Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003152

Physical Location & Seq

Genomic Coordinates Reverse (-)

14948586 .. 14950072

Gene Structure 1487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G30620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCTTCGACGGCTACGAACACTGATTTCTTCAAGACTTTGCTTTCTCCTTTCTCAAATGGGAATGCGGCGCAACGAAGTAGTAGACAGAACATTGTTTGGTTAAATCGGAAGCAATCTGGAAATAATAACAGATCTCTTCGTGTTAATGGATTATTCGGAGGCGGAAAAAAGGACAATAAAGAGGATGGACAATCAAAGGCAGGAATTCTAGGTAACATGCAGAATTTGTATGAGACAGTGAAGAAAGCTCAAATGGTTGTTCAAGTAGAGGCTGTTAGAGTGCAGAAGGAGCTTGCTGTTGCTGAATTTGATGGTTATTGTCAAGGCGAGCTTGTCAAGGTTACATTATCAGGTAACCAGCAACCAATTCGCACTGATATCACTGATGCAGCAATGGAGTTAGGTTCTGAAAAACTTTCACTGCTGGTCACAGAAGCATACAAAGACGCACATTCAAAGAGTGTACTGGCTATGAAAGAAAGAATGAGTGATCTTGCGCAGAGCTTAGGGATGCCACCAGGCCTTGATGGATTAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YbaB_DNA_bd

Protein Analysis

180

Amino Acids

19.58

Weight (kDa)

9.19

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YbaB_DNA_bd	PF02575	82 - 169	1.1e-14	YbaB/EbfC DNA-binding family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24020 AT2G24020 AT4G30620
fragaria_vesca	FvH4_2g41160
malus_domestica	MD08G1056000.v1.1 MD15G1041000.v1.1
prunus_persica	Prupe.1G394300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1 Prupe.7G264300_v2.0.a1
pyrus_communis	pycom08g04600
rosa_chinensis	RchiOBHm_Chr6g0299371
rosa_laevigata	RLG00000011438
rosa_multiflora	Rmu_sc0013965.1_g000001 Rmu_sc0017526.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168750
rosa_rugosa	Rorug06G0287600 Rorug06G0287600
rosa_samantha	Rh6AG399200 Rh6BG407600 Rh6CG413500
rosa_wichuraiana	Rw6G034950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	501
AccI	GTMKAC	1 cut(s)	85
AciI	CCGC	2 cut(s)	68, 165
AcsI	RAATTY	3 cut(s)	207, 226, 308
AfaI	GTAC	1 cut(s)	468
AgsI	TTSAA	3 cut(s)	34, 266, 459
AjnI	CCWGG	1 cut(s)	520
AluBI	AGCT	4 cut(s)	251, 295, 334, 507
AluI	AGCT	4 cut(s)	251, 295, 334, 507
Alw26I	GTCTC	1 cut(s)	230
AoxI	GGCC	1 cut(s)	523
ApeKI	GCWGC	1 cut(s)	392
ApoI	RAATTY	3 cut(s)	207, 226, 308
AspLEI	GCGC	2 cut(s)	73, 502
BbvI	GCAGC	1 cut(s)	404
BccI	CCATC	3 cut(s)	182, 308, 524
BceAI	ACGGC	1 cut(s)	27
BcgI	CGANNNNNNTGC	2 cut(s)	353, 387
BciT130I	CCWGG	1 cut(s)	522
BcoDI	GTCTC	1 cut(s)	230
BfaI	CTAG	1 cut(s)	212
BglII	AGATCT	1 cut(s)	134
BisI	GCNGC	2 cut(s)	69, 393
BlsI	GCNGC	2 cut(s)	70, 394
Bme1390I	CCNGG	1 cut(s)	522
BmrFI	CCNGG	1 cut(s)	522
BmsI	GCATC	2 cut(s)	379, 504
Bpu10I	CCTNAGC	1 cut(s)	508
Bse1I	ACTGG	1 cut(s)	474
Bse3DI	GCAATG	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	522
BseGI	GGATG	2 cut(s)	193, 519
BseMI	GCAATG	1 cut(s)	402
BseNI	ACTGG	1 cut(s)	474
BseXI	GCAGC	1 cut(s)	404
BsgI	GTGCAG	1 cut(s)	305
BshFI	GGCC	1 cut(s)	525
BsmAI	GTCTC	1 cut(s)	230
BsmI	GAATGC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	525
Bsp143I	GATC	2 cut(s)	134, 493
BspACI	CCGC	2 cut(s)	68, 165
BspANI	GGCC	1 cut(s)	525
BsrDI	GCAATG	1 cut(s)	402
BsrI	ACTGG	1 cut(s)	474
BssMI	GATC	2 cut(s)	134, 493
Bst2UI	CCWGG	1 cut(s)	522
Bst4CI	ACNGT	1 cut(s)	241
Bst6I	CTCTTC	1 cut(s)	144
BstC8I	GCNNGC	2 cut(s)	297, 332
BstDEI	CTNAG	1 cut(s)	508
BstEII	GGTNACC	1 cut(s)	356
BstF5I	GGATG	2 cut(s)	193, 519
BstHHI	GCGC	2 cut(s)	73, 502
BstKTI	GATC	2 cut(s)	137, 496
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	2 cut(s)	134, 493
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 292
BstNI	CCWGG	1 cut(s)	522
BstNSI	RCATGY	1 cut(s)	223
BstPI	GGTNACC	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	520
BstV1I	GCAGC	1 cut(s)	404
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	525
BtsCI	GGATG	2 cut(s)	193, 519
BtsI	GCAGTG	1 cut(s)	422
BtsIMutI	CAGTG	5 cut(s)	21, 246, 375, 384, 422
Cac8I	GCNNGC	2 cut(s)	297, 332
CfoI	GCGC	2 cut(s)	73, 502
CseI	GACGC	1 cut(s)	458
Csp6I	GTAC	1 cut(s)	467
CviAII	CATG	1 cut(s)	220
CviJI	RGCY	9 cut(s)	5, 14, 251, 275, 295, 334, 473, 507, 525
CviKI_1	RGCY	9 cut(s)	5, 14, 251, 275, 295, 334, 473, 507, 525
CviQI	GTAC	1 cut(s)	467
DdeI	CTNAG	1 cut(s)	508
DpnI	GATC	2 cut(s)	136, 495
DpnII	GATC	2 cut(s)	134, 493
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
EciI	GGCGGA	1 cut(s)	180
Eco147I	AGGCCT	1 cut(s)	525
Eco32I	GATATC	1 cut(s)	382
Eco91I	GGTNACC	1 cut(s)	356
EcoO65I	GGTNACC	1 cut(s)	356
EcoRI	GAATTC	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	520
EcoRV	GATATC	1 cut(s)	382
FaeI	CATG	1 cut(s)	223
FaiI	YATR	4 cut(s)	221, 234, 442, 476
FalI	AAGNNNNNCTT	2 cut(s)	318, 350
FatI	CATG	1 cut(s)	219
FblI	GTMKAC	1 cut(s)	85
Fnu4HI	GCNGC	2 cut(s)	69, 393
FokI	GGATG	2 cut(s)	200, 526
Fsp4HI	GCNGC	2 cut(s)	69, 393
FspBI	CTAG	1 cut(s)	212
FspI	TGCGCA	1 cut(s)	501
GlaI	GCGC	2 cut(s)	72, 501
GluI	GCNGC	2 cut(s)	69, 393
HaeIII	GGCC	1 cut(s)	525
HgaI	GACGC	1 cut(s)	458
HhaI	GCGC	2 cut(s)	73, 502
Hin1II	CATG	1 cut(s)	223
Hin6I	GCGC	2 cut(s)	71, 500
HinP1I	GCGC	2 cut(s)	71, 500
Hpy166II	GTNNAC	2 cut(s)	86, 467
Hpy188I	TCNGA	3 cut(s)	111, 161, 412
Hpy188III	TCNNGA	2 cut(s)	34, 120
Hpy8I	GTNNAC	2 cut(s)	86, 467
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	1 cut(s)	283
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4V	TGCA	3 cut(s)	223, 286, 392
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 292
HpyF3I	CTNAG	1 cut(s)	508
Hsp92II	CATG	1 cut(s)	223
HspAI	GCGC	2 cut(s)	71, 500
Kzo9I	GATC	2 cut(s)	134, 493
LmnI	GCTCC	1 cut(s)	292
LpnPI	CCDG	8 cut(s)	105, 189, 339, 374, 413, 455, 507, 534
Lsp1109I	GCAGC	1 cut(s)	404
LweI	GCATC	2 cut(s)	379, 504
MaeI	CTAG	1 cut(s)	212
MaeIII	GTNAC	4 cut(s)	215, 343, 356, 430
MalI	GATC	2 cut(s)	136, 495
MboI	GATC	2 cut(s)	134, 493
MboII	GAAGA	3 cut(s)	22, 131, 256
MflI	RGATCY	1 cut(s)	134
MluCI	AATT	4 cut(s)	207, 226, 308, 369
MnlI	CCTC	3 cut(s)	155, 178, 265
MseI	TTAA	3 cut(s)	104, 147, 536
MspR9I	CCNGG	1 cut(s)	522
Mva1269I	GAATGC	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	522
MwoI	GCNNNNNNNGC	2 cut(s)	11, 292
NdeII	GATC	2 cut(s)	134, 493
NlaIII	CATG	1 cut(s)	223
NmuCI	GTSAC	1 cut(s)	430
NsbI	TGCGCA	1 cut(s)	501
NspI	RCATGY	1 cut(s)	223
PceI	AGGCCT	1 cut(s)	525
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PctI	GAATGC	1 cut(s)	70
PkrI	GCNGC	2 cut(s)	70, 394
Psp6I	CCWGG	1 cut(s)	520
PspEI	GGTNACC	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	520
PsuI	RGATCY	1 cut(s)	134
RsaI	GTAC	1 cut(s)	468
RsaNI	GTAC	1 cut(s)	467
SaqAI	TTAA	3 cut(s)	104, 147, 536
SatI	GCNGC	2 cut(s)	69, 393
Sau3AI	GATC	2 cut(s)	134, 493
ScrFI	CCNGG	1 cut(s)	522
SetI	ASST	8 cut(s)	217, 253, 297, 336, 345, 358, 409, 509
SfaNI	GCATC	2 cut(s)	379, 504
Sse9I	AATT	4 cut(s)	207, 226, 308, 369
SseBI	AGGCCT	1 cut(s)	525
SsiI	CCGC	2 cut(s)	68, 165
SspMI	CTAG	1 cut(s)	212
StuI	AGGCCT	1 cut(s)	525
StyD4I	CCNGG	1 cut(s)	520
TaaI	ACNGT	1 cut(s)	241
TaqI	TCGA	1 cut(s)	8
TasI	AATT	4 cut(s)	207, 226, 308, 369
TatI	WGTACW	1 cut(s)	466
TauI	GCSGC	1 cut(s)	71
Tru1I	TTAA	3 cut(s)	104, 147, 536
Tru9I	TTAA	3 cut(s)	104, 147, 536
TscAI	CASTG	5 cut(s)	28, 246, 382, 391, 429
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	1 cut(s)	392
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	1 cut(s)	491
TspRI	CASTG	5 cut(s)	28, 246, 382, 391, 429
XapI	RAATTY	3 cut(s)	207, 226, 308
XceI	RCATGY	1 cut(s)	223
XmiI	GTMKAC	1 cut(s)	85
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.