Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003152

Physical Location & Seq

Genomic Coordinates Reverse (-)

29173455 .. 29175903

Gene Structure 2449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g41160.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCTTCGACCAGCGCTTTATCCTCGCGGCTTTCCAGCTTTCACAGACTCACCGACTCCGCAGACTATCACTCTTTCCGTGAAGTAAGCTCATATCCAGGCAGTCCAATAGTATCATGGCCTATTAAGACTGGGAGGACGGCCCGATCATCCCGTGTTTATGGTTTATTTGGTGGCAAGAAGGATAACAATGACAAGGGTGATGACAAGGCCGGAATATTCGGTAATATGCAAAATCTGTACGAAACAGTTAAGAAAGCCCAAAATGTTGTACAAGTTGAAGCAGTGCGTGTGCAGAAAGAGCTTGCTGCGGCTGAGTTTGATGGTTACTGTGAAGGTGAGATAATAAAGGTAACGCTTTCTGGTAACCAGCAGCCAGTACGCACAGAGATAACCGAGGCTGCTATGGAACTAGGAGCAGAAAAAGTCTCTCTTTTGGTTACTGAAGCATACAAAGATGCACACCAGAAGAGTGTGGTGGCCATGAAGGAGAGAATGAGTAACCTTGCTCAGAGTTTAGGAATGCCACCAGGCCTCGGCGAACTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YbaB_DNA_bd

Protein Analysis

184

Amino Acids

19.93

Weight (kDa)

7.8

Isoelectric Point (pI)

29.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24020 AT2G24020 AT4G30620
fragaria_vesca	FvH4_2g41160
malus_domestica	MD08G1056000.v1.1 MD15G1041000.v1.1
prunus_persica	Prupe.1G394300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1
pyrus_communis	pycom08g04600
rosa_chinensis	RchiOBHm_Chr6g0299371
rosa_laevigata	RLG00000011438
rosa_multiflora	Rmu_sc0013965.1_g000001 Rmu_sc0017526.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168750
rosa_rugosa	Rorug06G0287600 Rorug06G0287600
rosa_samantha	Rh6AG399200 Rh6BG407600 Rh6CG413500
rosa_wichuraiana	Rw6G034950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	28
AciI	CCGC	3 cut(s)	28, 60, 311
AcoI	YGGCCR	1 cut(s)	480
AcuI	CTGAAG	1 cut(s)	465
AfaI	GTAC	3 cut(s)	242, 273, 381
AfeI	AGCGCT	1 cut(s)	16
AfiI	CCNNNNNNNGG	1 cut(s)	536
AgsI	TTSAA	1 cut(s)	281
AjnI	CCWGG	2 cut(s)	97, 529
AluBI	AGCT	3 cut(s)	39, 90, 304
AluI	AGCT	3 cut(s)	39, 90, 304
Alw26I	GTCTC	1 cut(s)	433
Aor51HI	AGCGCT	1 cut(s)	16
AoxI	GGCC	5 cut(s)	119, 141, 210, 480, 532
ApeKI	GCWGC	3 cut(s)	308, 373, 401
AspLEI	GCGC	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	142
AsuHPI	GGTGA	3 cut(s)	43, 212, 350
BalI	TGGCCA	1 cut(s)	482
BbvI	GCAGC	3 cut(s)	295, 385, 388
BccI	CCATC	1 cut(s)	317
BceAI	ACGGC	1 cut(s)	156
BciT130I	CCWGG	2 cut(s)	99, 531
BcoDI	GTCTC	1 cut(s)	433
BfaI	CTAG	1 cut(s)	413
BfoI	RGCGCY	1 cut(s)	18
BisI	GCNGC	5 cut(s)	29, 309, 312, 374, 402
BlsI	GCNGC	5 cut(s)	30, 310, 313, 375, 403
Bme1390I	CCNGG	2 cut(s)	99, 531
BmgT120I	GGNCC	1 cut(s)	142
BmrFI	CCNGG	2 cut(s)	99, 531
BmrI	ACTGGG	1 cut(s)	141
BmsI	GCATC	1 cut(s)	448
BmuI	ACTGGG	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	530
BsaJI	CCNNGG	2 cut(s)	396, 535
Bsc4I	CCNNNNNNNGG	1 cut(s)	536
Bse1I	ACTGG	2 cut(s)	136, 377
BseBI	CCWGG	2 cut(s)	99, 531
BseDI	CCNNGG	2 cut(s)	396, 535
BseGI	GGATG	1 cut(s)	149
BseLI	CCNNNNNNNGG	1 cut(s)	536
BseMII	CTCAG	2 cut(s)	306, 524
BseNI	ACTGG	2 cut(s)	136, 377
BseXI	GCAGC	3 cut(s)	295, 385, 388
BsgI	GTGCAG	1 cut(s)	314
Bsh1236I	CGCG	1 cut(s)	28
BshFI	GGCC	5 cut(s)	121, 143, 212, 482, 534
BsiSI	CCGG	1 cut(s)	213
BslI	CCNNNNNNNGG	1 cut(s)	536
BsmAI	GTCTC	1 cut(s)	433
BsmI	GAATGC	1 cut(s)	528
BsnI	GGCC	5 cut(s)	121, 143, 212, 482, 534
Bsp1407I	TGTACA	1 cut(s)	271
Bsp143I	GATC	1 cut(s)	146
BspACI	CCGC	3 cut(s)	28, 60, 311
BspANI	GGCC	5 cut(s)	121, 143, 212, 482, 534
BspCNI	CTCAG	2 cut(s)	307, 523
BspFNI	CGCG	1 cut(s)	28
BsrGI	TGTACA	1 cut(s)	271
BsrI	ACTGG	2 cut(s)	136, 377
BssECI	CCNNGG	2 cut(s)	396, 535
BssMI	GATC	1 cut(s)	146
Bst2UI	CCWGG	2 cut(s)	99, 531
Bst4CI	ACNGT	2 cut(s)	250, 332
Bst6I	CTCTTC	1 cut(s)	464
BstAUI	TGTACA	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	2 cut(s)	315, 510
BstEII	GGTNACC	1 cut(s)	365
BstF5I	GGATG	1 cut(s)	149
BstFNI	CGCG	1 cut(s)	28
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	1 cut(s)	149
BstMAI	GTCTC	1 cut(s)	433
BstMBI	GATC	1 cut(s)	146
BstMWI	GCNNNNNNNGC	1 cut(s)	301
BstNI	CCWGG	2 cut(s)	99, 531
BstPI	GGTNACC	1 cut(s)	365
BstSCI	CCNGG	2 cut(s)	97, 529
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	3 cut(s)	295, 385, 388
BsuRI	GGCC	5 cut(s)	121, 143, 212, 482, 534
BtsCI	GGATG	1 cut(s)	149
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	1 cut(s)	291
Cac8I	GCNNGC	1 cut(s)	306
CfoI	GCGC	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	142
Csp6I	GTAC	3 cut(s)	241, 272, 380
CviAII	CATG	2 cut(s)	117, 484
CviQI	GTAC	3 cut(s)	241, 272, 380
DdeI	CTNAG	2 cut(s)	315, 510
DpnI	GATC	1 cut(s)	148
DpnII	GATC	1 cut(s)	146
EaeI	YGGCCR	1 cut(s)	480
Eam1104I	CTCTTC	1 cut(s)	464
EarI	CTCTTC	1 cut(s)	464
Eco147I	AGGCCT	1 cut(s)	534
Eco47III	AGCGCT	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	465
Eco91I	GGTNACC	1 cut(s)	365
EcoO65I	GGTNACC	1 cut(s)	365
EcoRII	CCWGG	2 cut(s)	97, 529
FaeI	CATG	2 cut(s)	120, 487
FaiI	YATR	7 cut(s)	94, 118, 162, 230, 407, 451, 485
FalI	AAGNNNNNCTT	2 cut(s)	417, 449
FatI	CATG	2 cut(s)	116, 483
Fnu4HI	GCNGC	5 cut(s)	29, 309, 312, 374, 402
FokI	GGATG	1 cut(s)	136
Fsp4HI	GCNGC	5 cut(s)	29, 309, 312, 374, 402
FspBI	CTAG	1 cut(s)	413
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	5 cut(s)	29, 309, 312, 374, 402
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	5 cut(s)	121, 143, 212, 482, 534
HapII	CCGG	1 cut(s)	213
HhaI	GCGC	1 cut(s)	17
Hin1II	CATG	2 cut(s)	120, 487
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HinfI	GANTC	2 cut(s)	48, 56
HpaII	CCGG	1 cut(s)	213
HphI	GGTGA	3 cut(s)	43, 212, 350
Hpy188I	TCNGA	1 cut(s)	513
HpyAV	CCTTC	3 cut(s)	175, 329, 481
HpyCH4III	ACNGT	2 cut(s)	250, 332
HpyCH4V	TGCA	3 cut(s)	232, 295, 461
HpyF10VI	GCNNNNNNNGC	1 cut(s)	301
HpyF3I	CTNAG	2 cut(s)	315, 510
Hsp92II	CATG	2 cut(s)	120, 487
HspAI	GCGC	1 cut(s)	15
Kzo9I	GATC	1 cut(s)	146
LmnI	GCTCC	1 cut(s)	416
Lsp1109I	GCAGC	3 cut(s)	295, 385, 388
LweI	GCATC	1 cut(s)	448
MaeI	CTAG	1 cut(s)	413
MaeIII	GTNAC	5 cut(s)	326, 352, 365, 439, 500
MalI	GATC	1 cut(s)	148
MboI	GATC	1 cut(s)	146
MboII	GAAGA	1 cut(s)	481
MlsI	TGGCCA	1 cut(s)	482
MluNI	TGGCCA	1 cut(s)	482
MlyI	GAGTC	2 cut(s)	42, 50
MnlI	CCTC	4 cut(s)	34, 129, 391, 545
Mox20I	TGGCCA	1 cut(s)	482
MscI	TGGCCA	1 cut(s)	482
MseI	TTAA	2 cut(s)	126, 252
Msp20I	TGGCCA	1 cut(s)	482
MspI	CCGG	1 cut(s)	213
MspR9I	CCNGG	2 cut(s)	99, 531
Mva1269I	GAATGC	1 cut(s)	528
MvaI	CCWGG	2 cut(s)	99, 531
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	1 cut(s)	301
NdeII	GATC	1 cut(s)	146
NlaIII	CATG	2 cut(s)	120, 487
NmeAIII	GCCGAG	1 cut(s)	516
PceI	AGGCCT	1 cut(s)	534
PctI	GAATGC	1 cut(s)	528
PkrI	GCNGC	5 cut(s)	30, 310, 313, 375, 403
PleI	GAGTC	2 cut(s)	42, 50
PpsI	GAGTC	2 cut(s)	42, 50
Psp6I	CCWGG	2 cut(s)	97, 529
PspEI	GGTNACC	1 cut(s)	365
PspGI	CCWGG	2 cut(s)	97, 529
PspPI	GGNCC	1 cut(s)	142
RsaI	GTAC	3 cut(s)	242, 273, 381
RsaNI	GTAC	3 cut(s)	241, 272, 380
SaqAI	TTAA	2 cut(s)	126, 252
SatI	GCNGC	5 cut(s)	29, 309, 312, 374, 402
Sau3AI	GATC	1 cut(s)	146
Sau96I	GGNCC	1 cut(s)	142
SchI	GAGTC	2 cut(s)	42, 50
ScrFI	CCNGG	2 cut(s)	99, 531
SetI	ASST	6 cut(s)	41, 92, 306, 340, 354, 507
SfaNI	GCATC	1 cut(s)	448
SmlI	CTYRAG	1 cut(s)	545
SmoI	CTYRAG	1 cut(s)	545
SseBI	AGGCCT	1 cut(s)	534
SsiI	CCGC	3 cut(s)	28, 60, 311
SspI	AATATT	1 cut(s)	219
SspMI	CTAG	1 cut(s)	413
StuI	AGGCCT	1 cut(s)	534
StyD4I	CCNGG	2 cut(s)	97, 529
TaaI	ACNGT	2 cut(s)	250, 332
TaqI	TCGA	1 cut(s)	8
TatI	WGTACW	1 cut(s)	271
TauI	GCSGC	2 cut(s)	31, 314
Tru1I	TTAA	2 cut(s)	126, 252
Tru9I	TTAA	2 cut(s)	126, 252
TscAI	CASTG	1 cut(s)	291
TseI	GCWGC	3 cut(s)	308, 373, 401
TspDTI	ATGAA	1 cut(s)	500
TspGWI	ACGGA	1 cut(s)	68
TspRI	CASTG	1 cut(s)	291
XcmI	CCANNNNNNNNNTGG	1 cut(s)	114
XspI	CTAG	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.