 cut(s)	103
BtsIMutI	CAGTG	1 cut(s)	190
Cac8I	GCNNGC	3 cut(s)	76, 331, 335
CfoI	GCGC	1 cut(s)	505
CseI	GACGC	1 cut(s)	461
Csp6I	GTAC	3 cut(s)	112, 281, 378
CviAII	CATG	2 cut(s)	59, 99
CviJI	RGCY	9 cut(s)	14, 78, 103, 254, 278, 302, 337, 476, 510
CviKI_1	RGCY	9 cut(s)	14, 78, 103, 254, 278, 302, 337, 476, 510
CviQI	GTAC	3 cut(s)	112, 281, 378
DdeI	CTNAG	2 cut(s)	511, 530
EaeI	YGGCCR	1 cut(s)	101
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco31I	GGTCTC	2 cut(s)	141, 533
Eco91I	GGTNACC	1 cut(s)	359
EcoO65I	GGTNACC	1 cut(s)	359
EcoRI	GAATTC	1 cut(s)	82
FaeI	CATG	2 cut(s)	62, 102
FaiI	YATR	8 cut(s)	41, 60, 100, 224, 233, 237, 445, 479
FatI	CATG	2 cut(s)	58, 98
Fnu4HI	GCNGC	4 cut(s)	15, 303, 306, 396
Fsp4HI	GCNGC	4 cut(s)	15, 303, 306, 396
FspBI	CTAG	1 cut(s)	407
FspI	TGCGCA	1 cut(s)	504
GlaI	GCGC	1 cut(s)	504
GluI	GCNGC	4 cut(s)	15, 303, 306, 396
HaeIII	GGCC	1 cut(s)	103
HapII	CCGG	1 cut(s)	524
HgaI	GACGC	1 cut(s)	461
HhaI	GCGC	1 cut(s)	505
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	62, 102
Hin6I	GCGC	1 cut(s)	503
HinP1I	GCGC	1 cut(s)	503
HpaII	CCGG	1 cut(s)	524
HphI	GGTGA	1 cut(s)	22
Hpy188I	TCNGA	1 cut(s)	415
Hpy188III	TCNNGA	1 cut(s)	66
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	530
HpyCH4III	ACNGT	2 cut(s)	185, 244
HpyCH4IV	ACGT	2 cut(s)	283, 350
HpyCH4V	TGCA	3 cut(s)	17, 226, 329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	511, 530
HpySE526I	ACGT	2 cut(s)	283, 350
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	62, 102
HspAI	GCGC	1 cut(s)	503
LpnPI	CCDG	7 cut(s)	51, 118, 192, 315, 342, 377, 537
Lsp1109I	GCAGC	2 cut(s)	289, 407
MaeI	CTAG	1 cut(s)	407
MaeII	ACGT	2 cut(s)	283, 350
MaeIII	GTNAC	5 cut(s)	128, 346, 359, 433, 494
MboII	GAAGA	4 cut(s)	105, 131, 200, 259
MlsI	TGGCCA	1 cut(s)	103
MluCI	AATT	3 cut(s)	25, 82, 311
MluNI	TGGCCA	1 cut(s)	103
MnlI	CCTC	2 cut(s)	155, 385
Mox20I	TGGCCA	1 cut(s)	103
MscI	TGGCCA	1 cut(s)	103
Msp20I	TGGCCA	1 cut(s)	103
MspI	CCGG	1 cut(s)	524
MspR9I	CCNGG	1 cut(s)	525
Mva1269I	GAATGC	1 cut(s)	522
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	525
NlaIII	CATG	2 cut(s)	62, 102
NlaIV	GGNNCC	1 cut(s)	412
NmuCI	GTSAC	2 cut(s)	433, 494
NsbI	TGCGCA	1 cut(s)	504
PctI	GAATGC	1 cut(s)	522
PkrI	GCNGC	4 cut(s)	16, 304, 307, 397
Ppu21I	YACGTR	1 cut(s)	284
PspEI	GGTNACC	1 cut(s)	359
PspN4I	GGNNCC	1 cut(s)	412
RsaI	GTAC	3 cut(s)	113, 282, 379
RsaNI	GTAC	3 cut(s)	112, 281, 378
SatI	GCNGC	4 cut(s)	15, 303, 306, 396
ScrFI	CCNGG	1 cut(s)	525
Sse9I	AATT	3 cut(s)	25, 82, 311
SsiI	CCGC	1 cut(s)	306
SspI	AATATT	1 cut(s)	213
SspMI	CTAG	1 cut(s)	407
StyD4I	CCNGG	1 cut(s)	523
TaaI	ACNGT	2 cut(s)	185, 244
TaiI	ACGT	2 cut(s)	286, 353
TaqI	TCGA	2 cut(s)	8, 142
TasI	AATT	3 cut(s)	25, 82, 311
TatI	WGTACW	1 cut(s)	111
TauI	GCSGC	1 cut(s)	308
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	2 cut(s)	433, 494
TseI	GCWGC	3 cut(s)	14, 302, 395
Tsp45I	GTSAC	2 cut(s)	433, 494
TspDTI	ATGAA	1 cut(s)	494
TspGWI	ACGGA	1 cut(s)	365
TspRI	CASTG	1 cut(s)	190
XapI	RAATTY	2 cut(s)	82, 311
XcmI	CCANNNNNNNNNTGG	1 cut(s)	469
XspI	CTAG	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.