Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013965.1

Orthogroup ID

OG0003152

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1554

Gene Structure 1554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013965.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

gctggaatattcggtaatatgcaaaatctgtatgaaacagttaagaaagcccaaaatgtagtacaagttgaagcagtgcgtgtgcagaaagagcttgctgcggccgagtttgatggttactgtgaaggtgagataataaaggtaacgctttctggtaaccagcagccagtacgcacagagataaccgaggccgctatggaactaggagccgaaaaagtctctcttttggttactgaagcatacaaagacgcacaccagaagagtgtcgtggccatgaaggagagaatgagtaaccttgctcagagtttaggaatgccaccaggccttggcgaactgaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YbaB_DNA_bd

Protein Analysis

113

Amino Acids

12.27

Weight (kDa)

5.19

Isoelectric Point (pI)

24.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24020 AT2G24020 AT4G30620
fragaria_vesca	FvH4_2g41160
malus_domestica	MD08G1056000.v1.1 MD15G1041000.v1.1
prunus_persica	Prupe.1G394300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1
pyrus_communis	pycom08g04600
rosa_chinensis	RchiOBHm_Chr6g0299371
rosa_laevigata	RLG00000011438
rosa_multiflora	Rmu_sc0013965.1_g000001 Rmu_sc0017526.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168750
rosa_rugosa	Rorug06G0287600 Rorug06G0287600
rosa_samantha	Rh6AG399200 Rh6BG407600 Rh6CG413500
rosa_wichuraiana	Rw6G034950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	326
AciI	CCGC	2 cut(s)	101, 192
AcoI	YGGCCR	2 cut(s)	102, 270
AcuI	CTGAAG	1 cut(s)	255
AfaI	GTAC	2 cut(s)	63, 171
AfiI	CCNNNNNNNGG	1 cut(s)	326
AgsI	TTSAA	1 cut(s)	71
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
Alw26I	GTCTC	1 cut(s)	223
AoxI	GGCC	4 cut(s)	102, 189, 270, 322
ApeKI	GCWGC	2 cut(s)	98, 163
AsuHPI	GGTGA	1 cut(s)	140
BalI	TGGCCA	1 cut(s)	272
BbvI	GCAGC	2 cut(s)	85, 175
BccI	CCATC	1 cut(s)	107
BciT130I	CCWGG	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	1 cut(s)	203
BisI	GCNGC	4 cut(s)	99, 102, 164, 192
BlsI	GCNGC	4 cut(s)	100, 103, 165, 193
Bme1390I	CCNGG	1 cut(s)	321
BmiI	GGNNCC	1 cut(s)	208
BmrFI	CCNGG	1 cut(s)	321
BsaJI	CCNNGG	2 cut(s)	186, 325
Bsc4I	CCNNNNNNNGG	1 cut(s)	326
Bse1I	ACTGG	1 cut(s)	167
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	2 cut(s)	186, 325
BseLI	CCNNNNNNNGG	1 cut(s)	326
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	1 cut(s)	167
BseX3I	CGGCCG	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	85, 175
BsgI	GTGCAG	1 cut(s)	104
Bsh1285I	CGRYCG	1 cut(s)	105
BshFI	GGCC	4 cut(s)	104, 191, 272, 324
BsiEI	CGRYCG	1 cut(s)	105
BslI	CCNNNNNNNGG	1 cut(s)	326
BsmAI	GTCTC	1 cut(s)	223
BsmI	GAATGC	1 cut(s)	318
BsnI	GGCC	4 cut(s)	104, 191, 272, 324
BspACI	CCGC	2 cut(s)	101, 192
BspANI	GGCC	4 cut(s)	104, 191, 272, 324
BspCNI	CTCAG	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	167
BssECI	CCNNGG	2 cut(s)	186, 325
BssT1I	CCWWGG	1 cut(s)	325
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	2 cut(s)	40, 122
Bst6I	CTCTTC	1 cut(s)	254
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	1 cut(s)	300
BstEII	GGTNACC	1 cut(s)	155
BstMAI	GTCTC	1 cut(s)	223
BstMCI	CGRYCG	1 cut(s)	105
BstMWI	GCNNNNNNNGC	1 cut(s)	91
BstNI	CCWGG	1 cut(s)	321
BstPI	GGTNACC	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	319
BstV1I	GCAGC	2 cut(s)	85, 175
BstZI	CGGCCG	1 cut(s)	102
BsuRI	GGCC	4 cut(s)	104, 191, 272, 324
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	81
Cac8I	GCNNGC	1 cut(s)	96
CseI	GACGC	1 cut(s)	257
Csp6I	GTAC	2 cut(s)	62, 170
CviAII	CATG	1 cut(s)	274
CviJI	RGCY	8 cut(s)	50, 94, 104, 166, 191, 209, 272, 324
CviKI_1	RGCY	8 cut(s)	50, 94, 104, 166, 191, 209, 272, 324
CviQI	GTAC	2 cut(s)	62, 170
DdeI	CTNAG	1 cut(s)	300
EaeI	YGGCCR	2 cut(s)	102, 270
EagI	CGGCCG	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
EclXI	CGGCCG	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	325
Eco147I	AGGCCT	1 cut(s)	324
Eco52I	CGGCCG	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	255
Eco91I	GGTNACC	1 cut(s)	155
EcoO65I	GGTNACC	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	325
ErhI	CCWWGG	1 cut(s)	325
FaeI	CATG	1 cut(s)	277
FaiI	YATR	5 cut(s)	20, 33, 197, 241, 275
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FatI	CATG	1 cut(s)	273
Fnu4HI	GCNGC	4 cut(s)	99, 102, 164, 192
Fsp4HI	GCNGC	4 cut(s)	99, 102, 164, 192
FspBI	CTAG	1 cut(s)	203
GluI	GCNGC	4 cut(s)	99, 102, 164, 192
HaeIII	GGCC	4 cut(s)	104, 191, 272, 324
HgaI	GACGC	1 cut(s)	257
Hin1II	CATG	1 cut(s)	277
HphI	GGTGA	1 cut(s)	140
Hpy188I	TCNGA	1 cut(s)	303
HpyAV	CCTTC	2 cut(s)	119, 271
HpyCH4III	ACNGT	2 cut(s)	40, 122
HpyCH4V	TGCA	2 cut(s)	22, 85
HpyF10VI	GCNNNNNNNGC	1 cut(s)	91
HpyF3I	CTNAG	1 cut(s)	300
Hsp92II	CATG	1 cut(s)	277
LmnI	GCTCC	1 cut(s)	206
LpnPI	CCDG	6 cut(s)	138, 173, 180, 269, 306, 333
Lsp1109I	GCAGC	2 cut(s)	85, 175
MaeI	CTAG	1 cut(s)	203
MaeIII	GTNAC	5 cut(s)	116, 142, 155, 229, 290
MboII	GAAGA	1 cut(s)	271
MlsI	TGGCCA	1 cut(s)	272
MluNI	TGGCCA	1 cut(s)	272
MnlI	CCTC	1 cut(s)	181
Mox20I	TGGCCA	1 cut(s)	272
MscI	TGGCCA	1 cut(s)	272
MseI	TTAA	1 cut(s)	42
Msp20I	TGGCCA	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	321
Mva1269I	GAATGC	1 cut(s)	318
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	91
NlaIII	CATG	1 cut(s)	277
NlaIV	GGNNCC	1 cut(s)	208
NmeAIII	GCCGAG	1 cut(s)	130
PceI	AGGCCT	1 cut(s)	324
PctI	GAATGC	1 cut(s)	318
PflMI	CCANNNNNTGG	1 cut(s)	326
PkrI	GCNGC	4 cut(s)	100, 103, 165, 193
Psp6I	CCWGG	1 cut(s)	319
PspEI	GGTNACC	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	1 cut(s)	208
RsaI	GTAC	2 cut(s)	63, 171
RsaNI	GTAC	2 cut(s)	62, 170
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	4 cut(s)	99, 102, 164, 192
ScrFI	CCNGG	1 cut(s)	321
SetI	ASST	4 cut(s)	96, 130, 144, 297
SseBI	AGGCCT	1 cut(s)	324
SsiI	CCGC	2 cut(s)	101, 192
SspI	AATATT	1 cut(s)	9
SspMI	CTAG	1 cut(s)	203
StuI	AGGCCT	1 cut(s)	324
StyD4I	CCNGG	1 cut(s)	319
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	2 cut(s)	40, 122
TatI	WGTACW	1 cut(s)	61
TauI	GCSGC	2 cut(s)	104, 194
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	1 cut(s)	81
TseI	GCWGC	2 cut(s)	98, 163
TspDTI	ATGAA	2 cut(s)	48, 290
TspRI	CASTG	1 cut(s)	81
Van91I	CCANNNNNTGG	1 cut(s)	326
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.