AT2G24430

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0009403
Physical Location & Seq
Reverse (-)
10383497 .. 10386625
3129 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G24430.2

Sequence Viewer

Length: 951 bp
ATGGAACAAGGAGATCATCAGCAGCATAAGAAAGAAGAAGAAGCTTTGCCACCGGGTTTCAGATTTCATCCGACGGATGAGGAGCTAATCTCATATTACTTGGTTAATAAGATTGCCGATCAAAACTTCACCGGGAAAGCAATCGCTGACGTTGATCTTAACAAGTCCGAGCCATGGGAGCTTCCTGAGAAGGCGAAAATGGGAGGAAAAGAATGGTACTTTTTTAGCCTCCGGGACCGGAAGTACCCGACGGGAGTGAGGACGAATAGGGCGACGAATACAGGATATTGGAAAACCACAGGAAAAGACAAAGAGATATTCAATAGCACAACCTCGGAGTTGGTCGGGATGAAGAAGACTTTGGTCTTTTACAGAGGACGAGCTCCTCGTGGGGAGAAGACTTGTTGGGTCATGCATGAGTATCGACTTCACTCCAAGTCCTCATATAGAACCTCCAAGCAAGACGAGTGGGTAGTGTGTAGAGTGTTCAAGAAAACAGAAGCAACCAAGAAATACATAAGCACCAGTAGCAGCAGCACAAGTCATCACCACAACAACCACACAAGAGCCTCAATACTATCAACCAACAACAATAATCCTAATTACTCATCAGACCTCCTTCAACTCCCACCGCATCTACAACCACACCCGAGCCTCAATATTAACCAATCCCTCATGGCAAACGCCGTTCACCTAGCTGAGCTCTCAAGAGTCTTCCGTGCCTCTACAAGCACCACCATGGACTCTTCTCATCAGCAGCTAATGAACTACACCCACATGCCTGTCTCAGGGCTCAACCTCAACCTTGGCGGTGCACTGGTCCAGCCGCCTCCTGTTGTGTCTCTTGAGGATGTTGCCGCGGTTAGTGCTTCGTACAATGGCGAAAACGGGTTTGGAAATGTGGAGATGAGCCAGTGCATGGACTTGGATGGATACTGGCCATCTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

316

Amino Acids

35.84

Weight (kDa)

8.27

Isoelectric Point (pI)

38.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 17 - 143 2.1e-49 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 919
AccII CGCG 1 cut(s) 860
AciI CCGC 5 cut(s) 632, 810, 827, 858, 860
AcoI YGGCCR 1 cut(s) 938
AfaI GTAC 3 cut(s) 218, 245, 875
AfiI CCNNNNNNNGG 3 cut(s) 174, 788, 919
AgsI TTSAA 3 cut(s) 322, 490, 623
AjuI GAANNNNNNNTTGG 4 cut(s) 344, 376, 876, 908
AluBI AGCT 7 cut(s) 44, 85, 181, 383, 698, 703, 760
AluI AGCT 7 cut(s) 44, 85, 181, 383, 698, 703, 760
Alw21I GWGCWC 3 cut(s) 385, 705, 817
Alw26I GTCTC 2 cut(s) 790, 846
Alw44I GTGCAC 1 cut(s) 813
Ama87I CYCGRG 1 cut(s) 649
AoxI GGCC 1 cut(s) 938
ApaLI GTGCAC 1 cut(s) 813
ApeKI GCWGC 4 cut(s) 22, 531, 534, 757
AspS9I GGNCC 2 cut(s) 235, 820
AsuC2I CCSGG 3 cut(s) 54, 133, 233
AsuHPI GGTGA 3 cut(s) 121, 539, 683
AvaI CYCGRG 1 cut(s) 649
AvaII GGWCC 2 cut(s) 235, 820
BaeGI GKGCMC 1 cut(s) 817
BalI TGGCCA 1 cut(s) 940
BanII GRGCYC 3 cut(s) 385, 705, 795
BauI CACGAG 1 cut(s) 387
BbsI GAAGAC 3 cut(s) 362, 404, 706
Bbv12I GWGCWC 3 cut(s) 385, 705, 817
BbvI GCAGC 4 cut(s) 34, 543, 546, 769
BccI CCATC 2 cut(s) 923, 949
BceAI ACGGC 1 cut(s) 671
BcgI CGANNNNNNTGC 2 cut(s) 404, 438
BciVI GTATCC 1 cut(s) 926
BcnI CCSGG 3 cut(s) 54, 133, 233
BcoDI GTCTC 2 cut(s) 790, 846
BfaI CTAG 1 cut(s) 695
BfuI GTATCC 1 cut(s) 926
BisI GCNGC 6 cut(s) 23, 532, 535, 758, 827, 858
BlpI GCTNAGC 1 cut(s) 699
BlsI GCNGC 6 cut(s) 24, 533, 536, 759, 828, 859
Bme1390I CCNGG 3 cut(s) 54, 133, 233
Bme18I GGWCC 2 cut(s) 235, 820
BmeT110I CYCGRG 1 cut(s) 649
BmgT120I GGNCC 2 cut(s) 235, 820
BmiI GGNNCC 1 cut(s) 236
BmrFI CCNGG 3 cut(s) 54, 133, 233
BmsI GCATC 1 cut(s) 643
BoxI GACNNNNGTC 1 cut(s) 362
BpiI GAAGAC 3 cut(s) 362, 404, 706
BplI GAGNNNNNCTC 2 cut(s) 74, 106
Bpu1102I GCTNAGC 1 cut(s) 699
BpuEI CTTGAG 2 cut(s) 691, 866
BpuMI CCSGG 3 cut(s) 54, 133, 233
BsaJI CCNNGG 5 cut(s) 173, 333, 738, 805, 858
BsaWI WCCGGW 1 cut(s) 237
Bsc4I CCNNNNNNNGG 3 cut(s) 174, 788, 919
Bse1I ACTGG 4 cut(s) 525, 822, 913, 941
BseDI CCNNGG 5 cut(s) 173, 333, 738, 805, 858
BseGI GGATG 5 cut(s) 67, 82, 354, 856, 934
BseLI CCNNNNNNNGG 3 cut(s) 174, 788, 919
BseMII CTCAG 3 cut(s) 177, 690, 801
BseNI ACTGG 4 cut(s) 525, 822, 913, 941
BseRI GAGGAG 2 cut(s) 95, 375
BseSI GKGCMC 1 cut(s) 817
BseXI GCAGC 4 cut(s) 34, 543, 546, 769
Bsh1236I CGCG 1 cut(s) 860
BshFI GGCC 1 cut(s) 940
BsiHKAI GWGCWC 3 cut(s) 385, 705, 817
BsiHKCI CYCGRG 1 cut(s) 649
BsiSI CCGG 4 cut(s) 53, 132, 232, 238
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 3 cut(s) 174, 788, 919
BsmAI GTCTC 2 cut(s) 790, 846
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 1 cut(s) 940
BsoBI CYCGRG 1 cut(s) 649
Bsp1286I GDGCHC 4 cut(s) 385, 705, 795, 817
Bsp143I GATC 3 cut(s) 13, 118, 154
Bsp1720I GCTNAGC 1 cut(s) 699
Bsp19I CCATGG 2 cut(s) 173, 738
BspACI CCGC 5 cut(s) 632, 810, 827, 858, 860
BspANI GGCC 1 cut(s) 940
BspCNI CTCAG 3 cut(s) 178, 691, 800
BspFNI CGCG 1 cut(s) 860
BspLI GGNNCC 1 cut(s) 236
BsrI ACTGG 4 cut(s) 525, 822, 913, 941
BssECI CCNNGG 5 cut(s) 173, 333, 738, 805, 858
BssMI GATC 3 cut(s) 13, 118, 154
BssSI CACGAG 1 cut(s) 387
BssT1I CCWWGG 3 cut(s) 173, 738, 805
Bst2BI CACGAG 1 cut(s) 387
Bst6I CTCTTC 1 cut(s) 751
BstDEI CTNAG 3 cut(s) 186, 699, 787
BstDSI CCRYGG 3 cut(s) 173, 738, 858
BstENI CCTNNNNNAGG 1 cut(s) 786
BstF5I GGATG 5 cut(s) 67, 82, 354, 856, 934
BstFNI CGCG 1 cut(s) 860
BstKTI GATC 3 cut(s) 16, 121, 157
BstMAI GTCTC 2 cut(s) 790, 846
BstMBI GATC 3 cut(s) 13, 118, 154
BstMWI GCNNNNNNNGC 3 cut(s) 178, 528, 866
BstNSI RCATGY 1 cut(s) 781
BstPAI GACNNNNGTC 1 cut(s) 362
BstSCI CCNGG 3 cut(s) 52, 131, 231
BstSLI GKGCMC 1 cut(s) 817
BstUI CGCG 1 cut(s) 860
BstV1I GCAGC 4 cut(s) 34, 543, 546, 769
BstV2I GAAGAC 3 cut(s) 362, 404, 706
BsuI GTATCC 1 cut(s) 926
BsuRI GGCC 1 cut(s) 940
BtgI CCRYGG 3 cut(s) 173, 738, 858
BtsCI GGATG 5 cut(s) 67, 82, 354, 856, 934
BtsIMutI CAGTG 2 cut(s) 815, 920
Cfr13I GGNCC 2 cut(s) 235, 820
Cfr42I CCGCGG 1 cut(s) 861
Csp6I GTAC 3 cut(s) 217, 244, 874
CspCI CAANNNNNGTGG 2 cut(s) 449, 484
CviAII CATG 7 cut(s) 174, 412, 416, 676, 739, 778, 919
CviQI GTAC 3 cut(s) 217, 244, 874
DdeI CTNAG 3 cut(s) 186, 699, 787
DpnI GATC 3 cut(s) 15, 120, 156
DpnII GATC 3 cut(s) 13, 118, 154
EaeI YGGCCR 1 cut(s) 938
Eam1104I CTCTTC 1 cut(s) 751
EarI CTCTTC 1 cut(s) 751
Ecl136II GAGCTC 2 cut(s) 383, 703
Eco130I CCWWGG 3 cut(s) 173, 738, 805
Eco24I GRGCYC 3 cut(s) 385, 705, 795
Eco47I GGWCC 2 cut(s) 235, 820
Eco53kI GAGCTC 2 cut(s) 383, 703
Eco88I CYCGRG 1 cut(s) 649
EcoICRI GAGCTC 2 cut(s) 383, 703
EcoNI CCTNNNNNAGG 1 cut(s) 786
EcoT14I CCWWGG 3 cut(s) 173, 738, 805
EcoT22I ATGCAT 1 cut(s) 417
EcoT38I GRGCYC 3 cut(s) 385, 705, 795
ErhI CCWWGG 3 cut(s) 173, 738, 805
FaeI CATG 7 cut(s) 177, 415, 419, 679, 742, 781, 922
FaqI GGGAC 1 cut(s) 248
FatI CATG 7 cut(s) 173, 411, 415, 675, 738, 777, 918
Fnu4HI GCNGC 6 cut(s) 23, 532, 535, 758, 827, 858
FokI GGATG 5 cut(s) 54, 89, 361, 863, 941
FriOI GRGCYC 3 cut(s) 385, 705, 795
Fsp4HI GCNGC 6 cut(s) 23, 532, 535, 758, 827, 858
FspBI CTAG 1 cut(s) 695
GluI GCNGC 6 cut(s) 23, 532, 535, 758, 827, 858
HaeIII GGCC 1 cut(s) 940
HapII CCGG 4 cut(s) 53, 132, 232, 238
Hin1II CATG 7 cut(s) 177, 415, 419, 679, 742, 781, 922
HindIII AAGCTT 1 cut(s) 42
HinfI GANTC 2 cut(s) 711, 743
HpaII CCGG 4 cut(s) 53, 132, 232, 238
HphI GGTGA 3 cut(s) 121, 539, 683
Hpy166II GTNNAC 2 cut(s) 691, 815
Hpy188I TCNGA 5 cut(s) 62, 72, 169, 337, 613
Hpy188III TCNNGA 5 cut(s) 185, 346, 490, 708, 845
Hpy8I GTNNAC 2 cut(s) 691, 815
Hpy99I CGWCG 3 cut(s) 76, 253, 277
HpyAV CCTTC 2 cut(s) 184, 629
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 3 cut(s) 415, 815, 918
HpyF10VI GCNNNNNNNGC 3 cut(s) 178, 528, 866
HpyF3I CTNAG 3 cut(s) 186, 699, 787
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 7 cut(s) 177, 415, 419, 679, 742, 781, 922
KspI CCGCGG 1 cut(s) 861
Kzo9I GATC 3 cut(s) 13, 118, 154
LmnI GCTCC 3 cut(s) 82, 178, 388
Lsp1109I GCAGC 4 cut(s) 34, 543, 546, 769
LweI GCATC 1 cut(s) 643
MaeI CTAG 1 cut(s) 695
MaeII ACGT 1 cut(s) 150
MalI GATC 3 cut(s) 15, 120, 156
MboI GATC 3 cut(s) 13, 118, 154
MboII GAAGA 7 cut(s) 47, 50, 364, 367, 409, 706, 738
MhlI GDGCHC 4 cut(s) 385, 705, 795, 817
MlsI TGGCCA 1 cut(s) 940
MluCI AATT 1 cut(s) 601
MluNI TGGCCA 1 cut(s) 940
MlyI GAGTC 2 cut(s) 720, 737
MmeI TCCRAC 1 cut(s) 95
Mox20I TGGCCA 1 cut(s) 940
Mph1103I ATGCAT 1 cut(s) 417
MscI TGGCCA 1 cut(s) 940
MseI TTAA 3 cut(s) 105, 159, 663
MslI CAYNNNNRTG 2 cut(s) 737, 776
Msp20I TGGCCA 1 cut(s) 940
MspA1I CMGCKG 1 cut(s) 860
MspI CCGG 4 cut(s) 53, 132, 232, 238
MspR9I CCNGG 3 cut(s) 54, 133, 233
MvnI CGCG 1 cut(s) 860
MwoI GCNNNNNNNGC 3 cut(s) 178, 528, 866
NciI CCSGG 3 cut(s) 54, 133, 233
NcoI CCATGG 2 cut(s) 173, 738
NdeII GATC 3 cut(s) 13, 118, 154
NlaIII CATG 7 cut(s) 177, 415, 419, 679, 742, 781, 922
NlaIV GGNNCC 1 cut(s) 236
NsiI ATGCAT 1 cut(s) 417
NspI RCATGY 1 cut(s) 781
PcsI WCGNNNNNNNCGW 2 cut(s) 269, 385
PflMI CCANNNNNTGG 1 cut(s) 919
PfoI TCCNGGA 1 cut(s) 231
PkrI GCNGC 6 cut(s) 24, 533, 536, 759, 828, 859
PleI GAGTC 2 cut(s) 719, 737
PpsI GAGTC 2 cut(s) 719, 737
PshAI GACNNNNGTC 1 cut(s) 362
Psp124BI GAGCTC 2 cut(s) 385, 705
PspN4I GGNNCC 1 cut(s) 236
PspPI GGNCC 2 cut(s) 235, 820
RsaI GTAC 3 cut(s) 218, 245, 875
RsaNI GTAC 3 cut(s) 217, 244, 874
RseI CAYNNNNRTG 2 cut(s) 737, 776
SacI GAGCTC 2 cut(s) 385, 705
SacII CCGCGG 1 cut(s) 861
SaqAI TTAA 3 cut(s) 105, 159, 663
SatI GCNGC 6 cut(s) 23, 532, 535, 758, 827, 858
Sau3AI GATC 3 cut(s) 13, 118, 154
Sau96I GGNCC 2 cut(s) 235, 820
SchI GAGTC 2 cut(s) 720, 737
ScrFI CCNGG 3 cut(s) 54, 133, 233
SduI GDGCHC 4 cut(s) 385, 705, 795, 817
SfaNI GCATC 1 cut(s) 643
Sfr303I CCGCGG 1 cut(s) 861
SgrBI CCGCGG 1 cut(s) 861
SinI GGWCC 2 cut(s) 235, 820
SmiMI CAYNNNNRTG 2 cut(s) 737, 776
SmlI CTYRAG 2 cut(s) 706, 845
SmoI CTYRAG 2 cut(s) 706, 845
Sse9I AATT 1 cut(s) 601
SsiI CCGC 5 cut(s) 632, 810, 827, 858, 860
SspI AATATT 1 cut(s) 661
SspMI CTAG 1 cut(s) 695
SstI GAGCTC 2 cut(s) 385, 705
StyD4I CCNGG 3 cut(s) 52, 131, 231
StyI CCWWGG 3 cut(s) 173, 738, 805
TaiI ACGT 1 cut(s) 153
TaqI TCGA 1 cut(s) 424
TasI AATT 1 cut(s) 601
TauI GCSGC 2 cut(s) 829, 860
Tru1I TTAA 3 cut(s) 105, 159, 663
Tru9I TTAA 3 cut(s) 105, 159, 663
TscAI CASTG 2 cut(s) 822, 920
TseI GCWGC 4 cut(s) 22, 531, 534, 757
TspDTI ATGAA 3 cut(s) 56, 365, 779
TspGWI ACGGA 2 cut(s) 89, 707
TspRI CASTG 2 cut(s) 822, 920
Van91I CCANNNNNTGG 1 cut(s) 919
VneI GTGCAC 1 cut(s) 813
VpaK11BI GGWCC 2 cut(s) 235, 820
XagI CCTNNNNNAGG 1 cut(s) 786
XceI RCATGY 1 cut(s) 781
XspI CTAG 1 cut(s) 695
Zsp2I ATGCAT 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.