Rorug06G0287600

YbaB/EbfC DNA-binding family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003152
Physical Location & Seq
Reverse (-)
43756675 .. 43758797
2123 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0287600.1

Sequence Viewer

Length: 861 bp
ATGCACCATTCCTCACAGCTCAGAGCTCAAAGCAAAGCTCTTCACCCATCATCTGCTTTGCTTCTGAGAAGCAAAATTCCTCTACTGATGCTAGGCAGTTCCACGGCCAGGATTAGGAGTGAAGTTCTCACTCCCTTTCGCTCCGTTCGGATGTTTTTCTATCTTGCTTTCATTGCAAGTGGTGGTTTAGGAACACTGATAGCAACCACACAATTGATTGCAGCACTAACAAACCCATCAAGAGCACTTGATGCCCCTGAAATTGCTAAGGGTCTCGGCATAGACATTTGCGCGGTGTCTCTCTTTGCATTCTTGTATTATAGGGAGAACACTGCCAAGAATGCGCAGATTGCTAGGCTGTCAAGAGAGGAGAACCTTTCGAATCTTAAGCTCCGGGTGGATGAAAAGAGGGTCATTCCTGTCAGCTCTTTGAGAGGGTTTGCTAGGCTTGTGATATGTGCTGGCCCTGCGTCGTTCATCACTGAGTCGTTTAAGTTCAGCGAGCCTTTCACTGAAGGGCTTGTGGAAAGAGGAGTGTTGGTGGTGCCCTTTGCTACAGATGGTAATTCACCAAGTTTTGAGTTTGATGAAAGTGAAGAGTCTAAGGATTTTACTTCAAAGAGAAAGAGACTCTGGCAGCTGAATCCAGTTATTGTTAGTGAATGGACCAATTGGTTAGATGAACAAAAGAAACTGGCTGGTGTCTCCTCTGACTCTCCTGTGTATATATCTCTACGCCTGGACGGTCGTGTTCGTGGCAGTGGCATAGGTTACCCGCCTTGGAATGCTTTTGTTGCACAGTTACCGCCTGTTAAGGGAATGTGGTCAGGTCTTCTGGATGGTTTTGATGGAAGAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YbaB_DNA_bd

Protein Analysis

286

Amino Acids

31.55

Weight (kDa)

9.51

Isoelectric Point (pI)

50.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3493 PF11998 34 - 110 1.5e-24 Low psii accumulation1 / Rep27
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 345
AccB1I GGYRCC 1 cut(s) 544
AccII CGCG 1 cut(s) 293
AciI CCGC 3 cut(s) 293, 776, 806
AcoI YGGCCR 1 cut(s) 105
AcsI RAATTY 1 cut(s) 75
AcuI CTGAAG 1 cut(s) 534
AfiI CCNNNNNNNGG 3 cut(s) 108, 114, 815
AflII CTTAAG 1 cut(s) 386
AgsI TTSAA 1 cut(s) 618
AjnI CCWGG 2 cut(s) 107, 738
AluBI AGCT 6 cut(s) 19, 26, 38, 391, 426, 640
AluI AGCT 6 cut(s) 19, 26, 38, 391, 426, 640
Alw21I GWGCWC 2 cut(s) 28, 247
Alw26I GTCTC 4 cut(s) 278, 303, 622, 709
AoxI GGCC 2 cut(s) 105, 463
ApeKI GCWGC 2 cut(s) 221, 637
ApoI RAATTY 1 cut(s) 75
AspLEI GCGC 2 cut(s) 293, 346
AspS9I GGNCC 2 cut(s) 464, 666
AsuC2I CCSGG 1 cut(s) 395
AsuHPI GGTGA 2 cut(s) 35, 561
AsuII TTCGAA 1 cut(s) 380
AvaII GGWCC 1 cut(s) 666
BaeGI GKGCMC 1 cut(s) 549
BanI GGYRCC 1 cut(s) 544
BanII GRGCYC 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 824
Bbv12I GWGCWC 2 cut(s) 28, 247
BbvI GCAGC 2 cut(s) 233, 649
BccI CCATC 5 cut(s) 55, 244, 554, 833, 842
BceAI ACGGC 1 cut(s) 120
BciT130I CCWGG 2 cut(s) 109, 740
BcnI CCSGG 1 cut(s) 395
BcoDI GTCTC 4 cut(s) 278, 303, 622, 709
BfaI CTAG 3 cut(s) 92, 354, 444
BfmI CTRYAG 1 cut(s) 555
BfrI CTTAAG 1 cut(s) 386
BisI GCNGC 2 cut(s) 222, 638
BlsI GCNGC 2 cut(s) 223, 639
Bme1390I CCNGG 3 cut(s) 109, 395, 740
Bme18I GGWCC 1 cut(s) 666
BmgT120I GGNCC 2 cut(s) 464, 666
BmiI GGNNCC 1 cut(s) 546
BmrFI CCNGG 3 cut(s) 109, 395, 740
BmsI GCATC 2 cut(s) 78, 241
BpiI GAAGAC 1 cut(s) 824
Bpu10I CCTNAGC 1 cut(s) 267
Bpu14I TTCGAA 1 cut(s) 380
BpuMI CCSGG 1 cut(s) 395
BsaI GGTCTC 1 cut(s) 278
BsaJI CCNNGG 2 cut(s) 102, 779
BsaXI ACNNNNNCTCC 2 cut(s) 525, 555
Bsc4I CCNNNNNNNGG 3 cut(s) 108, 114, 815
Bse1I ACTGG 2 cut(s) 647, 699
Bse3DI GCAATG 1 cut(s) 171
BseBI CCWGG 2 cut(s) 109, 740
BseDI CCNNGG 2 cut(s) 102, 779
BseGI GGATG 3 cut(s) 156, 406, 844
BseLI CCNNNNNNNGG 3 cut(s) 108, 114, 815
BseMI GCAATG 1 cut(s) 171
BseMII CTCAG 3 cut(s) 34, 56, 474
BseNI ACTGG 2 cut(s) 647, 699
BseRI GAGGAG 3 cut(s) 383, 546, 697
BseSI GKGCMC 1 cut(s) 549
BseXI GCAGC 2 cut(s) 233, 649
Bsh1236I CGCG 1 cut(s) 293
Bsh1285I CGRYCG 1 cut(s) 748
BshFI GGCC 2 cut(s) 107, 465
BshNI GGYRCC 1 cut(s) 544
BsiEI CGRYCG 1 cut(s) 748
BsiHKAI GWGCWC 2 cut(s) 28, 247
BsiSI CCGG 1 cut(s) 394
BslI CCNNNNNNNGG 3 cut(s) 108, 114, 815
BsmAI GTCTC 4 cut(s) 278, 303, 622, 709
BsmI GAATGC 3 cut(s) 308, 346, 790
BsnI GGCC 2 cut(s) 107, 465
Bso31I GGTCTC 1 cut(s) 278
Bsp119I TTCGAA 1 cut(s) 380
Bsp1286I GDGCHC 3 cut(s) 28, 247, 549
BspACI CCGC 3 cut(s) 293, 776, 806
BspANI GGCC 2 cut(s) 107, 465
BspCNI CTCAG 3 cut(s) 33, 57, 475
BspFNI CGCG 1 cut(s) 293
BspLI GGNNCC 1 cut(s) 546
BspQI GCTCTTC 1 cut(s) 45
BspT104I TTCGAA 1 cut(s) 380
BspT107I GGYRCC 1 cut(s) 544
BspTI CTTAAG 1 cut(s) 386
BspTNI GGTCTC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 171
BsrI ACTGG 2 cut(s) 647, 699
BssECI CCNNGG 2 cut(s) 102, 779
BssT1I CCWWGG 1 cut(s) 779
Bst2UI CCWGG 2 cut(s) 109, 740
Bst4CI ACNGT 2 cut(s) 746, 801
Bst6I CTCTTC 3 cut(s) 45, 591, 847
BstAFI CTTAAG 1 cut(s) 386
BstAPI GCANNNNNTGC 1 cut(s) 251
BstBI TTCGAA 1 cut(s) 380
BstC8I GCNNGC 2 cut(s) 463, 503
BstDEI CTNAG 5 cut(s) 20, 65, 267, 483, 603
BstDSI CCRYGG 1 cut(s) 102
BstEII GGTNACC 1 cut(s) 770
BstF5I GGATG 3 cut(s) 156, 406, 844
BstFNI CGCG 1 cut(s) 293
BstHHI GCGC 2 cut(s) 293, 346
BstMAI GTCTC 4 cut(s) 278, 303, 622, 709
BstMCI CGRYCG 1 cut(s) 748
BstMWI GCNNNNNNNGC 6 cut(s) 173, 251, 341, 350, 467, 794
BstNI CCWGG 2 cut(s) 109, 740
BstPI GGTNACC 1 cut(s) 770
BstSCI CCNGG 3 cut(s) 107, 393, 738
BstSFI CTRYAG 1 cut(s) 555
BstSLI GKGCMC 1 cut(s) 549
BstUI CGCG 1 cut(s) 293
BstV1I GCAGC 2 cut(s) 233, 649
BstV2I GAAGAC 1 cut(s) 824
BsuRI GGCC 2 cut(s) 107, 465
BtgI CCRYGG 1 cut(s) 102
BtsCI GGATG 3 cut(s) 156, 406, 844
BtsI GCAGTG 2 cut(s) 330, 766
BtsIMutI CAGTG 5 cut(s) 194, 330, 480, 510, 766
Cac8I GCNNGC 2 cut(s) 463, 503
CfoI GCGC 2 cut(s) 293, 346
Cfr13I GGNCC 2 cut(s) 464, 666
CseI GACGC 1 cut(s) 459
DdeI CTNAG 5 cut(s) 20, 65, 267, 483, 603
EaeI YGGCCR 1 cut(s) 105
Eam1104I CTCTTC 3 cut(s) 45, 591, 847
EarI CTCTTC 3 cut(s) 45, 591, 847
Ecl136II GAGCTC 1 cut(s) 26
Eco130I CCWWGG 1 cut(s) 779
Eco24I GRGCYC 1 cut(s) 28
Eco31I GGTCTC 1 cut(s) 278
Eco47I GGWCC 1 cut(s) 666
Eco53kI GAGCTC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 534
Eco91I GGTNACC 1 cut(s) 770
EcoICRI GAGCTC 1 cut(s) 26
EcoO65I GGTNACC 1 cut(s) 770
EcoRII CCWGG 2 cut(s) 107, 738
EcoT14I CCWWGG 1 cut(s) 779
EcoT38I GRGCYC 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 779
FaiI YATR 6 cut(s) 281, 321, 457, 726, 728, 767
FauI CCCGC 1 cut(s) 783
Fnu4HI GCNGC 2 cut(s) 222, 638
FokI GGATG 3 cut(s) 163, 413, 851
FriOI GRGCYC 1 cut(s) 28
Fsp4HI GCNGC 2 cut(s) 222, 638
FspBI CTAG 3 cut(s) 92, 354, 444
FspI TGCGCA 1 cut(s) 345
GlaI GCGC 2 cut(s) 292, 345
GluI GCNGC 2 cut(s) 222, 638
HaeIII GGCC 2 cut(s) 107, 465
HapII CCGG 1 cut(s) 394
HgaI GACGC 1 cut(s) 459
HhaI GCGC 2 cut(s) 293, 346
Hin6I GCGC 2 cut(s) 291, 344
HinP1I GCGC 2 cut(s) 291, 344
HinfI GANTC 6 cut(s) 382, 485, 599, 630, 643, 713
HpaII CCGG 1 cut(s) 394
HphI GGTGA 2 cut(s) 35, 561
Hpy188I TCNGA 4 cut(s) 23, 66, 150, 712
Hpy188III TCNNGA 3 cut(s) 240, 363, 836
Hpy99I CGWCG 1 cut(s) 475
HpyAV CCTTC 1 cut(s) 509
HpyCH4III ACNGT 2 cut(s) 746, 801
HpyCH4V TGCA 5 cut(s) 4, 176, 221, 308, 797
HpyF10VI GCNNNNNNNGC 6 cut(s) 173, 251, 341, 350, 467, 794
HpyF3I CTNAG 5 cut(s) 20, 65, 267, 483, 603
HspAI GCGC 2 cut(s) 291, 344
LguI GCTCTTC 1 cut(s) 45
LmnI GCTCC 2 cut(s) 146, 396
Lsp1109I GCAGC 2 cut(s) 233, 649
LweI GCATC 2 cut(s) 78, 241
MaeI CTAG 3 cut(s) 92, 354, 444
MaeIII GTNAC 2 cut(s) 770, 801
MboII GAAGA 3 cut(s) 32, 608, 824
MfeI CAATTG 2 cut(s) 212, 670
MhlI GDGCHC 3 cut(s) 28, 247, 549
MluCI AATT 5 cut(s) 75, 212, 261, 565, 670
MlyI GAGTC 4 cut(s) 494, 608, 624, 707
MnlI CCTC 7 cut(s) 22, 90, 361, 402, 428, 524, 718
MseI TTAA 4 cut(s) 387, 492, 813, 859
MspA1I CMGCKG 1 cut(s) 640
MspCI CTTAAG 1 cut(s) 386
MspI CCGG 1 cut(s) 394
MspR9I CCNGG 3 cut(s) 109, 395, 740
MunI CAATTG 2 cut(s) 212, 670
Mva1269I GAATGC 3 cut(s) 308, 346, 790
MvaI CCWGG 2 cut(s) 109, 740
MvnI CGCG 1 cut(s) 293
MwoI GCNNNNNNNGC 6 cut(s) 173, 251, 341, 350, 467, 794
NciI CCSGG 1 cut(s) 395
NlaIV GGNNCC 1 cut(s) 546
NmeAIII GCCGAG 1 cut(s) 255
NsbI TGCGCA 1 cut(s) 345
NspV TTCGAA 1 cut(s) 380
PciSI GCTCTTC 1 cut(s) 45
PctI GAATGC 3 cut(s) 308, 346, 790
PfeI GAWTC 2 cut(s) 382, 643
PkrI GCNGC 2 cut(s) 223, 639
PleI GAGTC 4 cut(s) 493, 607, 624, 707
PpsI GAGTC 4 cut(s) 493, 607, 624, 707
Psp124BI GAGCTC 1 cut(s) 28
Psp6I CCWGG 2 cut(s) 107, 738
PspEI GGTNACC 1 cut(s) 770
PspGI CCWGG 2 cut(s) 107, 738
PspN4I GGNNCC 1 cut(s) 546
PspPI GGNCC 2 cut(s) 464, 666
PvuII CAGCTG 1 cut(s) 640
SacI GAGCTC 1 cut(s) 28
SapI GCTCTTC 1 cut(s) 45
SaqAI TTAA 4 cut(s) 387, 492, 813, 859
SatI GCNGC 2 cut(s) 222, 638
Sau96I GGNCC 2 cut(s) 464, 666
SchI GAGTC 4 cut(s) 494, 608, 624, 707
ScrFI CCNGG 3 cut(s) 109, 395, 740
SduI GDGCHC 3 cut(s) 28, 247, 549
SetI ASST 9 cut(s) 21, 28, 40, 378, 393, 428, 642, 772, 832
SfaNI GCATC 2 cut(s) 78, 241
SfcI CTRYAG 1 cut(s) 555
SfuI TTCGAA 1 cut(s) 380
SinI GGWCC 1 cut(s) 666
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
Sse9I AATT 5 cut(s) 75, 212, 261, 565, 670
SsiI CCGC 3 cut(s) 293, 776, 806
SspMI CTAG 3 cut(s) 92, 354, 444
SstI GAGCTC 1 cut(s) 28
StyD4I CCNGG 3 cut(s) 107, 393, 738
StyI CCWWGG 1 cut(s) 779
TaaI ACNGT 2 cut(s) 746, 801
TaqI TCGA 1 cut(s) 380
TasI AATT 5 cut(s) 75, 212, 261, 565, 670
TfiI GAWTC 2 cut(s) 382, 643
Tru1I TTAA 4 cut(s) 387, 492, 813, 859
Tru9I TTAA 4 cut(s) 387, 492, 813, 859
TscAI CASTG 5 cut(s) 201, 337, 487, 517, 766
TseI GCWGC 2 cut(s) 221, 637
TspDTI ATGAA 5 cut(s) 160, 417, 466, 603, 696
TspGWI ACGGA 1 cut(s) 133
TspRI CASTG 5 cut(s) 201, 337, 487, 517, 766
Vha464I CTTAAG 1 cut(s) 386
VpaK11BI GGWCC 1 cut(s) 666
XapI RAATTY 1 cut(s) 75
XspI CTAG 3 cut(s) 92, 354, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.