Prupe.7G264300_v2.0.a1

YbaB/EbfC DNA-binding family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0003152
Physical Location & Seq
Reverse (-)
21861604 .. 21865860
4257 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G264300.2

Sequence Viewer

Length: 585 bp
ATGGCGTCGACGATTTCTCTGATTGGCCAGATATCGAGCCCACATGGACTTGGACTTGACGTCTCCCAAAGACCCAGCACCCCCTTCTCACTCTCCCGCTATAACTTAAGTTCAAAGACAAATTTACAGAGCTTATCTCATTCTGGTTACCGACACTTTGGGCATATTCAGAGATCTGTCCTTGTTAATGGTCTTTTTGGCGGAAAGAAAGAAAATAATGAGAACAGTGATGATGCGCCTTCAAAGGCAGGAGTTCTTGGAAACATGCAAAATCTATATGAGACTGTGAAGAAGGCACAAATGGTTGTCCAAGTTGAAGCAGTGCGGGTGCAAAAAGAACTTGCTGTAGAAGAGTTTGATGGTTACTGCGAAGGGGAGTTAATAAAGGTTACTCTGTCTGGGAACCAGCAACCCGTTCGCACGGAGATTACTGAGGCTGCAATGGAATTAGGACCAGAAAAACTTTCGCTTTTAATTACTGAGGCATACAAGGATGCACACCAGAAGAGTGTCCAGGCTATGAAGGAAAGGATGAGCAATCTTGCCCAGAGTTTAGGAATGCCGCAAGGACTCACTCCTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YbaB_DNA_bd

Protein Analysis

195

Amino Acids

21.17

Weight (kDa)

6.52

Isoelectric Point (pI)

40.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 63
AccI GTMKAC 1 cut(s) 8
AciI CCGC 4 cut(s) 97, 201, 325, 563
AcoI YGGCCR 1 cut(s) 25
AcsI RAATTY 1 cut(s) 121
AcyI GRCGYC 2 cut(s) 5, 60
AflII CTTAAG 1 cut(s) 106
AgsI TTSAA 3 cut(s) 114, 243, 317
AhdI GACNNNNNGTC 1 cut(s) 59
AjnI CCWGG 1 cut(s) 513
AluBI AGCT 1 cut(s) 132
AluI AGCT 1 cut(s) 132
Alw26I GTCTC 2 cut(s) 67, 275
AoxI GGCC 1 cut(s) 25
ApeKI GCWGC 1 cut(s) 437
ApoI RAATTY 1 cut(s) 121
AspLEI GCGC 1 cut(s) 238
AspS9I GGNCC 1 cut(s) 452
AvaII GGWCC 1 cut(s) 452
BalI TGGCCA 1 cut(s) 27
BanII GRGCYC 1 cut(s) 41
BbvI GCAGC 1 cut(s) 424
BccI CCATC 1 cut(s) 353
BcgI CGANNNNNNTGC 2 cut(s) 398, 432
BciT130I CCWGG 1 cut(s) 515
BcoDI GTCTC 2 cut(s) 67, 275
BfmI CTRYAG 1 cut(s) 345
BfrI CTTAAG 1 cut(s) 106
BglII AGATCT 1 cut(s) 173
BisI GCNGC 2 cut(s) 438, 563
BlsI GCNGC 2 cut(s) 439, 564
Bme1390I CCNGG 1 cut(s) 515
Bme18I GGWCC 1 cut(s) 452
BmeRI GACNNNNNGTC 1 cut(s) 59
BmgT120I GGNCC 1 cut(s) 452
BmiI GGNNCC 1 cut(s) 404
BmrFI CCNGG 1 cut(s) 515
BmsI GCATC 2 cut(s) 223, 484
BplI GAGNNNNNCTC 2 cut(s) 121, 153
BsaHI GRCGYC 2 cut(s) 5, 60
Bse3DI GCAATG 1 cut(s) 447
BseBI CCWGG 1 cut(s) 515
BseGI GGATG 2 cut(s) 499, 537
BseMI GCAATG 1 cut(s) 447
BseMII CTCAG 2 cut(s) 423, 471
BseRI GAGGAG 1 cut(s) 567
BseXI GCAGC 1 cut(s) 424
BseYI CCCAGC 1 cut(s) 74
BshFI GGCC 1 cut(s) 27
BsmAI GTCTC 2 cut(s) 67, 275
BsmBI CGTCTC 1 cut(s) 67
BsmI GAATGC 1 cut(s) 564
BsnI GGCC 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 1 cut(s) 173
BspACI CCGC 4 cut(s) 97, 201, 325, 563
BspANI GGCC 1 cut(s) 27
BspCNI CTCAG 2 cut(s) 424, 472
BspLI GGNNCC 1 cut(s) 404
BspTI CTTAAG 1 cut(s) 106
BsrDI GCAATG 1 cut(s) 447
BssMI GATC 1 cut(s) 173
BssNI GRCGYC 2 cut(s) 5, 60
Bst2UI CCWGG 1 cut(s) 515
Bst4CI ACNGT 2 cut(s) 227, 286
Bst6I CTCTTC 2 cut(s) 345, 500
BstACI GRCGYC 2 cut(s) 5, 60
BstAFI CTTAAG 1 cut(s) 106
BstDEI CTNAG 3 cut(s) 432, 480, 579
BstEII GGTNACC 1 cut(s) 146
BstF5I GGATG 2 cut(s) 499, 537
BstHHI GCGC 1 cut(s) 238
BstKTI GATC 1 cut(s) 176
BstMAI GTCTC 2 cut(s) 67, 275
BstMBI GATC 1 cut(s) 173
BstNI CCWGG 1 cut(s) 515
BstNSI RCATGY 1 cut(s) 268
BstPI GGTNACC 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 513
BstSFI CTRYAG 1 cut(s) 345
BstV1I GCAGC 1 cut(s) 424
BstX2I RGATCY 1 cut(s) 173
BstYI RGATCY 1 cut(s) 173
BsuRI GGCC 1 cut(s) 27
BtsCI GGATG 2 cut(s) 499, 537
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 2 cut(s) 232, 327
CfoI GCGC 1 cut(s) 238
Cfr13I GGNCC 1 cut(s) 452
CviAII CATG 2 cut(s) 44, 265
CviJI RGCY 5 cut(s) 27, 39, 132, 437, 518
CviKI_1 RGCY 5 cut(s) 27, 39, 132, 437, 518
DdeI CTNAG 3 cut(s) 432, 480, 579
DpnI GATC 1 cut(s) 175
DpnII GATC 1 cut(s) 173
DriI GACNNNNNGTC 1 cut(s) 59
EaeI YGGCCR 1 cut(s) 25
Eam1104I CTCTTC 2 cut(s) 345, 500
Eam1105I GACNNNNNGTC 1 cut(s) 59
EarI CTCTTC 2 cut(s) 345, 500
EciI GGCGGA 1 cut(s) 216
Eco24I GRGCYC 1 cut(s) 41
Eco32I GATATC 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 452
Eco91I GGTNACC 1 cut(s) 146
EcoO65I GGTNACC 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 513
EcoRV GATATC 1 cut(s) 33
EcoT38I GRGCYC 1 cut(s) 41
Esp3I CGTCTC 1 cut(s) 67
FaeI CATG 2 cut(s) 47, 268
FaiI YATR 8 cut(s) 45, 102, 165, 266, 277, 279, 487, 521
FatI CATG 2 cut(s) 43, 264
FauI CCCGC 2 cut(s) 104, 318
FblI GTMKAC 1 cut(s) 8
Fnu4HI GCNGC 2 cut(s) 438, 563
FokI GGATG 2 cut(s) 506, 544
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 2 cut(s) 438, 563
GlaI GCGC 1 cut(s) 237
GluI GCNGC 2 cut(s) 438, 563
GsaI CCCAGC 1 cut(s) 78
HaeIII GGCC 1 cut(s) 27
HhaI GCGC 1 cut(s) 238
Hin1I GRCGYC 2 cut(s) 5, 60
Hin1II CATG 2 cut(s) 47, 268
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HinfI GANTC 1 cut(s) 570
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 2 cut(s) 21, 171
Hpy8I GTNNAC 1 cut(s) 9
Hpy99I CGWCG 2 cut(s) 10, 13
HpyAV CCTTC 5 cut(s) 94, 249, 286, 365, 517
HpyCH4III ACNGT 2 cut(s) 227, 286
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 4 cut(s) 268, 331, 440, 497
HpyF3I CTNAG 3 cut(s) 432, 480, 579
HpySE526I ACGT 1 cut(s) 60
Hsp92I GRCGYC 2 cut(s) 5, 60
Hsp92II CATG 2 cut(s) 47, 268
HspAI GCGC 1 cut(s) 236
Kzo9I GATC 1 cut(s) 173
Lsp1109I GCAGC 1 cut(s) 424
LweI GCATC 2 cut(s) 223, 484
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 3 cut(s) 146, 362, 388
MalI GATC 1 cut(s) 175
MboI GATC 1 cut(s) 173
MboII GAAGA 3 cut(s) 301, 362, 517
MflI RGATCY 1 cut(s) 173
MhlI GDGCHC 1 cut(s) 41
MlsI TGGCCA 1 cut(s) 27
MluCI AATT 3 cut(s) 121, 446, 474
MluNI TGGCCA 1 cut(s) 27
MlyI GAGTC 1 cut(s) 564
MnlI CCTC 2 cut(s) 427, 475
Mox20I TGGCCA 1 cut(s) 27
MscI TGGCCA 1 cut(s) 27
MseI TTAA 4 cut(s) 107, 186, 380, 473
Msp20I TGGCCA 1 cut(s) 27
MspCI CTTAAG 1 cut(s) 106
MspR9I CCNGG 1 cut(s) 515
Mva1269I GAATGC 1 cut(s) 564
MvaI CCWGG 1 cut(s) 515
NdeII GATC 1 cut(s) 173
NlaIII CATG 2 cut(s) 47, 268
NlaIV GGNNCC 1 cut(s) 404
NspI RCATGY 1 cut(s) 268
PctI GAATGC 1 cut(s) 564
PkrI GCNGC 2 cut(s) 439, 564
PleI GAGTC 1 cut(s) 564
PpsI GAGTC 1 cut(s) 564
Psp6I CCWGG 1 cut(s) 513
PspEI GGTNACC 1 cut(s) 146
PspFI CCCAGC 1 cut(s) 74
PspGI CCWGG 1 cut(s) 513
PspN4I GGNNCC 1 cut(s) 404
PspPI GGNCC 1 cut(s) 452
PsuI RGATCY 1 cut(s) 173
SalI GTCGAC 1 cut(s) 7
SaqAI TTAA 4 cut(s) 107, 186, 380, 473
SatI GCNGC 2 cut(s) 438, 563
Sau3AI GATC 1 cut(s) 173
Sau96I GGNCC 1 cut(s) 452
SchI GAGTC 1 cut(s) 564
ScrFI CCNGG 1 cut(s) 515
SduI GDGCHC 1 cut(s) 41
SetI ASST 3 cut(s) 63, 134, 390
SfaNI GCATC 2 cut(s) 223, 484
SfcI CTRYAG 1 cut(s) 345
SgrDI CGTCGACG 1 cut(s) 7
SinI GGWCC 1 cut(s) 452
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
Sse9I AATT 3 cut(s) 121, 446, 474
SsiI CCGC 4 cut(s) 97, 201, 325, 563
StyD4I CCNGG 1 cut(s) 513
TaaI ACNGT 2 cut(s) 227, 286
TaiI ACGT 1 cut(s) 63
TaqI TCGA 2 cut(s) 8, 35
TasI AATT 3 cut(s) 121, 446, 474
TauI GCSGC 1 cut(s) 565
Tru1I TTAA 4 cut(s) 107, 186, 380, 473
Tru9I TTAA 4 cut(s) 107, 186, 380, 473
TscAI CASTG 2 cut(s) 232, 327
TseI GCWGC 1 cut(s) 437
TspDTI ATGAA 1 cut(s) 536
TspGWI ACGGA 1 cut(s) 437
TspRI CASTG 2 cut(s) 232, 327
Vha464I CTTAAG 1 cut(s) 106
VpaK11BI GGWCC 1 cut(s) 452
XapI RAATTY 1 cut(s) 121
XceI RCATGY 1 cut(s) 268
XmiI GTMKAC 1 cut(s) 8
ZraI GACGTC 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.