Rroxscaffold_7G00162610
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0009403
Physical Location & Seq
Forward (+)
5044262 .. 5046786
2525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00162610.1

Sequence Viewer

Length: 1056 bp
ATGAGTACAGGAGATCATGCAAATAAGGAGGACAATTTGCCACCAGGGTTTCGATTTCATCCAACAGATGAAGAACTAATCACGTATTATCTGATGAACAAGATATCAGATGCGACATTCACAGGAAGGGCAATCGCTGATGTTGATCTCAACAAATGTGAACCATGGGAACTTCCTGCAAAAGCGAAAATGGGAGAGAAGGAGTGGTACTTCTTCAGCCTTCGAGATCGGAAATATCCAACCGGAGTACGAACAAACCGAGCCACAAACACTGGTTACTGGAAGACCACAGGAAAAGACAAGGAGATCTTCAACAGTGCCACCTCTGAGTTGGTTGGGATGAAGAAAACGCTAGTTTTCTATAGAGGCCGAGCTCCCAGAGGCGAGAAATCCAACTGGGTTATGCACGAATATCGCATTCATGCCAAATCCAGCTTTAGACCGTCTAAGGATGAATGGGTAGTCTGCCGAGTCTTCCAGAAGAGTGCTGGTATTAAAAAGTACCCACCCTCAAACCAATCATCATCATCATCAAGAGCAGCAAATCCCTACAACCTGGAATTGATAGGTCCGAGTGTTAACGTAGTACAATCACCAATAATGCAGGTGGGTCATGAGCACCAGTTCCCTAACTATGGCAGAAACTACATGACCAATGCTGAGATGGCAGAGCTTTCCAGGGTCCTAAGAGGTGGTGGCATTGCTACTGGTTCAACCAGTAGCCCTATGAACCTTCCATTACTCCAGCCCCAGTTCAACTACCCCAACATTGGAGGAGGAGGCTTCACAATTTCTGGGCTCAATTTGAACCTTGGGGGCCCATCAACTCAGTCTAATTTAAGGCCCATGCCTCCACTACATCAACCTCATCAGGCAATGAACCATCAACAAGATGTTGCCAACTCTTCGATGATGAGTAGTACTAGTGGTGCAGTTGGTCAAGATCAAGCTGGCTATGGTATAGACATGAACAATGGAAATGTGCCTGCAGGAAACAGATACATGAACGTGGTCGACCACTGCGTGGATCTTGACAACTACTGGCCTCCGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

351

Amino Acids

39.11

Weight (kDa)

8.92

Isoelectric Point (pI)

41.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 14 - 140 2.5e-49 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 595
Acc36I ACCTGC 1 cut(s) 595
AccB7I CCANNNNNTGG 1 cut(s) 1024
AccI GTMKAC 1 cut(s) 1014
AclWI GGATC 1 cut(s) 1035
AcuI CTGAAG 1 cut(s) 199
AdeI CACNNNGTG 1 cut(s) 1024
AfaI GTAC 6 cut(s) 7, 209, 249, 503, 588, 922
AfiI CCNNNNNNNGG 3 cut(s) 635, 770, 1024
AgsI TTSAA 4 cut(s) 313, 714, 757, 808
AhlI ACTAGT 1 cut(s) 923
AjnI CCWGG 3 cut(s) 43, 555, 677
AluBI AGCT 4 cut(s) 374, 435, 673, 950
AluI AGCT 4 cut(s) 374, 435, 673, 950
Alw21I GWGCWC 2 cut(s) 376, 621
AlwI GGATC 1 cut(s) 1035
AoxI GGCC 4 cut(s) 367, 817, 842, 1043
ApaI GGGCCC 1 cut(s) 821
ApeKI GCWGC 1 cut(s) 539
AspS9I GGNCC 5 cut(s) 569, 682, 817, 818, 843
AsuHPI GGTGA 1 cut(s) 585
AvaII GGWCC 2 cut(s) 569, 682
BaeGI GKGCMC 1 cut(s) 821
BanII GRGCYC 3 cut(s) 376, 801, 821
BarI GAAGNNNNNNTAC 2 cut(s) 191, 223
BbsI GAAGAC 2 cut(s) 290, 466
Bbv12I GWGCWC 2 cut(s) 376, 621
BbvI GCAGC 1 cut(s) 551
BccI CCATC 3 cut(s) 658, 829, 891
BcgI CGANNNNNNTGC 2 cut(s) 395, 429
BciT130I CCWGG 3 cut(s) 45, 557, 679
BcuI ACTAGT 1 cut(s) 923
BfaI CTAG 2 cut(s) 353, 924
BfmI CTRYAG 2 cut(s) 361, 987
BfuAI ACCTGC 1 cut(s) 595
BglII AGATCT 1 cut(s) 306
BisI GCNGC 1 cut(s) 540
BlsI GCNGC 1 cut(s) 541
BmcAI AGTACT 1 cut(s) 922
Bme1390I CCNGG 3 cut(s) 45, 557, 679
Bme18I GGWCC 2 cut(s) 569, 682
BmgT120I GGNCC 5 cut(s) 569, 682, 817, 818, 843
BmiI GGNNCC 3 cut(s) 683, 818, 819
BmrFI CCNGG 3 cut(s) 45, 557, 679
BmrI ACTGGG 2 cut(s) 406, 745
BmsI GCATC 1 cut(s) 100
BmuI ACTGGG 2 cut(s) 406, 745
BpiI GAAGAC 2 cut(s) 290, 466
BpmI CTGGAG 1 cut(s) 728
BsaAI YACGTR 1 cut(s) 84
BsaBI GATNNNNATC 1 cut(s) 144
BsaJI CCNNGG 4 cut(s) 44, 164, 678, 811
BsaWI WCCGGW 1 cut(s) 242
Bsc4I CCNNNNNNNGG 3 cut(s) 635, 770, 1024
Bse1I ACTGG 8 cut(s) 277, 284, 401, 622, 712, 717, 751, 1046
Bse3DI GCAATG 2 cut(s) 699, 882
Bse8I GATNNNNATC 1 cut(s) 144
BseBI CCWGG 3 cut(s) 45, 557, 679
BseDI CCNNGG 4 cut(s) 44, 164, 678, 811
BseGI GGATG 3 cut(s) 58, 345, 457
BseJI GATNNNNATC 1 cut(s) 144
BseLI CCNNNNNNNGG 3 cut(s) 635, 770, 1024
BseMI GCAATG 2 cut(s) 699, 882
BseMII CTCAG 3 cut(s) 318, 651, 842
BseNI ACTGG 8 cut(s) 277, 284, 401, 622, 712, 717, 751, 1046
BseRI GAGGAG 2 cut(s) 789, 792
BseSI GKGCMC 1 cut(s) 821
BseXI GCAGC 1 cut(s) 551
BsgI GTGCAG 1 cut(s) 951
BshFI GGCC 4 cut(s) 369, 819, 844, 1045
BsiHKAI GWGCWC 2 cut(s) 376, 621
BsiSI CCGG 1 cut(s) 243
BslI CCNNNNNNNGG 3 cut(s) 635, 770, 1024
BsmI GAATGC 1 cut(s) 417
BsnI GGCC 4 cut(s) 369, 819, 844, 1045
Bsp120I GGGCCC 1 cut(s) 817
Bsp1286I GDGCHC 4 cut(s) 376, 621, 801, 821
Bsp143I GATC 6 cut(s) 13, 145, 226, 306, 943, 1027
Bsp19I CCATGG 1 cut(s) 164
BspANI GGCC 4 cut(s) 369, 819, 844, 1045
BspCNI CTCAG 3 cut(s) 319, 652, 841
BspHI TCATGA 1 cut(s) 613
BspLI GGNNCC 3 cut(s) 683, 818, 819
BspMAI CTGCAG 1 cut(s) 991
BspMI ACCTGC 1 cut(s) 595
BspPI GGATC 1 cut(s) 1035
BsrDI GCAATG 2 cut(s) 699, 882
BsrI ACTGG 8 cut(s) 277, 284, 401, 622, 712, 717, 751, 1046
BssECI CCNNGG 4 cut(s) 44, 164, 678, 811
BssMI GATC 6 cut(s) 13, 145, 226, 306, 943, 1027
BssT1I CCWWGG 2 cut(s) 164, 811
Bst2UI CCWGG 3 cut(s) 45, 557, 679
Bst4CI ACNGT 2 cut(s) 317, 444
Bst6I CTCTTC 2 cut(s) 476, 910
BstBAI YACGTR 1 cut(s) 84
BstC8I GCNNGC 2 cut(s) 952, 987
BstDEI CTNAG 5 cut(s) 327, 447, 660, 686, 828
BstDSI CCRYGG 1 cut(s) 164
BstF5I GGATG 3 cut(s) 58, 345, 457
BstKTI GATC 6 cut(s) 16, 148, 229, 309, 946, 1030
BstMBI GATC 6 cut(s) 13, 145, 226, 306, 943, 1027
BstMWI GCNNNNNNNGC 1 cut(s) 665
BstNI CCWGG 3 cut(s) 45, 557, 679
BstSCI CCNGG 3 cut(s) 43, 555, 677
BstSFI CTRYAG 2 cut(s) 361, 987
BstSLI GKGCMC 1 cut(s) 821
BstV1I GCAGC 1 cut(s) 551
BstV2I GAAGAC 2 cut(s) 290, 466
BstX2I RGATCY 2 cut(s) 306, 1027
BstYI RGATCY 2 cut(s) 306, 1027
BsuRI GGCC 4 cut(s) 369, 819, 844, 1045
BtgI CCRYGG 1 cut(s) 164
BtsCI GGATG 3 cut(s) 58, 345, 457
BtsI GCAGTG 1 cut(s) 1018
BtsIMutI CAGTG 3 cut(s) 270, 322, 1018
BveI ACCTGC 1 cut(s) 595
Cac8I GCNNGC 2 cut(s) 952, 987
CciI TCATGA 1 cut(s) 613
Cfr13I GGNCC 5 cut(s) 569, 682, 817, 818, 843
Csp6I GTAC 6 cut(s) 6, 208, 248, 502, 587, 921
CviAII CATG 8 cut(s) 17, 165, 422, 614, 649, 847, 967, 1003
CviQI GTAC 6 cut(s) 6, 208, 248, 502, 587, 921
DdeI CTNAG 5 cut(s) 327, 447, 660, 686, 828
DpnI GATC 6 cut(s) 15, 147, 228, 308, 945, 1029
DpnII GATC 6 cut(s) 13, 145, 226, 306, 943, 1027
DraIII CACNNNGTG 1 cut(s) 1024
Eam1104I CTCTTC 2 cut(s) 476, 910
EarI CTCTTC 2 cut(s) 476, 910
Ecl136II GAGCTC 1 cut(s) 374
Eco130I CCWWGG 2 cut(s) 164, 811
Eco24I GRGCYC 3 cut(s) 376, 801, 821
Eco32I GATATC 1 cut(s) 105
Eco47I GGWCC 2 cut(s) 569, 682
Eco53kI GAGCTC 1 cut(s) 374
Eco57I CTGAAG 1 cut(s) 199
EcoICRI GAGCTC 1 cut(s) 374
EcoO109I RGGNCCY 2 cut(s) 682, 817
EcoRII CCWGG 3 cut(s) 43, 555, 677
EcoRV GATATC 1 cut(s) 105
EcoT14I CCWWGG 2 cut(s) 164, 811
EcoT38I GRGCYC 3 cut(s) 376, 801, 821
ErhI CCWWGG 2 cut(s) 164, 811
FaeI CATG 8 cut(s) 20, 168, 425, 617, 652, 850, 970, 1006
FalI AAGNNNNNCTT 2 cut(s) 293, 325
FatI CATG 8 cut(s) 16, 164, 421, 613, 648, 846, 966, 1002
FblI GTMKAC 1 cut(s) 1014
Fnu4HI GCNGC 1 cut(s) 540
FokI GGATG 3 cut(s) 45, 352, 464
FriOI GRGCYC 3 cut(s) 376, 801, 821
Fsp4HI GCNGC 1 cut(s) 540
FspBI CTAG 2 cut(s) 353, 924
GluI GCNGC 1 cut(s) 540
GsuI CTGGAG 1 cut(s) 728
HaeIII GGCC 4 cut(s) 369, 819, 844, 1045
HapII CCGG 1 cut(s) 243
Hin1II CATG 8 cut(s) 20, 168, 425, 617, 652, 850, 970, 1006
HincII GTYRAC 2 cut(s) 580, 1015
HindII GTYRAC 2 cut(s) 580, 1015
HinfI GANTC 1 cut(s) 471
HpaI GTTAAC 1 cut(s) 580
HpaII CCGG 1 cut(s) 243
HphI GGTGA 1 cut(s) 585
Hpy166II GTNNAC 3 cut(s) 161, 580, 1015
Hpy188I TCNGA 5 cut(s) 93, 109, 231, 328, 573
Hpy188III TCNNGA 6 cut(s) 224, 478, 534, 614, 941, 1031
Hpy8I GTNNAC 3 cut(s) 161, 580, 1015
HpyAV CCTTC 4 cut(s) 120, 193, 230, 743
HpyCH4III ACNGT 2 cut(s) 317, 444
HpyCH4IV ACGT 3 cut(s) 83, 582, 1008
HpyCH4V TGCA 6 cut(s) 20, 179, 406, 604, 932, 989
HpyF10VI GCNNNNNNNGC 1 cut(s) 665
HpyF3I CTNAG 5 cut(s) 327, 447, 660, 686, 828
HpySE526I ACGT 3 cut(s) 83, 582, 1008
Hsp92II CATG 8 cut(s) 20, 168, 425, 617, 652, 850, 970, 1006
KspAI GTTAAC 1 cut(s) 580
Kzo9I GATC 6 cut(s) 13, 145, 226, 306, 943, 1027
LmnI GCTCC 1 cut(s) 379
Lsp1109I GCAGC 1 cut(s) 551
LweI GCATC 1 cut(s) 100
MaeI CTAG 2 cut(s) 353, 924
MaeII ACGT 3 cut(s) 83, 582, 1008
MaeIII GTNAC 1 cut(s) 275
MalI GATC 6 cut(s) 15, 147, 228, 308, 945, 1029
MboI GATC 6 cut(s) 13, 145, 226, 306, 943, 1027
MboII GAAGA 8 cut(s) 83, 205, 295, 301, 355, 466, 493, 897
MflI RGATCY 2 cut(s) 306, 1027
MhlI GDGCHC 4 cut(s) 376, 621, 801, 821
MluCI AATT 5 cut(s) 34, 560, 789, 802, 835
MlyI GAGTC 1 cut(s) 480
MmeI TCCRAC 3 cut(s) 86, 263, 417
MseI TTAA 3 cut(s) 495, 579, 839
MslI CAYNNNNRTG 1 cut(s) 1007
MspI CCGG 1 cut(s) 243
MspR9I CCNGG 3 cut(s) 45, 557, 679
Mva1269I GAATGC 1 cut(s) 417
MvaI CCWGG 3 cut(s) 45, 557, 679
MwoI GCNNNNNNNGC 1 cut(s) 665
NcoI CCATGG 1 cut(s) 164
NdeII GATC 6 cut(s) 13, 145, 226, 306, 943, 1027
NlaIII CATG 8 cut(s) 20, 168, 425, 617, 652, 850, 970, 1006
NlaIV GGNNCC 3 cut(s) 683, 818, 819
NmeAIII GCCGAG 2 cut(s) 395, 494
PagI TCATGA 1 cut(s) 613
PaqCI CACCTGC 1 cut(s) 595
PcsI WCGNNNNNNNCGW 2 cut(s) 256, 1020
PctI GAATGC 1 cut(s) 417
PflMI CCANNNNNTGG 1 cut(s) 1024
PkrI GCNGC 1 cut(s) 541
PleI GAGTC 1 cut(s) 479
PpsI GAGTC 1 cut(s) 479
Ppu21I YACGTR 1 cut(s) 84
PpuMI RGGWCCY 1 cut(s) 682
Psp124BI GAGCTC 1 cut(s) 376
Psp5II RGGWCCY 1 cut(s) 682
Psp6I CCWGG 3 cut(s) 43, 555, 677
PspGI CCWGG 3 cut(s) 43, 555, 677
PspN4I GGNNCC 3 cut(s) 683, 818, 819
PspOMI GGGCCC 1 cut(s) 817
PspPI GGNCC 5 cut(s) 569, 682, 817, 818, 843
PspPPI RGGWCCY 1 cut(s) 682
PstI CTGCAG 1 cut(s) 991
PsuI RGATCY 2 cut(s) 306, 1027
RsaI GTAC 6 cut(s) 7, 209, 249, 503, 588, 922
RsaNI GTAC 6 cut(s) 6, 208, 248, 502, 587, 921
RseI CAYNNNNRTG 1 cut(s) 1007
SacI GAGCTC 1 cut(s) 376
SalI GTCGAC 1 cut(s) 1013
SaqAI TTAA 3 cut(s) 495, 579, 839
SatI GCNGC 1 cut(s) 540
Sau3AI GATC 6 cut(s) 13, 145, 226, 306, 943, 1027
Sau96I GGNCC 5 cut(s) 569, 682, 817, 818, 843
SbfI CCTGCAGG 1 cut(s) 991
ScaI AGTACT 1 cut(s) 922
SchI GAGTC 1 cut(s) 480
ScrFI CCNGG 3 cut(s) 45, 557, 679
SdaI CCTGCAGG 1 cut(s) 991
SduI GDGCHC 4 cut(s) 376, 621, 801, 821
SfaNI GCATC 1 cut(s) 100
SfcI CTRYAG 2 cut(s) 361, 987
SinI GGWCC 2 cut(s) 569, 682
SmiMI CAYNNNNRTG 1 cut(s) 1007
SpeI ACTAGT 1 cut(s) 923
Sse8387I CCTGCAGG 1 cut(s) 991
Sse9I AATT 5 cut(s) 34, 560, 789, 802, 835
SspMI CTAG 2 cut(s) 353, 924
SstI GAGCTC 1 cut(s) 376
StyD4I CCNGG 3 cut(s) 43, 555, 677
StyI CCWWGG 2 cut(s) 164, 811
TaaI ACNGT 2 cut(s) 317, 444
TaiI ACGT 3 cut(s) 86, 585, 1011
TaqI TCGA 4 cut(s) 52, 223, 908, 1014
TasI AATT 5 cut(s) 34, 560, 789, 802, 835
TatI WGTACW 3 cut(s) 5, 586, 920
Tru1I TTAA 3 cut(s) 495, 579, 839
Tru9I TTAA 3 cut(s) 495, 579, 839
TscAI CASTG 3 cut(s) 277, 322, 1025
TseI GCWGC 1 cut(s) 539
TspGWI ACGGA 1 cut(s) 1038
TspRI CASTG 3 cut(s) 277, 322, 1025
Van91I CCANNNNNTGG 1 cut(s) 1024
VpaK11BI GGWCC 2 cut(s) 569, 682
XcmI CCANNNNNNNNNTGG 3 cut(s) 328, 485, 661
XmiI GTMKAC 1 cut(s) 1014
XspI CTAG 2 cut(s) 353, 924
ZrmI AGTACT 1 cut(s) 922
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.