Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003152

Physical Location & Seq

Genomic Coordinates Forward (+)

3478336 .. 3481454

Gene Structure 3119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g04600.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGTCCCTAGCAAATATTATATCTCTAACTTTTCCACCACCCTATCCAAAAACACAGAGACAGCGCGAGAGAGTGGCAGTGAATTACACCCTCTTCCTTCCCTTAAGTAAACGACAACTTGTACTTTTTCGCTTCTTCTATCTTCTTCCTCTCTCTCTCACTCCGTCAATGGCGTCGACCAGTGCTTTAAGCTCCCGGCTTTCCAACTTCCACCGCCTCACCGACTCCCAGGAGCACCTCTCTTTCCGTGAAGTAGTAAACTCACATTCAGCATGTCCTTCAATTGTTTCTTGGCCTGGTGTTAAGACCGGGAGGGCATCCCGTTCCTCCCGTGTGTATGGCTTATTTGGAGGAGGAAAAAAGGATAACACTGAAAAGGGTGATGATGCAGCTTCAAAGGCCGGAATATTCGGTAATATGCAAAATCTGTATGAAACAGTTAAGAAAGCTCAAAATGTAGTACAAGTTGAAGCAGTGCGTGTGCAGAAAGAGCTTGCTGCGGCAGAGTTTGATGGTTACTGTGAAGGTGAGATAATAAAGGTAACCCTTTCTGGTAACCAGCAACCCGTACGCACTGAGATAACTGAGGCTGCTATGGAACTAGGAGCAGAAAAAGTCTCCGAATTGGTCACGGAAGCATACAAGGATGCGCATCAGAAGAGTGTCGTGGCCATGAAGGAGAGAATGAGCAACCTTGCCCAGAGTTTAGGAATGCCACCAGGCCTGGGGGAATCGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YbaB_DNA_bd

Protein Analysis

247

Amino Acids

27.06

Weight (kDa)

9.28

Isoelectric Point (pI)

41.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24020 AT2G24020 AT4G30620
fragaria_vesca	FvH4_2g41160
malus_domestica	MD08G1056000.v1.1 MD15G1041000.v1.1
prunus_persica	Prupe.1G394300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1
pyrus_communis	pycom08g04600
rosa_chinensis	RchiOBHm_Chr6g0299371
rosa_laevigata	RLG00000011438
rosa_multiflora	Rmu_sc0013965.1_g000001 Rmu_sc0017526.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168750
rosa_rugosa	Rorug06G0287600 Rorug06G0287600
rosa_samantha	Rh6AG399200 Rh6BG407600 Rh6CG413500
rosa_wichuraiana	Rw6G034950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	651
AccI	GTMKAC	1 cut(s)	176
AccII	CGCG	1 cut(s)	66
AciI	CCGC	2 cut(s)	214, 500
AcoI	YGGCCR	1 cut(s)	669
AcyI	GRCGYC	1 cut(s)	173
AfaI	GTAC	3 cut(s)	123, 462, 570
AfiI	CCNNNNNNNGG	1 cut(s)	725
AflII	CTTAAG	1 cut(s)	103
AgsI	TTSAA	3 cut(s)	282, 396, 470
AjnI	CCWGG	4 cut(s)	228, 295, 718, 723
AluBI	AGCT	4 cut(s)	192, 392, 449, 493
AluI	AGCT	4 cut(s)	192, 392, 449, 493
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	2 cut(s)	52, 622
AoxI	GGCC	4 cut(s)	293, 399, 669, 721
ApeKI	GCWGC	3 cut(s)	389, 497, 590
AspLEI	GCGC	2 cut(s)	66, 652
AsuC2I	CCSGG	2 cut(s)	196, 310
AsuHPI	GGTGA	3 cut(s)	211, 392, 539
BalI	TGGCCA	1 cut(s)	671
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	3 cut(s)	401, 484, 577
BccI	CCATC	1 cut(s)	506
BciT130I	CCWGG	4 cut(s)	230, 297, 720, 725
BcnI	CCSGG	2 cut(s)	196, 310
BcoDI	GTCTC	2 cut(s)	52, 622
BfaI	CTAG	2 cut(s)	8, 602
BfrI	CTTAAG	1 cut(s)	103
BisI	GCNGC	4 cut(s)	390, 498, 501, 591
BlsI	GCNGC	4 cut(s)	391, 499, 502, 592
Bme1390I	CCNGG	6 cut(s)	196, 230, 297, 310, 720, 725
BmrFI	CCNGG	6 cut(s)	196, 230, 297, 310, 720, 725
BmsI	GCATC	4 cut(s)	326, 376, 637, 661
BplI	GAGNNNNNCTC	2 cut(s)	224, 256
BpuMI	CCSGG	2 cut(s)	196, 310
BsaBI	GATNNNNATC	1 cut(s)	651
BsaHI	GRCGYC	1 cut(s)	173
BsaJI	CCNNGG	2 cut(s)	228, 724
Bsc4I	CCNNNNNNNGG	1 cut(s)	725
Bse1I	ACTGG	1 cut(s)	180
Bse8I	GATNNNNATC	1 cut(s)	651
BseBI	CCWGG	4 cut(s)	230, 297, 720, 725
BseDI	CCNNGG	2 cut(s)	228, 724
BseGI	GGATG	2 cut(s)	317, 652
BseJI	GATNNNNATC	1 cut(s)	651
BseLI	CCNNNNNNNGG	1 cut(s)	725
BseMII	CTCAG	2 cut(s)	567, 576
BseNI	ACTGG	1 cut(s)	180
BseRI	GAGGAG	1 cut(s)	366
BseXI	GCAGC	3 cut(s)	401, 484, 577
BsgI	GTGCAG	1 cut(s)	503
Bsh1236I	CGCG	1 cut(s)	66
BshFI	GGCC	4 cut(s)	295, 401, 671, 723
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	3 cut(s)	196, 309, 402
BsiWI	CGTACG	1 cut(s)	568
BslI	CCNNNNNNNGG	1 cut(s)	725
BsmAI	GTCTC	2 cut(s)	52, 622
BsmI	GAATGC	1 cut(s)	717
BsnI	GGCC	4 cut(s)	295, 401, 671, 723
Bsp1286I	GDGCHC	1 cut(s)	237
BspACI	CCGC	2 cut(s)	214, 500
BspANI	GGCC	4 cut(s)	295, 401, 671, 723
BspCNI	CTCAG	2 cut(s)	568, 577
BspFNI	CGCG	1 cut(s)	66
BspTI	CTTAAG	1 cut(s)	103
BsrI	ACTGG	1 cut(s)	180
BssECI	CCNNGG	2 cut(s)	228, 724
BssNI	GRCGYC	1 cut(s)	173
Bst2UI	CCWGG	4 cut(s)	230, 297, 720, 725
Bst4CI	ACNGT	2 cut(s)	439, 521
Bst6I	CTCTTC	2 cut(s)	98, 653
BstACI	GRCGYC	1 cut(s)	173
BstAFI	CTTAAG	1 cut(s)	103
BstC8I	GCNNGC	1 cut(s)	495
BstDEI	CTNAG	2 cut(s)	576, 585
BstEII	GGTNACC	2 cut(s)	541, 554
BstF5I	GGATG	2 cut(s)	317, 652
BstFNI	CGCG	1 cut(s)	66
BstHHI	GCGC	2 cut(s)	66, 652
BstMAI	GTCTC	2 cut(s)	52, 622
BstMWI	GCNNNNNNNGC	2 cut(s)	398, 490
BstNI	CCWGG	4 cut(s)	230, 297, 720, 725
BstNSI	RCATGY	1 cut(s)	276
BstPI	GGTNACC	2 cut(s)	541, 554
BstSCI	CCNGG	6 cut(s)	194, 228, 295, 308, 718, 723
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	3 cut(s)	401, 484, 577
BsuRI	GGCC	4 cut(s)	295, 401, 671, 723
BtsCI	GGATG	2 cut(s)	317, 652
BtsI	GCAGTG	2 cut(s)	84, 480
BtsIMutI	CAGTG	5 cut(s)	84, 187, 369, 480, 573
Cac8I	GCNNGC	1 cut(s)	495
CfoI	GCGC	2 cut(s)	66, 652
CseI	GACGC	1 cut(s)	162
Csp6I	GTAC	3 cut(s)	122, 461, 569
CviAII	CATG	2 cut(s)	273, 673
CviQI	GTAC	3 cut(s)	122, 461, 569
DdeI	CTNAG	2 cut(s)	576, 585
EaeI	YGGCCR	1 cut(s)	669
Eam1104I	CTCTTC	2 cut(s)	98, 653
EarI	CTCTTC	2 cut(s)	98, 653
Eco147I	AGGCCT	1 cut(s)	723
Eco91I	GGTNACC	2 cut(s)	541, 554
EcoO65I	GGTNACC	2 cut(s)	541, 554
EcoRII	CCWGG	4 cut(s)	228, 295, 718, 723
FaeI	CATG	2 cut(s)	276, 676
FaiI	YATR	8 cut(s)	20, 274, 339, 419, 432, 596, 640, 674
FatI	CATG	2 cut(s)	272, 672
FblI	GTMKAC	1 cut(s)	176
Fnu4HI	GCNGC	4 cut(s)	390, 498, 501, 591
FokI	GGATG	2 cut(s)	304, 659
Fsp4HI	GCNGC	4 cut(s)	390, 498, 501, 591
FspAI	RTGCGCAY	1 cut(s)	651
FspBI	CTAG	2 cut(s)	8, 602
FspI	TGCGCA	1 cut(s)	651
GlaI	GCGC	2 cut(s)	65, 651
GluI	GCNGC	4 cut(s)	390, 498, 501, 591
HaeIII	GGCC	4 cut(s)	295, 401, 671, 723
HapII	CCGG	3 cut(s)	196, 309, 402
HgaI	GACGC	1 cut(s)	162
HhaI	GCGC	2 cut(s)	66, 652
Hin1I	GRCGYC	1 cut(s)	173
Hin1II	CATG	2 cut(s)	276, 676
Hin6I	GCGC	2 cut(s)	64, 650
HinP1I	GCGC	2 cut(s)	64, 650
HincII	GTYRAC	1 cut(s)	177
HindII	GTYRAC	1 cut(s)	177
HinfI	GANTC	2 cut(s)	224, 731
HpaII	CCGG	3 cut(s)	196, 309, 402
HphI	GGTGA	3 cut(s)	211, 392, 539
Hpy166II	GTNNAC	3 cut(s)	110, 177, 259
Hpy188I	TCNGA	2 cut(s)	622, 657
Hpy8I	GTNNAC	3 cut(s)	110, 177, 259
Hpy99I	CGWCG	1 cut(s)	178
HpyAV	CCTTC	4 cut(s)	107, 288, 518, 670
HpyCH4III	ACNGT	2 cut(s)	439, 521
HpyCH4V	TGCA	3 cut(s)	389, 421, 484
HpyF10VI	GCNNNNNNNGC	2 cut(s)	398, 490
HpyF3I	CTNAG	2 cut(s)	576, 585
Hsp92I	GRCGYC	1 cut(s)	173
Hsp92II	CATG	2 cut(s)	276, 676
HspAI	GCGC	2 cut(s)	64, 650
LmnI	GCTCC	3 cut(s)	197, 232, 605
Lsp1109I	GCAGC	3 cut(s)	401, 484, 577
LweI	GCATC	4 cut(s)	326, 376, 637, 661
MaeI	CTAG	2 cut(s)	8, 602
MaeIII	GTNAC	4 cut(s)	515, 541, 554, 628
MboII	GAAGA	5 cut(s)	85, 127, 134, 137, 670
MfeI	CAATTG	1 cut(s)	282
MhlI	GDGCHC	1 cut(s)	237
MlsI	TGGCCA	1 cut(s)	671
MluCI	AATT	3 cut(s)	82, 282, 623
MluNI	TGGCCA	1 cut(s)	671
MlyI	GAGTC	1 cut(s)	218
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	9 cut(s)	101, 159, 227, 248, 306, 337, 344, 347, 580
Mox20I	TGGCCA	1 cut(s)	671
MscI	TGGCCA	1 cut(s)	671
MseI	TTAA	4 cut(s)	104, 188, 303, 441
Msp20I	TGGCCA	1 cut(s)	671
MspCI	CTTAAG	1 cut(s)	103
MspI	CCGG	3 cut(s)	196, 309, 402
MspR9I	CCNGG	6 cut(s)	196, 230, 297, 310, 720, 725
MunI	CAATTG	1 cut(s)	282
Mva1269I	GAATGC	1 cut(s)	717
MvaI	CCWGG	4 cut(s)	230, 297, 720, 725
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	2 cut(s)	398, 490
NciI	CCSGG	2 cut(s)	196, 310
NlaIII	CATG	2 cut(s)	276, 676
NmuCI	GTSAC	1 cut(s)	628
NsbI	TGCGCA	1 cut(s)	651
NspI	RCATGY	1 cut(s)	276
PceI	AGGCCT	1 cut(s)	723
PctI	GAATGC	1 cut(s)	717
PfeI	GAWTC	1 cut(s)	731
Pfl23II	CGTACG	1 cut(s)	568
PkrI	GCNGC	4 cut(s)	391, 499, 502, 592
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
Psp6I	CCWGG	4 cut(s)	228, 295, 718, 723
PspEI	GGTNACC	2 cut(s)	541, 554
PspGI	CCWGG	4 cut(s)	228, 295, 718, 723
PspLI	CGTACG	1 cut(s)	568
RsaI	GTAC	3 cut(s)	123, 462, 570
RsaNI	GTAC	3 cut(s)	122, 461, 569
SalI	GTCGAC	1 cut(s)	175
SaqAI	TTAA	4 cut(s)	104, 188, 303, 441
SatI	GCNGC	4 cut(s)	390, 498, 501, 591
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	6 cut(s)	196, 230, 297, 310, 720, 725
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	8 cut(s)	194, 240, 394, 451, 495, 529, 543, 696
SfaNI	GCATC	4 cut(s)	326, 376, 637, 661
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
Sse9I	AATT	3 cut(s)	82, 282, 623
SseBI	AGGCCT	1 cut(s)	723
SsiI	CCGC	2 cut(s)	214, 500
SspI	AATATT	2 cut(s)	16, 408
SspMI	CTAG	2 cut(s)	8, 602
StuI	AGGCCT	1 cut(s)	723
StyD4I	CCNGG	6 cut(s)	194, 228, 295, 308, 718, 723
TaaI	ACNGT	2 cut(s)	439, 521
TaqI	TCGA	2 cut(s)	176, 734
TasI	AATT	3 cut(s)	82, 282, 623
TatI	WGTACW	2 cut(s)	121, 460
TauI	GCSGC	1 cut(s)	503
TfiI	GAWTC	1 cut(s)	731
Tru1I	TTAA	4 cut(s)	104, 188, 303, 441
Tru9I	TTAA	4 cut(s)	104, 188, 303, 441
TscAI	CASTG	5 cut(s)	84, 187, 376, 480, 580
TseFI	GTSAC	1 cut(s)	628
TseI	GCWGC	3 cut(s)	389, 497, 590
Tsp45I	GTSAC	1 cut(s)	628
TspDTI	ATGAA	2 cut(s)	447, 689
TspGWI	ACGGA	3 cut(s)	153, 236, 647
TspRI	CASTG	5 cut(s)	84, 187, 376, 480, 580
Vha464I	CTTAAG	1 cut(s)	103
XceI	RCATGY	1 cut(s)	276
XmiI	GTMKAC	1 cut(s)	176
XspI	CTAG	2 cut(s)	8, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.