FvH4_2g36350
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0009403
Physical Location & Seq
Forward (+)
26619205 .. 26621920
2716 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g36350.t1

Sequence Viewer

Length: 1059 bp
ATGAGTACAGGAGATCATGCAAATAAGGAGGACAATTTGCCACCAGGGTTTCGATTTCATCCAACAGATGAGGAACTGATTACGTATTATCTGATGAACAAGATATCAGATGCTACATTCACAGGAAGGGCAATCGCTGATGTTGATCTCAACAAATGTGAACCATGGGAACTTCCTGCAAAGGCGAAAATGGGAGAGAAGGAGTGGTACTTCTTCAGCCTTCGAGATCGGAAATATCCAACCGGAGTGAGAACAAACCGAGCCACAAACACTGGATACTGGAAGACCACAGGAAAAGACAAAGAGATCTTCAACAGTGCCACCTCTGAGCTGGTTGGGATGAAGAAAACTCTAGTTTTCTATAGAGGCCGAGCTCCCAGGGGAGAGAAATCCAACTGGGTTATGCACGAATATCGCATTCATTCCAAATCCAGTTTTAGACCGTCTAAGGATGAATGGGTAGTATGCCGAGTCTTCCAGAAGAGTGCTGGTGTTAAAAAGTACCCACCCTCAAACCAATCATCATCTTCATCAAGAGGAGCAAATCCCTACAACATGGAACTAATGGGTCCGAGTGTTAACGTAGTTCAATCACCCATAATGCAGCTTGGTCATGAGCACCAGTTCCCAAACTACGGCAGAAGCTACATGACCAACGCTGAGATGGCAGAGCTTTCCAGGGTCCTGAGAGGTGGTGGCGTTGCTACTGGTTCAACCAGTAGCCCTATGAACCTTCCCTTGCTGCAACCCCAGTTCAGCTACCCCAACCTTGGAGGAGGAGGCTTCACAATTTCTGGGCTCAATTTGAACCTTGGGGGCCCATCAACTCAGTCTAACTTAAGGCCCATGTCTGGAATACATCAAGCTCATCAGGCAATGAACAATCATCAAGATGTTGCTAACTCTTCAATGATGACTAGTGCTGGTGGTGCTGTTGGTCAAGATCAAGCTGGGTATGGTAATATAGACATGAACAATGGAAATGTGCCTGCCGGGAACAGATACATGAACATGGTCGACCAGTGCGTCGATCTCGATCACTACTGGCCGTCGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

353

Amino Acids

39.1

Weight (kDa)

8.92

Isoelectric Point (pI)

41.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 14 - 140 2.5e-49 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1025
AccI GTMKAC 1 cut(s) 1017
AcoI YGGCCR 1 cut(s) 1046
AcuI CTGAAG 1 cut(s) 199
AfaI GTAC 3 cut(s) 7, 209, 503
AfiI CCNNNNNNNGG 3 cut(s) 635, 770, 851
AflII CTTAAG 1 cut(s) 838
AgsI TTSAA 5 cut(s) 313, 590, 714, 808, 909
AhlI ACTAGT 1 cut(s) 917
AjnI CCWGG 3 cut(s) 43, 377, 677
AluBI AGCT 8 cut(s) 331, 374, 607, 645, 673, 759, 866, 950
AluI AGCT 8 cut(s) 331, 374, 607, 645, 673, 759, 866, 950
Alw21I GWGCWC 2 cut(s) 376, 621
AoxI GGCC 4 cut(s) 367, 817, 842, 1046
ApaI GGGCCC 1 cut(s) 821
ApeKI GCWGC 2 cut(s) 604, 742
AspS9I GGNCC 5 cut(s) 569, 682, 817, 818, 843
AsuC2I CCSGG 1 cut(s) 994
AsuHPI GGTGA 1 cut(s) 585
AvaII GGWCC 2 cut(s) 569, 682
BaeGI GKGCMC 1 cut(s) 821
BanII GRGCYC 3 cut(s) 376, 801, 821
BarI GAAGNNNNNNTAC 2 cut(s) 191, 223
BbsI GAAGAC 2 cut(s) 290, 466
Bbv12I GWGCWC 2 cut(s) 376, 621
BbvI GCAGC 2 cut(s) 616, 729
BccI CCATC 2 cut(s) 658, 829
BceAI ACGGC 2 cut(s) 652, 1033
BcgI CGANNNNNNTGC 2 cut(s) 395, 429
BciT130I CCWGG 3 cut(s) 45, 379, 679
BciVI GTATCC 1 cut(s) 269
BcnI CCSGG 1 cut(s) 994
BcuI ACTAGT 1 cut(s) 917
BfaI CTAG 2 cut(s) 353, 918
BfmI CTRYAG 1 cut(s) 361
BfrI CTTAAG 1 cut(s) 838
BfuI GTATCC 1 cut(s) 269
BglII AGATCT 1 cut(s) 306
BisI GCNGC 2 cut(s) 605, 743
BlsI GCNGC 2 cut(s) 606, 744
Bme1390I CCNGG 4 cut(s) 45, 379, 679, 994
Bme18I GGWCC 2 cut(s) 569, 682
BmgT120I GGNCC 5 cut(s) 569, 682, 817, 818, 843
BmiI GGNNCC 4 cut(s) 570, 683, 818, 819
BmrFI CCNGG 4 cut(s) 45, 379, 679, 994
BmrI ACTGGG 2 cut(s) 406, 745
BmsI GCATC 1 cut(s) 100
BmuI ACTGGG 2 cut(s) 406, 745
BpiI GAAGAC 2 cut(s) 290, 466
BpuMI CCSGG 1 cut(s) 994
BsaAI YACGTR 1 cut(s) 84
BsaBI GATNNNNATC 2 cut(s) 144, 1035
BsaJI CCNNGG 7 cut(s) 44, 164, 377, 378, 678, 769, 811
BsaWI WCCGGW 1 cut(s) 242
Bsc4I CCNNNNNNNGG 3 cut(s) 635, 770, 851
Bse3DI GCAATG 1 cut(s) 882
Bse8I GATNNNNATC 2 cut(s) 144, 1035
BseBI CCWGG 3 cut(s) 45, 379, 679
BseDI CCNNGG 7 cut(s) 44, 164, 377, 378, 678, 769, 811
BseGI GGATG 3 cut(s) 58, 345, 457
BseJI GATNNNNATC 2 cut(s) 144, 1035
BseLI CCNNNNNNNGG 3 cut(s) 635, 770, 851
BseMI GCAATG 1 cut(s) 882
BseMII CTCAG 4 cut(s) 318, 651, 677, 842
BseRI GAGGAG 3 cut(s) 552, 789, 792
BseSI GKGCMC 1 cut(s) 821
BseXI GCAGC 2 cut(s) 616, 729
BseYI CCCAGC 1 cut(s) 950
BshFI GGCC 4 cut(s) 369, 819, 844, 1048
BsiHKAI GWGCWC 2 cut(s) 376, 621
BsiSI CCGG 2 cut(s) 243, 993
BslI CCNNNNNNNGG 3 cut(s) 635, 770, 851
BsmI GAATGC 1 cut(s) 417
BsnI GGCC 4 cut(s) 369, 819, 844, 1048
Bsp120I GGGCCC 1 cut(s) 817
Bsp1286I GDGCHC 4 cut(s) 376, 621, 801, 821
Bsp143I GATC 7 cut(s) 13, 145, 226, 306, 943, 1030, 1036
Bsp19I CCATGG 1 cut(s) 164
BspANI GGCC 4 cut(s) 369, 819, 844, 1048
BspCNI CTCAG 4 cut(s) 319, 652, 678, 841
BspHI TCATGA 1 cut(s) 613
BspLI GGNNCC 4 cut(s) 570, 683, 818, 819
BspTI CTTAAG 1 cut(s) 838
BsrDI GCAATG 1 cut(s) 882
BssECI CCNNGG 7 cut(s) 44, 164, 377, 378, 678, 769, 811
BssMI GATC 7 cut(s) 13, 145, 226, 306, 943, 1030, 1036
BssT1I CCWWGG 3 cut(s) 164, 769, 811
Bst2UI CCWGG 3 cut(s) 45, 379, 679
Bst4CI ACNGT 2 cut(s) 317, 444
Bst6I CTCTTC 2 cut(s) 476, 910
BstAFI CTTAAG 1 cut(s) 838
BstBAI YACGTR 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 990
BstDEI CTNAG 5 cut(s) 327, 447, 660, 686, 828
BstDSI CCRYGG 1 cut(s) 164
BstF5I GGATG 3 cut(s) 58, 345, 457
BstKTI GATC 7 cut(s) 16, 148, 229, 309, 946, 1033, 1039
BstMBI GATC 7 cut(s) 13, 145, 226, 306, 943, 1030, 1036
BstMWI GCNNNNNNNGC 3 cut(s) 665, 872, 929
BstNI CCWGG 3 cut(s) 45, 379, 679
BstSCI CCNGG 4 cut(s) 43, 377, 677, 992
BstSFI CTRYAG 1 cut(s) 361
BstSLI GKGCMC 1 cut(s) 821
BstSNI TACGTA 1 cut(s) 84
BstV1I GCAGC 2 cut(s) 616, 729
BstV2I GAAGAC 2 cut(s) 290, 466
BstX2I RGATCY 1 cut(s) 306
BstYI RGATCY 1 cut(s) 306
BsuI GTATCC 1 cut(s) 269
BsuRI GGCC 4 cut(s) 369, 819, 844, 1048
BtgI CCRYGG 1 cut(s) 164
BtsCI GGATG 3 cut(s) 58, 345, 457
BtsIMutI CAGTG 3 cut(s) 270, 322, 1028
Cac8I GCNNGC 1 cut(s) 990
CciI TCATGA 1 cut(s) 613
Cfr13I GGNCC 5 cut(s) 569, 682, 817, 818, 843
CseI GACGC 1 cut(s) 1015
Csp6I GTAC 3 cut(s) 6, 208, 502
CviAII CATG 9 cut(s) 17, 165, 556, 614, 649, 847, 970, 1006, 1012
CviQI GTAC 3 cut(s) 6, 208, 502
DdeI CTNAG 5 cut(s) 327, 447, 660, 686, 828
DpnI GATC 7 cut(s) 15, 147, 228, 308, 945, 1032, 1038
DpnII GATC 7 cut(s) 13, 145, 226, 306, 943, 1030, 1036
DrdI GACNNNNNNGTC 1 cut(s) 1025
DseDI GACNNNNNNGTC 1 cut(s) 1025
EaeI YGGCCR 1 cut(s) 1046
Eam1104I CTCTTC 2 cut(s) 476, 910
EarI CTCTTC 2 cut(s) 476, 910
Ecl136II GAGCTC 1 cut(s) 374
Eco105I TACGTA 1 cut(s) 84
Eco130I CCWWGG 3 cut(s) 164, 769, 811
Eco24I GRGCYC 3 cut(s) 376, 801, 821
Eco32I GATATC 1 cut(s) 105
Eco47I GGWCC 2 cut(s) 569, 682
Eco53kI GAGCTC 1 cut(s) 374
Eco57I CTGAAG 1 cut(s) 199
EcoICRI GAGCTC 1 cut(s) 374
EcoO109I RGGNCCY 2 cut(s) 682, 817
EcoRII CCWGG 3 cut(s) 43, 377, 677
EcoRV GATATC 1 cut(s) 105
EcoT14I CCWWGG 3 cut(s) 164, 769, 811
EcoT38I GRGCYC 3 cut(s) 376, 801, 821
ErhI CCWWGG 3 cut(s) 164, 769, 811
FaeI CATG 9 cut(s) 20, 168, 559, 617, 652, 850, 973, 1009, 1015
FatI CATG 9 cut(s) 16, 164, 555, 613, 648, 846, 969, 1005, 1011
FblI GTMKAC 1 cut(s) 1017
Fnu4HI GCNGC 2 cut(s) 605, 743
FokI GGATG 3 cut(s) 45, 352, 464
FriOI GRGCYC 3 cut(s) 376, 801, 821
Fsp4HI GCNGC 2 cut(s) 605, 743
FspBI CTAG 2 cut(s) 353, 918
GluI GCNGC 2 cut(s) 605, 743
GsaI CCCAGC 1 cut(s) 954
HaeIII GGCC 4 cut(s) 369, 819, 844, 1048
HapII CCGG 2 cut(s) 243, 993
HgaI GACGC 1 cut(s) 1015
Hin1II CATG 9 cut(s) 20, 168, 559, 617, 652, 850, 973, 1009, 1015
HincII GTYRAC 2 cut(s) 580, 1018
HindII GTYRAC 2 cut(s) 580, 1018
HinfI GANTC 1 cut(s) 471
HpaI GTTAAC 1 cut(s) 580
HpaII CCGG 2 cut(s) 243, 993
HphI GGTGA 1 cut(s) 585
Hpy166II GTNNAC 3 cut(s) 161, 580, 1018
Hpy188I TCNGA 5 cut(s) 93, 109, 231, 328, 573
Hpy188III TCNNGA 9 cut(s) 224, 478, 534, 614, 685, 852, 890, 941, 1034
Hpy8I GTNNAC 3 cut(s) 161, 580, 1018
Hpy99I CGWCG 2 cut(s) 1031, 1054
HpyAV CCTTC 4 cut(s) 120, 193, 230, 743
HpyCH4III ACNGT 2 cut(s) 317, 444
HpyCH4IV ACGT 2 cut(s) 83, 582
HpyCH4V TGCA 5 cut(s) 20, 179, 406, 604, 745
HpyF10VI GCNNNNNNNGC 3 cut(s) 665, 872, 929
HpyF3I CTNAG 5 cut(s) 327, 447, 660, 686, 828
HpySE526I ACGT 2 cut(s) 83, 582
Hsp92II CATG 9 cut(s) 20, 168, 559, 617, 652, 850, 973, 1009, 1015
KspAI GTTAAC 1 cut(s) 580
Kzo9I GATC 7 cut(s) 13, 145, 226, 306, 943, 1030, 1036
LmnI GCTCC 2 cut(s) 379, 539
Lsp1109I GCAGC 2 cut(s) 616, 729
LweI GCATC 1 cut(s) 100
MaeI CTAG 2 cut(s) 353, 918
MaeII ACGT 2 cut(s) 83, 582
MalI GATC 7 cut(s) 15, 147, 228, 308, 945, 1032, 1038
MboI GATC 7 cut(s) 13, 145, 226, 306, 943, 1030, 1036
MboII GAAGA 8 cut(s) 205, 295, 301, 355, 466, 493, 519, 897
MflI RGATCY 1 cut(s) 306
MhlI GDGCHC 4 cut(s) 376, 621, 801, 821
MluCI AATT 3 cut(s) 34, 789, 802
MlyI GAGTC 1 cut(s) 480
MmeI TCCRAC 3 cut(s) 86, 263, 417
MseI TTAA 3 cut(s) 495, 579, 839
MslI CAYNNNNRTG 2 cut(s) 891, 1010
MspCI CTTAAG 1 cut(s) 838
MspI CCGG 2 cut(s) 243, 993
MspR9I CCNGG 4 cut(s) 45, 379, 679, 994
Mva1269I GAATGC 1 cut(s) 417
MvaI CCWGG 3 cut(s) 45, 379, 679
MwoI GCNNNNNNNGC 3 cut(s) 665, 872, 929
NciI CCSGG 1 cut(s) 994
NcoI CCATGG 1 cut(s) 164
NdeII GATC 7 cut(s) 13, 145, 226, 306, 943, 1030, 1036
NlaIII CATG 9 cut(s) 20, 168, 559, 617, 652, 850, 973, 1009, 1015
NlaIV GGNNCC 4 cut(s) 570, 683, 818, 819
NmeAIII GCCGAG 2 cut(s) 395, 494
PagI TCATGA 1 cut(s) 613
PasI CCCWGGG 1 cut(s) 378
PcsI WCGNNNNNNNCGW 1 cut(s) 1023
PctI GAATGC 1 cut(s) 417
PkrI GCNGC 2 cut(s) 606, 744
PleI GAGTC 1 cut(s) 479
PpsI GAGTC 1 cut(s) 479
Ppu21I YACGTR 1 cut(s) 84
PpuMI RGGWCCY 1 cut(s) 682
Psp124BI GAGCTC 1 cut(s) 376
Psp5II RGGWCCY 1 cut(s) 682
Psp6I CCWGG 3 cut(s) 43, 377, 677
PspFI CCCAGC 1 cut(s) 950
PspGI CCWGG 3 cut(s) 43, 377, 677
PspN4I GGNNCC 4 cut(s) 570, 683, 818, 819
PspOMI GGGCCC 1 cut(s) 817
PspPI GGNCC 5 cut(s) 569, 682, 817, 818, 843
PspPPI RGGWCCY 1 cut(s) 682
PsuI RGATCY 1 cut(s) 306
RsaI GTAC 3 cut(s) 7, 209, 503
RsaNI GTAC 3 cut(s) 6, 208, 502
RseI CAYNNNNRTG 2 cut(s) 891, 1010
SacI GAGCTC 1 cut(s) 376
SalI GTCGAC 1 cut(s) 1016
SaqAI TTAA 3 cut(s) 495, 579, 839
SatI GCNGC 2 cut(s) 605, 743
Sau3AI GATC 7 cut(s) 13, 145, 226, 306, 943, 1030, 1036
Sau96I GGNCC 5 cut(s) 569, 682, 817, 818, 843
SchI GAGTC 1 cut(s) 480
ScrFI CCNGG 4 cut(s) 45, 379, 679, 994
SduI GDGCHC 4 cut(s) 376, 621, 801, 821
SfaNI GCATC 1 cut(s) 100
SfcI CTRYAG 1 cut(s) 361
SinI GGWCC 2 cut(s) 569, 682
SmiMI CAYNNNNRTG 2 cut(s) 891, 1010
SmlI CTYRAG 1 cut(s) 838
SmoI CTYRAG 1 cut(s) 838
SnaBI TACGTA 1 cut(s) 84
SpeI ACTAGT 1 cut(s) 917
Sse9I AATT 3 cut(s) 34, 789, 802
SspMI CTAG 2 cut(s) 353, 918
SstI GAGCTC 1 cut(s) 376
StyD4I CCNGG 4 cut(s) 43, 377, 677, 992
StyI CCWWGG 3 cut(s) 164, 769, 811
TaaI ACNGT 2 cut(s) 317, 444
TaiI ACGT 2 cut(s) 86, 585
TaqI TCGA 5 cut(s) 52, 223, 1017, 1029, 1035
TasI AATT 3 cut(s) 34, 789, 802
TatI WGTACW 1 cut(s) 5
Tru1I TTAA 3 cut(s) 495, 579, 839
Tru9I TTAA 3 cut(s) 495, 579, 839
TscAI CASTG 3 cut(s) 277, 322, 1028
TseI GCWGC 2 cut(s) 604, 742
TspRI CASTG 3 cut(s) 277, 322, 1028
Vha464I CTTAAG 1 cut(s) 838
VpaK11BI GGWCC 2 cut(s) 569, 682
XcmI CCANNNNNNNNNTGG 3 cut(s) 328, 485, 661
XmiI GTMKAC 1 cut(s) 1017
XspI CTAG 2 cut(s) 353, 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.