AT2G24590

Serine arginine-rich splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010800
Physical Location & Seq
Forward (+)
10449631 .. 10451184
1554 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G24590.1

Sequence Viewer

Length: 591 bp
ATGTCGCGTGTGTATGTTGGTAATTTGGATCCGCGAGTTACTGAACGTGAACTCGAGGATGAGTTTCGTTCCTTTGGTGTGATCAGGAGTGTCTGGGTTGCTAGAAGACCTCCTGGTTACGCTTTTCTTGATTTTGAAGATTCAAGAGATGCCCGTGACGCCATCCGTGAAGTAGATGGCAAGAATGGATGGAGGGTAGAGCAGTCTCATAACCGTGGTGGTGGTGGAGGTCGTGGTGGTGGTCGTGGAGGAGGTGATGGTGGTCGTGGACGTGGTGGTTCTGATTTGAAGTGCTATGAGTGTGGTGAGTCTGGTCACTTTGCACGTGAATGTCGTTCTCGTGGTGGTTCTGGTGGTAGGCGTCGTAGCCGCAGCCGTAGTCGCAGTCCTCCTAGATACAGAAAGAGTCCTACCTATGGAGGACGAAGAAGTTACAGCCCTCGTGCTAGATCTCCTCCTCCTCCAAGACGTCGTAGTCCTTCTCCTCGTGGTCGCAACTACAGTAGGTCACCACCACCTTATAGAGCACGTGACGAGGTGCCATATGCTAATGGAAATGGTCTGAAAGATGTGCGCAGAAGCCGGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031503 GO:0031974 GO:0031981 GO:0033036 GO:0033119 GO:0034613 GO:0034641 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0045934 GO:0046483 GO:0046907 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050657 GO:0050658 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051253 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903312
KEGG Pathways
Metabolic & Signaling
ko03040 ko05168 map03040 map05168
Pfam Domains
Protein Families
RRM_1 zf-CCHC

Protein Analysis

196

Amino Acids

21.91

Weight (kDa)

11.34

Isoelectric Point (pI)

104.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 4 - 61 8.9e-17 RNA recognition motif
zf-CCHC PF00098 97 - 112 5.7e-07 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 474
AatII GACGTC 1 cut(s) 472
Acc16I TGCGCA 1 cut(s) 575
AccB1I GGYRCC 1 cut(s) 538
AccII CGCG 2 cut(s) 7, 34
AciI CCGC 2 cut(s) 32, 370
AclWI GGATC 2 cut(s) 23, 36
AcvI CACGTG 2 cut(s) 326, 530
AcyI GRCGYC 3 cut(s) 159, 361, 469
AfiI CCNNNNNNNGG 1 cut(s) 416
AgsI TTSAA 3 cut(s) 137, 144, 289
AjiI CACGTC 1 cut(s) 272
AjnI CCWGG 1 cut(s) 112
AluBI AGCT 1 cut(s) 588
AluI AGCT 1 cut(s) 588
Alw21I GWGCWC 1 cut(s) 529
Alw26I GTCTC 1 cut(s) 210
AlwI GGATC 2 cut(s) 23, 36
Ama87I CYCGRG 1 cut(s) 53
ApeKI GCWGC 1 cut(s) 372
AspLEI GCGC 1 cut(s) 576
AsuHPI GGTGA 3 cut(s) 266, 317, 501
AvaI CYCGRG 1 cut(s) 53
BamHI GGATCC 1 cut(s) 28
BanI GGYRCC 1 cut(s) 538
BauI CACGAG 3 cut(s) 339, 441, 486
BbrPI CACGTG 2 cut(s) 326, 530
BbsI GAAGAC 1 cut(s) 112
Bbv12I GWGCWC 1 cut(s) 529
BbvI GCAGC 1 cut(s) 384
BccI CCATC 4 cut(s) 170, 170, 183, 251
BceAI ACGGC 1 cut(s) 360
BciT130I CCWGG 1 cut(s) 114
BclI TGATCA 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 210
BfaI CTAG 3 cut(s) 102, 393, 447
BfmI CTRYAG 1 cut(s) 499
BglII AGATCT 1 cut(s) 449
BisI GCNGC 2 cut(s) 370, 373
BlsI GCNGC 2 cut(s) 371, 374
Bme1390I CCNGG 1 cut(s) 114
BmeT110I CYCGRG 1 cut(s) 53
BmgBI CACGTC 1 cut(s) 272
BmiI GGNNCC 2 cut(s) 30, 540
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 1 cut(s) 139
BpiI GAAGAC 1 cut(s) 112
BsaAI YACGTR 2 cut(s) 326, 530
BsaHI GRCGYC 3 cut(s) 159, 361, 469
BsaJI CCNNGG 1 cut(s) 214
Bsc4I CCNNNNNNNGG 1 cut(s) 416
BseBI CCWGG 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 214
BseGI GGATG 3 cut(s) 64, 162, 194
BseLI CCNNNNNNNGG 1 cut(s) 416
BseRI GAGGAG 5 cut(s) 264, 444, 447, 450, 474
BseXI GCAGC 1 cut(s) 384
Bsh1236I CGCG 2 cut(s) 7, 34
BshNI GGYRCC 1 cut(s) 538
BsiHKAI GWGCWC 1 cut(s) 529
BsiHKCI CYCGRG 1 cut(s) 53
BsiSI CCGG 1 cut(s) 583
BslI CCNNNNNNNGG 1 cut(s) 416
BsmAI GTCTC 1 cut(s) 210
BsoBI CYCGRG 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 529
Bsp143I GATC 3 cut(s) 28, 81, 449
BspACI CCGC 2 cut(s) 32, 370
BspFNI CGCG 2 cut(s) 7, 34
BspLI GGNNCC 2 cut(s) 30, 540
BspPI GGATC 2 cut(s) 23, 36
BspT107I GGYRCC 1 cut(s) 538
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 3 cut(s) 28, 81, 449
BssNI GRCGYC 3 cut(s) 159, 361, 469
BssSI CACGAG 3 cut(s) 339, 441, 486
Bst2BI CACGAG 3 cut(s) 339, 441, 486
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 2 cut(s) 215, 503
BstACI GRCGYC 3 cut(s) 159, 361, 469
BstBAI YACGTR 2 cut(s) 326, 530
BstDSI CCRYGG 1 cut(s) 214
BstEII GGTNACC 1 cut(s) 507
BstF5I GGATG 3 cut(s) 64, 162, 194
BstFNI CGCG 2 cut(s) 7, 34
BstHHI GCGC 1 cut(s) 576
BstKTI GATC 3 cut(s) 31, 84, 452
BstMAI GTCTC 1 cut(s) 210
BstMBI GATC 3 cut(s) 28, 81, 449
BstMWI GCNNNNNNNGC 2 cut(s) 158, 381
BstNI CCWGG 1 cut(s) 114
BstPI GGTNACC 1 cut(s) 507
BstSCI CCNGG 1 cut(s) 112
BstSFI CTRYAG 1 cut(s) 499
BstUI CGCG 2 cut(s) 7, 34
BstV1I GCAGC 1 cut(s) 384
BstV2I GAAGAC 1 cut(s) 112
BstX2I RGATCY 2 cut(s) 28, 449
BstYI RGATCY 2 cut(s) 28, 449
BtgI CCRYGG 1 cut(s) 214
BtrI CACGTC 1 cut(s) 272
BtsCI GGATG 3 cut(s) 64, 162, 194
CfoI GCGC 1 cut(s) 576
CseI GACGC 2 cut(s) 167, 350
CviJI RGCY 5 cut(s) 369, 375, 438, 582, 588
CviKI_1 RGCY 5 cut(s) 369, 375, 438, 582, 588
DpnI GATC 3 cut(s) 30, 83, 451
DpnII GATC 3 cut(s) 28, 81, 449
DrdI GACNNNNNNGTC 1 cut(s) 474
DseDI GACNNNNNNGTC 1 cut(s) 474
Eco72I CACGTG 2 cut(s) 326, 530
Eco88I CYCGRG 1 cut(s) 53
Eco91I GGTNACC 1 cut(s) 507
EcoO65I GGTNACC 1 cut(s) 507
EcoRII CCWGG 1 cut(s) 112
FaiI YATR 7 cut(s) 15, 210, 297, 417, 522, 544, 546
FauNDI CATATG 1 cut(s) 544
FbaI TGATCA 1 cut(s) 81
Fnu4HI GCNGC 2 cut(s) 370, 373
FokI GGATG 3 cut(s) 71, 149, 201
Fsp4HI GCNGC 2 cut(s) 370, 373
FspBI CTAG 3 cut(s) 102, 393, 447
FspI TGCGCA 1 cut(s) 575
GlaI GCGC 1 cut(s) 575
GluI GCNGC 2 cut(s) 370, 373
HapII CCGG 1 cut(s) 583
HgaI GACGC 2 cut(s) 167, 350
HhaI GCGC 1 cut(s) 576
Hin1I GRCGYC 3 cut(s) 159, 361, 469
Hin6I GCGC 1 cut(s) 574
HinP1I GCGC 1 cut(s) 574
HinfI GANTC 3 cut(s) 140, 308, 406
HpaII CCGG 1 cut(s) 583
HphI GGTGA 3 cut(s) 266, 317, 501
Hpy166II GTNNAC 2 cut(s) 50, 269
Hpy188I TCNGA 2 cut(s) 283, 564
Hpy188III TCNNGA 3 cut(s) 85, 128, 144
Hpy8I GTNNAC 2 cut(s) 50, 269
Hpy99I CGWCG 2 cut(s) 366, 474
HpyAV CCTTC 1 cut(s) 489
HpyCH4III ACNGT 2 cut(s) 215, 503
HpyCH4IV ACGT 5 cut(s) 46, 271, 325, 469, 529
HpyCH4V TGCA 1 cut(s) 323
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 381
HpySE526I ACGT 5 cut(s) 46, 271, 325, 469, 529
Hsp92I GRCGYC 3 cut(s) 159, 361, 469
HspAI GCGC 1 cut(s) 574
Ksp22I TGATCA 1 cut(s) 81
Kzo9I GATC 3 cut(s) 28, 81, 449
LmnI GCTCC 1 cut(s) 585
LpnPI CCDG 6 cut(s) 70, 79, 99, 126, 297, 336
Lsp1109I GCAGC 1 cut(s) 384
LweI GCATC 1 cut(s) 139
MaeI CTAG 3 cut(s) 102, 393, 447
MaeII ACGT 5 cut(s) 46, 271, 325, 469, 529
MaeIII GTNAC 7 cut(s) 37, 116, 155, 314, 431, 507, 530
MalI GATC 3 cut(s) 30, 83, 451
MboI GATC 3 cut(s) 28, 81, 449
MboII GAAGA 3 cut(s) 117, 149, 438
MflI RGATCY 2 cut(s) 28, 449
MhlI GDGCHC 1 cut(s) 529
MluCI AATT 1 cut(s) 22
MlyI GAGTC 2 cut(s) 317, 415
MslI CAYNNNNRTG 2 cut(s) 213, 328
MspI CCGG 1 cut(s) 583
MspR9I CCNGG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 114
MvnI CGCG 2 cut(s) 7, 34
MwoI GCNNNNNNNGC 2 cut(s) 158, 381
NdeI CATATG 1 cut(s) 544
NdeII GATC 3 cut(s) 28, 81, 449
NlaIV GGNNCC 2 cut(s) 30, 540
NmuCI GTSAC 4 cut(s) 155, 314, 507, 530
NsbI TGCGCA 1 cut(s) 575
PaeR7I CTCGAG 1 cut(s) 53
PcsI WCGNNNNNNNCGW 1 cut(s) 331
PfeI GAWTC 1 cut(s) 140
PkrI GCNGC 2 cut(s) 371, 374
PleI GAGTC 2 cut(s) 316, 414
PmaCI CACGTG 2 cut(s) 326, 530
PmlI CACGTG 2 cut(s) 326, 530
PpsI GAGTC 2 cut(s) 316, 414
Ppu21I YACGTR 2 cut(s) 326, 530
Psp6I CCWGG 1 cut(s) 112
PspCI CACGTG 2 cut(s) 326, 530
PspEI GGTNACC 1 cut(s) 507
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 2 cut(s) 30, 540
PspXI VCTCGAGB 1 cut(s) 53
PsuI RGATCY 2 cut(s) 28, 449
RseI CAYNNNNRTG 2 cut(s) 213, 328
SatI GCNGC 2 cut(s) 370, 373
Sau3AI GATC 3 cut(s) 28, 81, 449
SchI GAGTC 2 cut(s) 317, 415
ScrFI CCNGG 1 cut(s) 114
SduI GDGCHC 1 cut(s) 529
SfaNI GCATC 1 cut(s) 139
SfcI CTRYAG 1 cut(s) 499
Sfr274I CTCGAG 1 cut(s) 53
SlaI CTCGAG 1 cut(s) 53
SmiMI CAYNNNNRTG 2 cut(s) 213, 328
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
Sse9I AATT 1 cut(s) 22
SsiI CCGC 2 cut(s) 32, 370
SspMI CTAG 3 cut(s) 102, 393, 447
StyD4I CCNGG 1 cut(s) 112
TaaI ACNGT 2 cut(s) 215, 503
TaiI ACGT 5 cut(s) 49, 274, 328, 472, 532
TaqI TCGA 1 cut(s) 54
TasI AATT 1 cut(s) 22
TauI GCSGC 1 cut(s) 372
TfiI GAWTC 1 cut(s) 140
TseFI GTSAC 4 cut(s) 155, 314, 507, 530
TseI GCWGC 1 cut(s) 372
Tsp45I GTSAC 4 cut(s) 155, 314, 507, 530
TspGWI ACGGA 1 cut(s) 155
XhoI CTCGAG 1 cut(s) 53
XspI CTAG 3 cut(s) 102, 393, 447
ZraI GACGTC 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.