Rorug06G0341400
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0009403
Physical Location & Seq
Forward (+)
49193353 .. 49194051
699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0341400.1

Sequence Viewer

Length: 699 bp
ATGGTTGAACCCAATGTGAAAGAGTGCATGGAAGAGCTGTTGAAGTTCACCCTTGAATCTCACATAAAGGGTACCCTGGTTATCGATCTAGCCTTGCCCACTGACTTCTGCCTCCTCAACAACCCGAAAATAGGCACCAATTCTACAGAGGGAGAACCCCCATATCCTTTATACAAGCAACTAGCACTAGCCCTATATGAATCCATCAATTCTAATGCATTTTCAGGGACACATAGTTGGGATCAGAGTTCACAATTACTAGACACTCTCAAGTCTGTGGACTTTGAACTCCATGTTCAGGAGCCCTTTTTCACACAAATCAAAGACGGCCTAAAGACAGTCGAAGGAAGGTGCAACGTTGGTAACTATAGTCGAATCGGATCAGGAGCACTGATCCTCTTCAACAAATGCCTGATTGTCGAGGTTAAGGAAGTCCGATCGTATGATTCGTTCTCTGATATGCTGAAGGCAGAGAGCCTAGAGAAAGGTCTCCCTGGTGTGAAAACCATTGAAGATGGTGTTCAAGTCTACAGAAGATTCTACACTAAAGAAATTGAAAGGTCCAATGGTGTCATTGCCATATGCATTGAAAAATTGCCTGCCCAACCCTATATGTATTTGGCCAAGTTATTATCAGAATTGGGTTATGATGGTATTCAAAGCCTTCTGGAGCTCAATTCACGTGAATTCAGTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

232

Amino Acids

26.05

Weight (kDa)

4.96

Isoelectric Point (pI)

49.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ASCH PF04266 97 - 198 6.9e-15 ASCH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 71
AccB1I GGYRCC 2 cut(s) 71, 134
AccI GTMKAC 1 cut(s) 528
AclI AACGTT 1 cut(s) 357
AclWI GGATC 3 cut(s) 249, 388, 388
AcoI YGGCCR 1 cut(s) 621
AcsI RAATTY 1 cut(s) 686
AcuI CTGAAG 1 cut(s) 485
AcvI CACGTG 1 cut(s) 683
AfaI GTAC 1 cut(s) 73
AfiI CCNNNNNNNGG 2 cut(s) 131, 298
AjnI CCWGG 2 cut(s) 75, 493
AluBI AGCT 2 cut(s) 37, 673
AluI AGCT 2 cut(s) 37, 673
Alw21I GWGCWC 2 cut(s) 391, 675
Alw26I GTCTC 1 cut(s) 494
AlwI GGATC 3 cut(s) 249, 388, 388
AoxI GGCC 2 cut(s) 328, 621
ApoI RAATTY 1 cut(s) 686
Asp718I GGTACC 1 cut(s) 71
AspS9I GGNCC 1 cut(s) 561
AsuHPI GGTGA 1 cut(s) 40
AvaII GGWCC 1 cut(s) 561
BaeI ACNNNNGTAYC 2 cut(s) 63, 96
BalI TGGCCA 1 cut(s) 623
BanI GGYRCC 2 cut(s) 71, 134
BanII GRGCYC 2 cut(s) 306, 675
BbrPI CACGTG 1 cut(s) 683
Bbv12I GWGCWC 2 cut(s) 391, 675
BccI CCATC 3 cut(s) 212, 509, 644
BceAI ACGGC 1 cut(s) 343
BciT130I CCWGG 2 cut(s) 77, 495
BcoDI GTCTC 1 cut(s) 494
BfaI CTAG 5 cut(s) 89, 182, 188, 260, 479
BfmI CTRYAG 3 cut(s) 144, 367, 529
Bme1390I CCNGG 2 cut(s) 77, 495
Bme18I GGWCC 1 cut(s) 561
BmgT120I GGNCC 1 cut(s) 561
BmiI GGNNCC 3 cut(s) 73, 136, 303
BmrFI CCNGG 2 cut(s) 77, 495
BpmI CTGGAG 1 cut(s) 689
BpuEI CTTGAG 1 cut(s) 254
Bsa29I ATCGAT 1 cut(s) 84
BsaAI YACGTR 1 cut(s) 683
BsaI GGTCTC 1 cut(s) 494
BsaJI CCNNGG 2 cut(s) 75, 493
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 298
Bse3DI GCAATG 1 cut(s) 573
BseBI CCWGG 2 cut(s) 77, 495
BseCI ATCGAT 1 cut(s) 84
BseDI CCNNGG 2 cut(s) 75, 493
BseLI CCNNNNNNNGG 2 cut(s) 131, 298
BseMI GCAATG 1 cut(s) 573
BseRI GAGGAG 1 cut(s) 104
Bsh1285I CGRYCG 1 cut(s) 440
BshFI GGCC 2 cut(s) 330, 623
BshNI GGYRCC 2 cut(s) 71, 134
BshVI ATCGAT 1 cut(s) 84
BsiEI CGRYCG 1 cut(s) 440
BsiHKAI GWGCWC 2 cut(s) 391, 675
BslFI GGGAC 1 cut(s) 241
BslI CCNNNNNNNGG 2 cut(s) 131, 298
BsmAI GTCTC 1 cut(s) 494
BsmFI GGGAC 1 cut(s) 241
BsnI GGCC 2 cut(s) 330, 623
Bso31I GGTCTC 1 cut(s) 494
Bsp1286I GDGCHC 3 cut(s) 306, 391, 675
Bsp143I GATC 5 cut(s) 85, 241, 380, 393, 437
BspANI GGCC 2 cut(s) 330, 623
BspDI ATCGAT 1 cut(s) 84
BspLI GGNNCC 3 cut(s) 73, 136, 303
BspPI GGATC 3 cut(s) 249, 388, 388
BspQI GCTCTTC 1 cut(s) 27
BspT107I GGYRCC 2 cut(s) 71, 134
BspTNI GGTCTC 1 cut(s) 494
BsrDI GCAATG 1 cut(s) 573
BssECI CCNNGG 2 cut(s) 75, 493
BssMI GATC 5 cut(s) 85, 241, 380, 393, 437
Bst2UI CCWGG 2 cut(s) 77, 495
Bst4CI ACNGT 1 cut(s) 340
Bst6I CTCTTC 2 cut(s) 27, 404
BstBAI YACGTR 1 cut(s) 683
BstC8I GCNNGC 1 cut(s) 600
BstKTI GATC 5 cut(s) 88, 244, 383, 396, 440
BstMAI GTCTC 1 cut(s) 494
BstMBI GATC 5 cut(s) 85, 241, 380, 393, 437
BstMCI CGRYCG 1 cut(s) 440
BstNI CCWGG 2 cut(s) 77, 495
BstSCI CCNGG 2 cut(s) 75, 493
BstSFI CTRYAG 3 cut(s) 144, 367, 529
Bsu15I ATCGAT 1 cut(s) 84
BsuRI GGCC 2 cut(s) 330, 623
BsuTUI ATCGAT 1 cut(s) 84
BtsIMutI CAGTG 3 cut(s) 99, 389, 697
Cac8I GCNNGC 1 cut(s) 600
Cfr13I GGNCC 1 cut(s) 561
ClaI ATCGAT 1 cut(s) 84
Csp6I GTAC 1 cut(s) 72
CviAII CATG 2 cut(s) 28, 293
CviJI RGCY 9 cut(s) 37, 92, 191, 304, 330, 477, 623, 663, 673
CviKI_1 RGCY 9 cut(s) 37, 92, 191, 304, 330, 477, 623, 663, 673
CviQI GTAC 1 cut(s) 72
DpnI GATC 5 cut(s) 87, 243, 382, 395, 439
DpnII GATC 5 cut(s) 85, 241, 380, 393, 437
EaeI YGGCCR 1 cut(s) 621
Eam1104I CTCTTC 2 cut(s) 27, 404
EarI CTCTTC 2 cut(s) 27, 404
Ecl136II GAGCTC 1 cut(s) 673
Eco24I GRGCYC 2 cut(s) 306, 675
Eco31I GGTCTC 1 cut(s) 494
Eco47I GGWCC 1 cut(s) 561
Eco53kI GAGCTC 1 cut(s) 673
Eco57I CTGAAG 1 cut(s) 485
Eco72I CACGTG 1 cut(s) 683
EcoICRI GAGCTC 1 cut(s) 673
EcoRI GAATTC 1 cut(s) 686
EcoRII CCWGG 2 cut(s) 75, 493
EcoT22I ATGCAT 2 cut(s) 220, 587
EcoT38I GRGCYC 2 cut(s) 306, 675
FaeI CATG 2 cut(s) 31, 296
FaqI GGGAC 1 cut(s) 241
FatI CATG 2 cut(s) 27, 292
FauNDI CATATG 1 cut(s) 581
FblI GTMKAC 1 cut(s) 528
FriOI GRGCYC 2 cut(s) 306, 675
FspBI CTAG 5 cut(s) 89, 182, 188, 260, 479
GsuI CTGGAG 1 cut(s) 689
HaeIII GGCC 2 cut(s) 330, 623
Hin1II CATG 2 cut(s) 31, 296
HinfI GANTC 5 cut(s) 56, 200, 375, 446, 537
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 4 cut(s) 48, 251, 280, 529
Hpy188I TCNGA 5 cut(s) 246, 380, 437, 457, 637
Hpy188III TCNNGA 3 cut(s) 299, 384, 668
Hpy8I GTNNAC 4 cut(s) 48, 251, 280, 529
HpyAV CCTTC 4 cut(s) 338, 342, 460, 674
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4IV ACGT 2 cut(s) 357, 682
HpyCH4V TGCA 5 cut(s) 27, 218, 354, 585, 695
HpySE526I ACGT 2 cut(s) 357, 682
Hsp92II CATG 2 cut(s) 31, 296
KpnI GGTACC 1 cut(s) 75
Kzo9I GATC 5 cut(s) 85, 241, 380, 393, 437
LguI GCTCTTC 1 cut(s) 27
LmnI GCTCC 3 cut(s) 301, 386, 670
MaeI CTAG 5 cut(s) 89, 182, 188, 260, 479
MaeII ACGT 2 cut(s) 357, 682
MaeIII GTNAC 1 cut(s) 362
MalI GATC 5 cut(s) 87, 243, 382, 395, 439
MboI GATC 5 cut(s) 85, 241, 380, 393, 437
MboII GAAGA 4 cut(s) 44, 391, 524, 546
MhlI GDGCHC 3 cut(s) 306, 391, 675
MlsI TGGCCA 1 cut(s) 623
MluCI AATT 8 cut(s) 139, 208, 254, 552, 593, 638, 676, 686
MluNI TGGCCA 1 cut(s) 623
MnlI CCTC 5 cut(s) 122, 125, 142, 407, 415
Mox20I TGGCCA 1 cut(s) 623
Mph1103I ATGCAT 2 cut(s) 220, 587
MscI TGGCCA 1 cut(s) 623
MseI TTAA 1 cut(s) 426
Msp20I TGGCCA 1 cut(s) 623
MspR9I CCNGG 2 cut(s) 77, 495
MvaI CCWGG 2 cut(s) 77, 495
NdeI CATATG 1 cut(s) 581
NdeII GATC 5 cut(s) 85, 241, 380, 393, 437
NlaIII CATG 2 cut(s) 31, 296
NlaIV GGNNCC 3 cut(s) 73, 136, 303
NsiI ATGCAT 2 cut(s) 220, 587
PciSI GCTCTTC 1 cut(s) 27
PcsI WCGNNNNNNNCGW 1 cut(s) 446
PfeI GAWTC 5 cut(s) 56, 200, 375, 446, 537
Ple19I CGATCG 1 cut(s) 440
PmaCI CACGTG 1 cut(s) 683
PmlI CACGTG 1 cut(s) 683
Ppu21I YACGTR 1 cut(s) 683
Psp124BI GAGCTC 1 cut(s) 675
Psp1406I AACGTT 1 cut(s) 357
Psp6I CCWGG 2 cut(s) 75, 493
PspCI CACGTG 1 cut(s) 683
PspGI CCWGG 2 cut(s) 75, 493
PspN4I GGNNCC 3 cut(s) 73, 136, 303
PspPI GGNCC 1 cut(s) 561
PsrI GAACNNNNNNTAC 2 cut(s) 434, 466
PvuI CGATCG 1 cut(s) 440
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
SacI GAGCTC 1 cut(s) 675
SapI GCTCTTC 1 cut(s) 27
SaqAI TTAA 1 cut(s) 426
Sau3AI GATC 5 cut(s) 85, 241, 380, 393, 437
Sau96I GGNCC 1 cut(s) 561
ScrFI CCNGG 2 cut(s) 77, 495
SduI GDGCHC 3 cut(s) 306, 391, 675
SetI ASST 8 cut(s) 39, 353, 360, 426, 490, 563, 675, 685
SfcI CTRYAG 3 cut(s) 144, 367, 529
SinI GGWCC 1 cut(s) 561
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 8 cut(s) 139, 208, 254, 552, 593, 638, 676, 686
SspMI CTAG 5 cut(s) 89, 182, 188, 260, 479
SstI GAGCTC 1 cut(s) 675
StyD4I CCNGG 2 cut(s) 75, 493
TaaI ACNGT 1 cut(s) 340
TaiI ACGT 2 cut(s) 360, 685
TaqI TCGA 4 cut(s) 84, 342, 373, 420
TasI AATT 8 cut(s) 139, 208, 254, 552, 593, 638, 676, 686
TfiI GAWTC 5 cut(s) 56, 200, 375, 446, 537
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TscAI CASTG 3 cut(s) 106, 396, 697
TspDTI ATGAA 1 cut(s) 213
TspRI CASTG 3 cut(s) 106, 396, 697
VpaK11BI GGWCC 1 cut(s) 561
XapI RAATTY 1 cut(s) 686
XmiI GTMKAC 1 cut(s) 528
XspI CTAG 5 cut(s) 89, 182, 188, 260, 479
Zsp2I ATGCAT 2 cut(s) 220, 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.