RchiOBHm_Chr6g0305531
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0009403
Physical Location & Seq
Reverse (-)
64507139 .. 64509014
1876 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27458

Sequence Viewer

Length: 1089 bp
ATGAGTACAGGAGATCATGCAAATAAGGAGGACAATTTGCCACCAGGGTTTCGATTTCATCCAACAGATGAAGAACTAATCACGTATTATCTGATGAACAAGATATCAGATGCGACATTCACAGGAAGGGCAATCGCTGATGTTGATCTCAACAAATGTGAACCATGGGAACTTCCTGCAAAAGCGAAAATGGGAGAGAAGGAGTGGTACTTCTTCAGCCTTCGAGATCGGAAATATCCAACCGGAGTAAGAACAAACCGAGCCACAAACACTGGTTACTGGAAGACCACAGGAAAAGACAAGGAGATCTTCAACAGTGCCACCTCTGAGTTGGTTGGGATGAAGAAAACGCTAGTTTTCTATAGAGGCCGAGCTCCCAGAGGCGAGAAATCCAACTGGGTTATGCACGAATATCGCATTCATGCCAAATCCAGCTTTAGACCGTCTAAGTCATTTAAAAATGTTTTTGTGTTGGAACTGTATGATGAATGGGTAATCTGCCGAGTCTTCCAGAAGAGTGCTGGTATTAAAAAGTACCCACCCTCAAACCAATCATCATCATCATCAAGAGCAGCAAATCCCTACAACCTGGAATTGATAGGTCCGAGTGTTAACGTAGTACAATCACCAATAATGCAGGTGGGTCATGAGCACCAGTTCCCTAACTATGGCAGAAACTACATGACCAATGCTGAGATGGCAGAGCTTTCCAGGGTCCTAAGAGGTGGTGGCATTGCTACTGGTTCAACCAGTAGCCCTATGAACCTTCCATTACTTCAACCCCAGTTCAACTACCCCAACATTGGAGGAGGAGGCTTCACAATTTCTGGGCTCAATTTGAACCTTGGGGGCCCATCAACTCATTCTAATTTAAGGCCCATGCCTCCACTACATCAACCTCATCAGGCAATGAACCATGAACAAGATGTTGCCAACTCTTCGATGATGAGTAGTACTAGTGGTGCAGTTGGTCAAGATCAAGCTGGTTATGGTATAGACATGAACAATGGAAATGTGCCTGCAGGAAACAGATACATGAACGTGGTCGACCACTGCGTGGATCTTGATAACTACTGGCCGTCGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

362

Amino Acids

40.47

Weight (kDa)

8.76

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 14 - 140 2.6e-49 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 628
Acc36I ACCTGC 1 cut(s) 628
AccB7I CCANNNNNTGG 1 cut(s) 1057
AccI GTMKAC 1 cut(s) 1047
AclWI GGATC 1 cut(s) 1068
AcoI YGGCCR 1 cut(s) 1076
AcuI CTGAAG 1 cut(s) 199
AdeI CACNNNGTG 1 cut(s) 1057
AfaI GTAC 5 cut(s) 7, 209, 536, 621, 955
AfiI CCNNNNNNNGG 3 cut(s) 668, 803, 1057
AgsI TTSAA 5 cut(s) 313, 747, 779, 790, 841
AhlI ACTAGT 1 cut(s) 956
AjnI CCWGG 3 cut(s) 43, 588, 710
AluBI AGCT 4 cut(s) 374, 435, 706, 983
AluI AGCT 4 cut(s) 374, 435, 706, 983
Alw21I GWGCWC 2 cut(s) 376, 654
AlwI GGATC 1 cut(s) 1068
AoxI GGCC 4 cut(s) 367, 850, 875, 1076
ApaI GGGCCC 1 cut(s) 854
ApeKI GCWGC 1 cut(s) 572
AspS9I GGNCC 5 cut(s) 602, 715, 850, 851, 876
AsuHPI GGTGA 1 cut(s) 618
AvaII GGWCC 2 cut(s) 602, 715
BaeGI GKGCMC 1 cut(s) 854
BanII GRGCYC 3 cut(s) 376, 834, 854
BarI GAAGNNNNNNTAC 2 cut(s) 191, 223
BbsI GAAGAC 2 cut(s) 290, 499
Bbv12I GWGCWC 2 cut(s) 376, 654
BbvI GCAGC 1 cut(s) 584
BccI CCATC 2 cut(s) 691, 862
BceAI ACGGC 1 cut(s) 1063
BcgI CGANNNNNNTGC 2 cut(s) 395, 429
BciT130I CCWGG 3 cut(s) 45, 590, 712
BcuI ACTAGT 1 cut(s) 956
BfaI CTAG 2 cut(s) 353, 957
BfmI CTRYAG 2 cut(s) 361, 1020
BfuAI ACCTGC 1 cut(s) 628
BglII AGATCT 1 cut(s) 306
BisI GCNGC 1 cut(s) 573
BlsI GCNGC 1 cut(s) 574
BmcAI AGTACT 1 cut(s) 955
Bme1390I CCNGG 3 cut(s) 45, 590, 712
Bme18I GGWCC 2 cut(s) 602, 715
BmgT120I GGNCC 5 cut(s) 602, 715, 850, 851, 876
BmiI GGNNCC 3 cut(s) 716, 851, 852
BmrFI CCNGG 3 cut(s) 45, 590, 712
BmrI ACTGGG 2 cut(s) 406, 778
BmsI GCATC 1 cut(s) 100
BmuI ACTGGG 2 cut(s) 406, 778
BpiI GAAGAC 2 cut(s) 290, 499
BsaAI YACGTR 1 cut(s) 84
BsaBI GATNNNNATC 1 cut(s) 144
BsaJI CCNNGG 4 cut(s) 44, 164, 711, 844
BsaWI WCCGGW 1 cut(s) 242
Bsc4I CCNNNNNNNGG 3 cut(s) 668, 803, 1057
Bse1I ACTGG 8 cut(s) 277, 284, 401, 655, 745, 750, 784, 1079
Bse3DI GCAATG 2 cut(s) 732, 915
Bse8I GATNNNNATC 1 cut(s) 144
BseBI CCWGG 3 cut(s) 45, 590, 712
BseDI CCNNGG 4 cut(s) 44, 164, 711, 844
BseGI GGATG 2 cut(s) 58, 345
BseJI GATNNNNATC 1 cut(s) 144
BseLI CCNNNNNNNGG 3 cut(s) 668, 803, 1057
BseMI GCAATG 2 cut(s) 732, 915
BseMII CTCAG 2 cut(s) 318, 684
BseNI ACTGG 8 cut(s) 277, 284, 401, 655, 745, 750, 784, 1079
BseRI GAGGAG 2 cut(s) 822, 825
BseSI GKGCMC 1 cut(s) 854
BseXI GCAGC 1 cut(s) 584
BsgI GTGCAG 1 cut(s) 984
BshFI GGCC 4 cut(s) 369, 852, 877, 1078
BsiHKAI GWGCWC 2 cut(s) 376, 654
BsiSI CCGG 1 cut(s) 243
BslI CCNNNNNNNGG 3 cut(s) 668, 803, 1057
BsmI GAATGC 1 cut(s) 417
BsnI GGCC 4 cut(s) 369, 852, 877, 1078
Bsp120I GGGCCC 1 cut(s) 850
Bsp1286I GDGCHC 4 cut(s) 376, 654, 834, 854
Bsp143I GATC 6 cut(s) 13, 145, 226, 306, 976, 1060
Bsp19I CCATGG 1 cut(s) 164
BspANI GGCC 4 cut(s) 369, 852, 877, 1078
BspCNI CTCAG 2 cut(s) 319, 685
BspHI TCATGA 1 cut(s) 646
BspLI GGNNCC 3 cut(s) 716, 851, 852
BspMAI CTGCAG 1 cut(s) 1024
BspMI ACCTGC 1 cut(s) 628
BspPI GGATC 1 cut(s) 1068
BsrDI GCAATG 2 cut(s) 732, 915
BsrI ACTGG 8 cut(s) 277, 284, 401, 655, 745, 750, 784, 1079
BssECI CCNNGG 4 cut(s) 44, 164, 711, 844
BssMI GATC 6 cut(s) 13, 145, 226, 306, 976, 1060
BssT1I CCWWGG 2 cut(s) 164, 844
Bst2UI CCWGG 3 cut(s) 45, 590, 712
Bst4CI ACNGT 3 cut(s) 317, 444, 480
Bst6I CTCTTC 2 cut(s) 509, 943
BstBAI YACGTR 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 1020
BstDEI CTNAG 4 cut(s) 327, 447, 693, 719
BstDSI CCRYGG 1 cut(s) 164
BstF5I GGATG 2 cut(s) 58, 345
BstKTI GATC 6 cut(s) 16, 148, 229, 309, 979, 1063
BstMBI GATC 6 cut(s) 13, 145, 226, 306, 976, 1060
BstMWI GCNNNNNNNGC 1 cut(s) 698
BstNI CCWGG 3 cut(s) 45, 590, 712
BstSCI CCNGG 3 cut(s) 43, 588, 710
BstSFI CTRYAG 2 cut(s) 361, 1020
BstSLI GKGCMC 1 cut(s) 854
BstV1I GCAGC 1 cut(s) 584
BstV2I GAAGAC 2 cut(s) 290, 499
BstX2I RGATCY 2 cut(s) 306, 1060
BstYI RGATCY 2 cut(s) 306, 1060
BsuRI GGCC 4 cut(s) 369, 852, 877, 1078
BtgI CCRYGG 1 cut(s) 164
BtsCI GGATG 2 cut(s) 58, 345
BtsI GCAGTG 1 cut(s) 1051
BtsIMutI CAGTG 3 cut(s) 270, 322, 1051
BveI ACCTGC 1 cut(s) 628
Cac8I GCNNGC 1 cut(s) 1020
CciI TCATGA 1 cut(s) 646
Cfr13I GGNCC 5 cut(s) 602, 715, 850, 851, 876
Csp6I GTAC 5 cut(s) 6, 208, 535, 620, 954
CviAII CATG 9 cut(s) 17, 165, 422, 647, 682, 880, 917, 1000, 1036
CviQI GTAC 5 cut(s) 6, 208, 535, 620, 954
DdeI CTNAG 4 cut(s) 327, 447, 693, 719
DpnI GATC 6 cut(s) 15, 147, 228, 308, 978, 1062
DpnII GATC 6 cut(s) 13, 145, 226, 306, 976, 1060
DraI TTTAAA 1 cut(s) 457
DraIII CACNNNGTG 1 cut(s) 1057
EaeI YGGCCR 1 cut(s) 1076
Eam1104I CTCTTC 2 cut(s) 509, 943
EarI CTCTTC 2 cut(s) 509, 943
Ecl136II GAGCTC 1 cut(s) 374
Eco130I CCWWGG 2 cut(s) 164, 844
Eco24I GRGCYC 3 cut(s) 376, 834, 854
Eco32I GATATC 1 cut(s) 105
Eco47I GGWCC 2 cut(s) 602, 715
Eco53kI GAGCTC 1 cut(s) 374
Eco57I CTGAAG 1 cut(s) 199
EcoICRI GAGCTC 1 cut(s) 374
EcoO109I RGGNCCY 2 cut(s) 715, 850
EcoRII CCWGG 3 cut(s) 43, 588, 710
EcoRV GATATC 1 cut(s) 105
EcoT14I CCWWGG 2 cut(s) 164, 844
EcoT38I GRGCYC 3 cut(s) 376, 834, 854
ErhI CCWWGG 2 cut(s) 164, 844
FaeI CATG 9 cut(s) 20, 168, 425, 650, 685, 883, 920, 1003, 1039
FalI AAGNNNNNCTT 2 cut(s) 293, 325
FatI CATG 9 cut(s) 16, 164, 421, 646, 681, 879, 916, 999, 1035
FblI GTMKAC 1 cut(s) 1047
Fnu4HI GCNGC 1 cut(s) 573
FokI GGATG 2 cut(s) 45, 352
FriOI GRGCYC 3 cut(s) 376, 834, 854
Fsp4HI GCNGC 1 cut(s) 573
FspBI CTAG 2 cut(s) 353, 957
GluI GCNGC 1 cut(s) 573
HaeIII GGCC 4 cut(s) 369, 852, 877, 1078
HapII CCGG 1 cut(s) 243
Hin1II CATG 9 cut(s) 20, 168, 425, 650, 685, 883, 920, 1003, 1039
HincII GTYRAC 2 cut(s) 613, 1048
HindII GTYRAC 2 cut(s) 613, 1048
HinfI GANTC 1 cut(s) 504
HpaI GTTAAC 1 cut(s) 613
HpaII CCGG 1 cut(s) 243
HphI GGTGA 1 cut(s) 618
Hpy166II GTNNAC 3 cut(s) 161, 613, 1048
Hpy188I TCNGA 5 cut(s) 93, 109, 231, 328, 606
Hpy188III TCNNGA 6 cut(s) 224, 511, 567, 647, 974, 1064
Hpy8I GTNNAC 3 cut(s) 161, 613, 1048
Hpy99I CGWCG 1 cut(s) 1084
HpyAV CCTTC 4 cut(s) 120, 193, 230, 776
HpyCH4III ACNGT 3 cut(s) 317, 444, 480
HpyCH4IV ACGT 3 cut(s) 83, 615, 1041
HpyCH4V TGCA 6 cut(s) 20, 179, 406, 637, 965, 1022
HpyF10VI GCNNNNNNNGC 1 cut(s) 698
HpyF3I CTNAG 4 cut(s) 327, 447, 693, 719
HpySE526I ACGT 3 cut(s) 83, 615, 1041
Hsp92II CATG 9 cut(s) 20, 168, 425, 650, 685, 883, 920, 1003, 1039
KspAI GTTAAC 1 cut(s) 613
Kzo9I GATC 6 cut(s) 13, 145, 226, 306, 976, 1060
LmnI GCTCC 1 cut(s) 379
Lsp1109I GCAGC 1 cut(s) 584
LweI GCATC 1 cut(s) 100
MaeI CTAG 2 cut(s) 353, 957
MaeII ACGT 3 cut(s) 83, 615, 1041
MaeIII GTNAC 1 cut(s) 275
MalI GATC 6 cut(s) 15, 147, 228, 308, 978, 1062
MboI GATC 6 cut(s) 13, 145, 226, 306, 976, 1060
MboII GAAGA 8 cut(s) 83, 205, 295, 301, 355, 499, 526, 930
MflI RGATCY 2 cut(s) 306, 1060
MhlI GDGCHC 4 cut(s) 376, 654, 834, 854
MluCI AATT 5 cut(s) 34, 593, 822, 835, 868
MlyI GAGTC 1 cut(s) 513
MmeI TCCRAC 4 cut(s) 86, 263, 417, 453
MseI TTAA 4 cut(s) 456, 528, 612, 872
MslI CAYNNNNRTG 1 cut(s) 1040
MspI CCGG 1 cut(s) 243
MspR9I CCNGG 3 cut(s) 45, 590, 712
Mva1269I GAATGC 1 cut(s) 417
MvaI CCWGG 3 cut(s) 45, 590, 712
MwoI GCNNNNNNNGC 1 cut(s) 698
NcoI CCATGG 1 cut(s) 164
NdeII GATC 6 cut(s) 13, 145, 226, 306, 976, 1060
NlaIII CATG 9 cut(s) 20, 168, 425, 650, 685, 883, 920, 1003, 1039
NlaIV GGNNCC 3 cut(s) 716, 851, 852
NmeAIII GCCGAG 2 cut(s) 395, 527
PagI TCATGA 1 cut(s) 646
PaqCI CACCTGC 1 cut(s) 628
PcsI WCGNNNNNNNCGW 1 cut(s) 1053
PctI GAATGC 1 cut(s) 417
PflMI CCANNNNNTGG 1 cut(s) 1057
PkrI GCNGC 1 cut(s) 574
PleI GAGTC 1 cut(s) 512
PpsI GAGTC 1 cut(s) 512
Ppu21I YACGTR 1 cut(s) 84
PpuMI RGGWCCY 1 cut(s) 715
Psp124BI GAGCTC 1 cut(s) 376
Psp5II RGGWCCY 1 cut(s) 715
Psp6I CCWGG 3 cut(s) 43, 588, 710
PspGI CCWGG 3 cut(s) 43, 588, 710
PspN4I GGNNCC 3 cut(s) 716, 851, 852
PspOMI GGGCCC 1 cut(s) 850
PspPI GGNCC 5 cut(s) 602, 715, 850, 851, 876
PspPPI RGGWCCY 1 cut(s) 715
PstI CTGCAG 1 cut(s) 1024
PsuI RGATCY 2 cut(s) 306, 1060
RsaI GTAC 5 cut(s) 7, 209, 536, 621, 955
RsaNI GTAC 5 cut(s) 6, 208, 535, 620, 954
RseI CAYNNNNRTG 1 cut(s) 1040
SacI GAGCTC 1 cut(s) 376
SalI GTCGAC 1 cut(s) 1046
SaqAI TTAA 4 cut(s) 456, 528, 612, 872
SatI GCNGC 1 cut(s) 573
Sau3AI GATC 6 cut(s) 13, 145, 226, 306, 976, 1060
Sau96I GGNCC 5 cut(s) 602, 715, 850, 851, 876
SbfI CCTGCAGG 1 cut(s) 1024
ScaI AGTACT 1 cut(s) 955
SchI GAGTC 1 cut(s) 513
ScrFI CCNGG 3 cut(s) 45, 590, 712
SdaI CCTGCAGG 1 cut(s) 1024
SduI GDGCHC 4 cut(s) 376, 654, 834, 854
SfaNI GCATC 1 cut(s) 100
SfcI CTRYAG 2 cut(s) 361, 1020
SinI GGWCC 2 cut(s) 602, 715
SmiMI CAYNNNNRTG 1 cut(s) 1040
SpeI ACTAGT 1 cut(s) 956
Sse8387I CCTGCAGG 1 cut(s) 1024
Sse9I AATT 5 cut(s) 34, 593, 822, 835, 868
SspMI CTAG 2 cut(s) 353, 957
SstI GAGCTC 1 cut(s) 376
StyD4I CCNGG 3 cut(s) 43, 588, 710
StyI CCWWGG 2 cut(s) 164, 844
TaaI ACNGT 3 cut(s) 317, 444, 480
TaiI ACGT 3 cut(s) 86, 618, 1044
TaqI TCGA 4 cut(s) 52, 223, 941, 1047
TasI AATT 5 cut(s) 34, 593, 822, 835, 868
TatI WGTACW 3 cut(s) 5, 619, 953
Tru1I TTAA 4 cut(s) 456, 528, 612, 872
Tru9I TTAA 4 cut(s) 456, 528, 612, 872
TscAI CASTG 3 cut(s) 277, 322, 1058
TseI GCWGC 1 cut(s) 572
TspRI CASTG 3 cut(s) 277, 322, 1058
Van91I CCANNNNNTGG 1 cut(s) 1057
VpaK11BI GGWCC 2 cut(s) 602, 715
XcmI CCANNNNNNNNNTGG 3 cut(s) 328, 518, 694
XmiI GTMKAC 1 cut(s) 1047
XspI CTAG 2 cut(s) 353, 957
ZrmI AGTACT 1 cut(s) 955
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.