Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003152

Physical Location & Seq

Genomic Coordinates Reverse (-)

35063189 .. 35066115

Gene Structure 2927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G394300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCTTCGACCAGTGCTTTAAGCTCACGGCTTTCCAACTTTCGCCGACTCACCGACTCCGAAGACCATCTCTCTTTCCGTGACGTACTAAATTCACGTCCAGCATGCCCTTCAATTGTATCTTGGCCTGGTGTTAAAACTAGGAGGGCTCCCCGGTCGTCTCGTGTGTATGGCTTATTTGGAGGGAAAAAGGATAACAATGAAAAGGGTGATGATGCAGCTTCAAAGGCAGGAATATTTGGTAATATGCAAAATCTGTATGAAACGGTTAAAAAGGCTCAAAATGTAGTACAAGTTGAAGCAGTGCGTGTGCAGAAAGAGCTTGCTGCGGCAGAGTTTGATGGTTACTGTGAAGGTGAGATAATTAAGGTAACGCTTTCTGGTAACCAGCAACCTGTACGTACTGAGATAACTGAGGCTGCTATGGAACTAGGAGCAGAAAAACTTTCTCTTTTGGTCACCGAAGCGTACAAAGATGCACACCAGAAGAGCGTTGTGGCCATGAAGGAGAGAATGAGCAACCTTGCCCAGAGTTTAGGAATGCCTCCAGGCCTCGGTGAATTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YbaB_DNA_bd

Protein Analysis

190

Amino Acids

20.62

Weight (kDa)

8.85

Isoelectric Point (pI)

40.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24020 AT2G24020 AT4G30620
fragaria_vesca	FvH4_2g41160
malus_domestica	MD08G1056000.v1.1 MD15G1041000.v1.1
prunus_persica	Prupe.1G394300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1
pyrus_communis	pycom08g04600
rosa_chinensis	RchiOBHm_Chr6g0299371
rosa_laevigata	RLG00000011438
rosa_multiflora	Rmu_sc0013965.1_g000001 Rmu_sc0017526.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168750
rosa_rugosa	Rorug06G0287600 Rorug06G0287600
rosa_samantha	Rh6AG399200 Rh6BG407600 Rh6CG413500
rosa_wichuraiana	Rw6G034950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	329
AcoI	YGGCCR	1 cut(s)	498
AcsI	RAATTY	1 cut(s)	91
AfaI	GTAC	5 cut(s)	87, 291, 399, 403, 470
AfiI	CCNNNNNNNGG	1 cut(s)	554
AgsI	TTSAA	4 cut(s)	114, 225, 299, 565
AjiI	CACGTC	1 cut(s)	98
AjnI	CCWGG	2 cut(s)	127, 547
AluBI	AGCT	3 cut(s)	24, 221, 322
AluI	AGCT	3 cut(s)	24, 221, 322
Alw26I	GTCTC	1 cut(s)	165
AoxI	GGCC	3 cut(s)	125, 498, 550
ApeKI	GCWGC	3 cut(s)	218, 326, 419
ApoI	RAATTY	1 cut(s)	91
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	5 cut(s)	43, 221, 368, 451, 569
BalI	TGGCCA	1 cut(s)	500
BanII	GRGCYC	1 cut(s)	151
BauI	CACGAG	1 cut(s)	162
BbsI	GAAGAC	1 cut(s)	69
BbvI	GCAGC	3 cut(s)	230, 313, 406
BccI	CCATC	2 cut(s)	75, 335
BceAI	ACGGC	1 cut(s)	44
BciT130I	CCWGG	2 cut(s)	129, 549
BcnI	CCSGG	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	2 cut(s)	141, 431
BisI	GCNGC	4 cut(s)	219, 327, 330, 420
BlsI	GCNGC	4 cut(s)	220, 328, 331, 421
Bme1390I	CCNGG	3 cut(s)	129, 154, 549
BmgBI	CACGTC	1 cut(s)	98
BmiI	GGNNCC	1 cut(s)	150
BmrFI	CCNGG	3 cut(s)	129, 154, 549
BmsI	GCATC	2 cut(s)	205, 466
BpiI	GAAGAC	1 cut(s)	69
BpmI	CTGGAG	1 cut(s)	531
BpuMI	CCSGG	1 cut(s)	154
BsaAI	YACGTR	1 cut(s)	401
BsaJI	CCNNGG	2 cut(s)	152, 553
Bsc4I	CCNNNNNNNGG	1 cut(s)	554
Bse1I	ACTGG	1 cut(s)	12
BseBI	CCWGG	2 cut(s)	129, 549
BseDI	CCNNGG	2 cut(s)	152, 553
BseLI	CCNNNNNNNGG	1 cut(s)	554
BseMII	CTCAG	2 cut(s)	396, 405
BseNI	ACTGG	1 cut(s)	12
BseXI	GCAGC	3 cut(s)	230, 313, 406
BsgI	GTGCAG	1 cut(s)	332
Bsh1285I	CGRYCG	1 cut(s)	158
BshFI	GGCC	3 cut(s)	127, 500, 552
BsiEI	CGRYCG	1 cut(s)	158
BsiSI	CCGG	1 cut(s)	154
BslI	CCNNNNNNNGG	1 cut(s)	554
BsmAI	GTCTC	1 cut(s)	165
BsmBI	CGTCTC	1 cut(s)	165
BsmI	GAATGC	1 cut(s)	546
BsnI	GGCC	3 cut(s)	127, 500, 552
Bsp1286I	GDGCHC	1 cut(s)	151
BspACI	CCGC	1 cut(s)	329
BspANI	GGCC	3 cut(s)	127, 500, 552
BspCNI	CTCAG	2 cut(s)	397, 406
BspLI	GGNNCC	1 cut(s)	150
BspQI	GCTCTTC	1 cut(s)	482
BsrI	ACTGG	1 cut(s)	12
BssECI	CCNNGG	2 cut(s)	152, 553
BssSI	CACGAG	1 cut(s)	162
Bst2BI	CACGAG	1 cut(s)	162
Bst2UI	CCWGG	2 cut(s)	129, 549
Bst4CI	ACNGT	2 cut(s)	268, 350
Bst6I	CTCTTC	1 cut(s)	482
BstBAI	YACGTR	1 cut(s)	401
BstC8I	GCNNGC	2 cut(s)	106, 324
BstDEI	CTNAG	2 cut(s)	405, 414
BstEII	GGTNACC	2 cut(s)	383, 457
BstMAI	GTCTC	1 cut(s)	165
BstMCI	CGRYCG	1 cut(s)	158
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 319
BstNI	CCWGG	2 cut(s)	129, 549
BstNSI	RCATGY	1 cut(s)	108
BstPI	GGTNACC	2 cut(s)	383, 457
BstSCI	CCNGG	3 cut(s)	127, 152, 547
BstSNI	TACGTA	1 cut(s)	401
BstV1I	GCAGC	3 cut(s)	230, 313, 406
BstV2I	GAAGAC	1 cut(s)	69
BsuRI	GGCC	3 cut(s)	127, 500, 552
BtrI	CACGTC	1 cut(s)	98
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	2 cut(s)	19, 309
Cac8I	GCNNGC	2 cut(s)	106, 324
Csp6I	GTAC	5 cut(s)	86, 290, 398, 402, 469
CviAII	CATG	2 cut(s)	105, 502
CviQI	GTAC	5 cut(s)	86, 290, 398, 402, 469
DdeI	CTNAG	2 cut(s)	405, 414
EaeI	YGGCCR	1 cut(s)	498
Eam1104I	CTCTTC	1 cut(s)	482
EarI	CTCTTC	1 cut(s)	482
Eco105I	TACGTA	1 cut(s)	401
Eco147I	AGGCCT	1 cut(s)	552
Eco24I	GRGCYC	1 cut(s)	151
Eco91I	GGTNACC	2 cut(s)	383, 457
EcoO65I	GGTNACC	2 cut(s)	383, 457
EcoRII	CCWGG	2 cut(s)	127, 547
EcoT38I	GRGCYC	1 cut(s)	151
Esp3I	CGTCTC	1 cut(s)	165
FaeI	CATG	2 cut(s)	108, 505
FaiI	YATR	6 cut(s)	106, 171, 248, 261, 425, 503
FatI	CATG	2 cut(s)	104, 501
Fnu4HI	GCNGC	4 cut(s)	219, 327, 330, 420
FriOI	GRGCYC	1 cut(s)	151
Fsp4HI	GCNGC	4 cut(s)	219, 327, 330, 420
FspBI	CTAG	2 cut(s)	141, 431
GluI	GCNGC	4 cut(s)	219, 327, 330, 420
GsuI	CTGGAG	1 cut(s)	531
HaeIII	GGCC	3 cut(s)	127, 500, 552
HapII	CCGG	1 cut(s)	154
Hin1II	CATG	2 cut(s)	108, 505
HinfI	GANTC	2 cut(s)	48, 56
HpaII	CCGG	1 cut(s)	154
HphI	GGTGA	5 cut(s)	43, 221, 368, 451, 569
Hpy188I	TCNGA	1 cut(s)	61
HpyAV	CCTTC	3 cut(s)	120, 347, 499
HpyCH4III	ACNGT	2 cut(s)	268, 350
HpyCH4IV	ACGT	3 cut(s)	84, 97, 400
HpyCH4V	TGCA	4 cut(s)	218, 250, 313, 479
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 319
HpyF3I	CTNAG	2 cut(s)	405, 414
HpySE526I	ACGT	3 cut(s)	84, 97, 400
Hsp92II	CATG	2 cut(s)	108, 505
LguI	GCTCTTC	1 cut(s)	482
LmnI	GCTCC	2 cut(s)	154, 434
Lsp1109I	GCAGC	3 cut(s)	230, 313, 406
LweI	GCATC	2 cut(s)	205, 466
MaeI	CTAG	2 cut(s)	141, 431
MaeII	ACGT	3 cut(s)	84, 97, 400
MaeIII	GTNAC	5 cut(s)	80, 344, 370, 383, 457
MboII	GAAGA	2 cut(s)	74, 499
MfeI	CAATTG	1 cut(s)	114
MhlI	GDGCHC	1 cut(s)	151
MlsI	TGGCCA	1 cut(s)	500
MluCI	AATT	4 cut(s)	91, 114, 363, 560
MluNI	TGGCCA	1 cut(s)	500
MlyI	GAGTC	2 cut(s)	42, 50
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	5 cut(s)	138, 176, 409, 555, 563
Mox20I	TGGCCA	1 cut(s)	500
MscI	TGGCCA	1 cut(s)	500
MseI	TTAA	4 cut(s)	20, 135, 270, 366
Msp20I	TGGCCA	1 cut(s)	500
MspI	CCGG	1 cut(s)	154
MspR9I	CCNGG	3 cut(s)	129, 154, 549
MunI	CAATTG	1 cut(s)	114
Mva1269I	GAATGC	1 cut(s)	546
MvaI	CCWGG	2 cut(s)	129, 549
MwoI	GCNNNNNNNGC	2 cut(s)	227, 319
NciI	CCSGG	1 cut(s)	154
NlaIII	CATG	2 cut(s)	108, 505
NlaIV	GGNNCC	1 cut(s)	150
NmuCI	GTSAC	2 cut(s)	80, 457
NspI	RCATGY	1 cut(s)	108
PaeI	GCATGC	1 cut(s)	108
PceI	AGGCCT	1 cut(s)	552
PciSI	GCTCTTC	1 cut(s)	482
PctI	GAATGC	1 cut(s)	546
PkrI	GCNGC	4 cut(s)	220, 328, 331, 421
PleI	GAGTC	2 cut(s)	42, 50
PpsI	GAGTC	2 cut(s)	42, 50
Ppu21I	YACGTR	1 cut(s)	401
Psp6I	CCWGG	2 cut(s)	127, 547
PspEI	GGTNACC	2 cut(s)	383, 457
PspGI	CCWGG	2 cut(s)	127, 547
PspN4I	GGNNCC	1 cut(s)	150
RsaI	GTAC	5 cut(s)	87, 291, 399, 403, 470
RsaNI	GTAC	5 cut(s)	86, 290, 398, 402, 469
SapI	GCTCTTC	1 cut(s)	482
SaqAI	TTAA	4 cut(s)	20, 135, 270, 366
SatI	GCNGC	4 cut(s)	219, 327, 330, 420
SchI	GAGTC	2 cut(s)	42, 50
ScrFI	CCNGG	3 cut(s)	129, 154, 549
SduI	GDGCHC	1 cut(s)	151
SfaNI	GCATC	2 cut(s)	205, 466
SnaBI	TACGTA	1 cut(s)	401
SphI	GCATGC	1 cut(s)	108
Sse9I	AATT	4 cut(s)	91, 114, 363, 560
SseBI	AGGCCT	1 cut(s)	552
SsiI	CCGC	1 cut(s)	329
SspI	AATATT	1 cut(s)	237
SspMI	CTAG	2 cut(s)	141, 431
StuI	AGGCCT	1 cut(s)	552
StyD4I	CCNGG	3 cut(s)	127, 152, 547
TaaI	ACNGT	2 cut(s)	268, 350
TaiI	ACGT	3 cut(s)	87, 100, 403
TaqI	TCGA	1 cut(s)	8
TasI	AATT	4 cut(s)	91, 114, 363, 560
TatI	WGTACW	1 cut(s)	289
TauI	GCSGC	1 cut(s)	332
Tru1I	TTAA	4 cut(s)	20, 135, 270, 366
Tru9I	TTAA	4 cut(s)	20, 135, 270, 366
TscAI	CASTG	2 cut(s)	19, 309
TseFI	GTSAC	2 cut(s)	80, 457
TseI	GCWGC	3 cut(s)	218, 326, 419
Tsp45I	GTSAC	2 cut(s)	80, 457
TspDTI	ATGAA	3 cut(s)	216, 276, 518
TspGWI	ACGGA	1 cut(s)	68
TspRI	CASTG	2 cut(s)	19, 309
XapI	RAATTY	1 cut(s)	91
XceI	RCATGY	1 cut(s)	108
XspI	CTAG	2 cut(s)	141, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.