Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0010800

Physical Location & Seq

Genomic Coordinates Reverse (-)

5413551 .. 5415275

Gene Structure 1725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00163080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGTCTCGCGTCTACGTTGGGAACTTGAGTTCTCGAGTTTCGGAGGGGGAGCTCGAAGATGAGTTTCGCAATTTCGGAGTTATTAGAAGTGTGTGGGTTGCAAGGAGGCCACCGGGTTATGCTTTCGTCGACTTTGATGACAGCCGAGATGCCGAGGATGCCATTCGTGAATTAGATGGCAAGAATGGCTGGAGAGTTGAGCTTTCACACAACTCTAGAGGTGGTGGTGGTGGTGGTCGTGGCGGAGGAGGTCGTGGACGTTCTGGTGGTTCTGATTTGAAGTGCTACGAGTGTGGTGAGCCAGGTCATTTTGCTCGTGAATGCCGTCTGCGTGGTGGTTCTGGAAGGCGTCGTAGCCGCAGCCCACCTAGATATCGCAGAAGTCCTAGCTATGGCAGGAGGAGCTATAGTCCACGTGGGCGCTCTCCCCCACCCAGACGTCGCAGTTTGACACCACCCCGGGGTGGGCACAGCCGTAGCAGGTCTCCACCATACCGTGGACGGGACGAGTTGCCATATGCAAATGGTAATGGCTTGAAGGATCGACGCAGAAGCAGGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

187

Amino Acids

20.9

Weight (kDa)

11.3

Isoelectric Point (pI)

104.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	4 - 61	4e-17	RNA recognition motif
zf-CCHC	PF00098	94 - 109	1e-07	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24590
fragaria_vesca	FvH4_2g36630 FvH4_2g36630
malus_domestica	MD08G1126400.v1.1 MD15G1106100.v1.1
prunus_persica	Prupe.1G458000_v2.0.a1 Prupe.1G458000_v2.0.a1 Prupe.1G458000_v2.0.a1 Prupe.1G458000_v2.0.a1
pyrus_communis	pycom08g10560
rosa_chinensis	RchiOBHm_Chr6g0305171
rosa_laevigata	RLG00000010911
rosa_roxburghii	Rroxscaffold_7G00163080
rosa_rugosa	Rorug06G0338300
rosa_samantha	Rh2AG066100 Rh6AG449900 Rh6BG451500 Rh6CG463600 Rh6DG450500
rosa_wichuraiana	Rw6G039190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	442
Acc36I	ACCTGC	1 cut(s)	471
AccB7I	CCANNNNNTGG	1 cut(s)	497
AccI	GTMKAC	2 cut(s)	12, 129
AccII	CGCG	1 cut(s)	9
AciI	CCGC	2 cut(s)	243, 358
AclWI	GGATC	1 cut(s)	549
AcvI	CACGTG	1 cut(s)	416
AcyI	GRCGYC	2 cut(s)	349, 439
AfiI	CCNNNNNNNGG	6 cut(s)	392, 461, 464, 465, 497, 502
AgsI	TTSAA	2 cut(s)	280, 538
AjnI	CCWGG	1 cut(s)	301
AloI	GAACNNNNNNTCC	2 cut(s)	13, 45
AluBI	AGCT	4 cut(s)	52, 202, 390, 405
AluI	AGCT	4 cut(s)	52, 202, 390, 405
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	2 cut(s)	9, 489
AlwI	GGATC	1 cut(s)	549
Ama87I	CYCGRG	2 cut(s)	33, 459
AoxI	GGCC	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	360
AspLEI	GCGC	1 cut(s)	423
AsuC2I	CCSGG	3 cut(s)	114, 460, 461
AsuHPI	GGTGA	1 cut(s)	308
AvaI	CYCGRG	2 cut(s)	33, 459
BaeGI	GKGCMC	1 cut(s)	471
BanII	GRGCYC	1 cut(s)	54
BauI	CACGAG	1 cut(s)	315
BbrPI	CACGTG	1 cut(s)	416
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	372
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	2 cut(s)	309, 459
BciT130I	CCWGG	1 cut(s)	303
BcnI	CCSGG	3 cut(s)	114, 460, 461
BcoDI	GTCTC	2 cut(s)	9, 489
BfaI	CTAG	3 cut(s)	216, 369, 387
BfmI	CTRYAG	1 cut(s)	406
BfoI	RGCGCY	1 cut(s)	424
BfuAI	ACCTGC	1 cut(s)	471
BisI	GCNGC	2 cut(s)	358, 361
BlsI	GCNGC	2 cut(s)	359, 362
Bme1390I	CCNGG	4 cut(s)	114, 303, 460, 461
BmeT110I	CYCGRG	2 cut(s)	33, 459
BmrFI	CCNGG	4 cut(s)	114, 303, 460, 461
BmsI	GCATC	2 cut(s)	139, 148
BpmI	CTGGAG	1 cut(s)	211
BpuEI	CTTGAG	1 cut(s)	46
BpuMI	CCSGG	3 cut(s)	114, 460, 461
BsaAI	YACGTR	1 cut(s)	416
BsaHI	GRCGYC	2 cut(s)	349, 439
BsaI	GGTCTC	1 cut(s)	489
BsaJI	CCNNGG	5 cut(s)	153, 458, 459, 460, 496
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bsc4I	CCNNNNNNNGG	6 cut(s)	392, 461, 464, 465, 497, 502
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	5 cut(s)	153, 458, 459, 460, 496
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	6 cut(s)	392, 461, 464, 465, 497, 502
BseRI	GAGGAG	2 cut(s)	261, 415
BseSI	GKGCMC	1 cut(s)	471
BseXI	GCAGC	1 cut(s)	372
Bsh1236I	CGCG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	54
BsiHKCI	CYCGRG	2 cut(s)	33, 459
BsiSI	CCGG	2 cut(s)	113, 460
BslFI	GGGAC	1 cut(s)	518
BslI	CCNNNNNNNGG	6 cut(s)	392, 461, 464, 465, 497, 502
BsmAI	GTCTC	2 cut(s)	9, 489
BsmFI	GGGAC	1 cut(s)	518
BsmI	GAATGC	1 cut(s)	326
BsnI	GGCC	1 cut(s)	109
Bso31I	GGTCTC	1 cut(s)	489
BsoBI	CYCGRG	2 cut(s)	33, 459
Bsp1286I	GDGCHC	2 cut(s)	54, 471
Bsp143I	GATC	1 cut(s)	541
BspACI	CCGC	2 cut(s)	243, 358
BspANI	GGCC	1 cut(s)	109
BspFNI	CGCG	1 cut(s)	9
BspMI	ACCTGC	1 cut(s)	471
BspPI	GGATC	1 cut(s)	549
BspTNI	GGTCTC	1 cut(s)	489
BssECI	CCNNGG	5 cut(s)	153, 458, 459, 460, 496
BssMI	GATC	1 cut(s)	541
BssNI	GRCGYC	2 cut(s)	349, 439
BssSI	CACGAG	1 cut(s)	315
Bst2BI	CACGAG	1 cut(s)	315
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	497
BstACI	GRCGYC	2 cut(s)	349, 439
BstBAI	YACGTR	1 cut(s)	416
BstDSI	CCRYGG	1 cut(s)	496
BstF5I	GGATG	1 cut(s)	163
BstFNI	CGCG	1 cut(s)	9
BstH2I	RGCGCY	1 cut(s)	424
BstHHI	GCGC	1 cut(s)	423
BstKTI	GATC	1 cut(s)	544
BstMAI	GTCTC	2 cut(s)	9, 489
BstMBI	GATC	1 cut(s)	541
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 186, 402
BstNI	CCWGG	1 cut(s)	303
BstSCI	CCNGG	4 cut(s)	112, 301, 458, 459
BstSFI	CTRYAG	1 cut(s)	406
BstSLI	GKGCMC	1 cut(s)	471
BstUI	CGCG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	372
BsuRI	GGCC	1 cut(s)	109
BtgI	CCRYGG	1 cut(s)	496
BtsCI	GGATG	1 cut(s)	163
BveI	ACCTGC	1 cut(s)	471
CfoI	GCGC	1 cut(s)	423
Cfr9I	CCCGGG	1 cut(s)	459
CseI	GACGC	2 cut(s)	338, 555
DpnI	GATC	1 cut(s)	543
DpnII	GATC	1 cut(s)	541
EciI	GGCGGA	1 cut(s)	258
Ecl136II	GAGCTC	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	54
Eco31I	GGTCTC	1 cut(s)	489
Eco32I	GATATC	1 cut(s)	374
Eco53kI	GAGCTC	1 cut(s)	52
Eco72I	CACGTG	1 cut(s)	416
Eco88I	CYCGRG	2 cut(s)	33, 459
EcoICRI	GAGCTC	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	301
EcoRV	GATATC	1 cut(s)	374
EcoT38I	GRGCYC	1 cut(s)	54
FaiI	YATR	6 cut(s)	120, 393, 408, 493, 517, 519
FaqI	GGGAC	1 cut(s)	518
FauNDI	CATATG	1 cut(s)	517
FblI	GTMKAC	2 cut(s)	12, 129
Fnu4HI	GCNGC	2 cut(s)	358, 361
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	2 cut(s)	358, 361
FspBI	CTAG	3 cut(s)	216, 369, 387
GlaI	GCGC	1 cut(s)	422
GluI	GCNGC	2 cut(s)	358, 361
GsuI	CTGGAG	1 cut(s)	211
HaeII	RGCGCY	1 cut(s)	424
HaeIII	GGCC	1 cut(s)	109
HapII	CCGG	2 cut(s)	113, 460
HgaI	GACGC	2 cut(s)	338, 555
HhaI	GCGC	1 cut(s)	423
Hin1I	GRCGYC	2 cut(s)	349, 439
Hin6I	GCGC	1 cut(s)	421
HinP1I	GCGC	1 cut(s)	421
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HpaII	CCGG	2 cut(s)	113, 460
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	5 cut(s)	13, 130, 257, 413, 500
Hpy188I	TCNGA	3 cut(s)	43, 77, 274
Hpy188III	TCNNGA	5 cut(s)	33, 167, 216, 317, 342
Hpy8I	GTNNAC	5 cut(s)	13, 130, 257, 413, 500
Hpy99I	CGWCG	4 cut(s)	131, 354, 444, 549
HpyAV	CCTTC	2 cut(s)	339, 532
HpyCH4III	ACNGT	1 cut(s)	497
HpyCH4IV	ACGT	4 cut(s)	15, 259, 415, 439
HpyCH4V	TGCA	2 cut(s)	101, 521
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 186, 402
HpySE526I	ACGT	4 cut(s)	15, 259, 415, 439
Hsp92I	GRCGYC	2 cut(s)	349, 439
HspAI	GCGC	1 cut(s)	421
Kzo9I	GATC	1 cut(s)	541
LmnI	GCTCC	2 cut(s)	49, 402
Lsp1109I	GCAGC	1 cut(s)	372
LweI	GCATC	2 cut(s)	139, 148
MaeI	CTAG	3 cut(s)	216, 369, 387
MaeII	ACGT	4 cut(s)	15, 259, 415, 439
MalI	GATC	1 cut(s)	543
MboI	GATC	1 cut(s)	541
MboII	GAAGA	1 cut(s)	68
MhlI	GDGCHC	2 cut(s)	54, 471
MluCI	AATT	2 cut(s)	70, 170
MnlI	CCTC	7 cut(s)	37, 99, 148, 212, 239, 242, 393
MspI	CCGG	2 cut(s)	113, 460
MspR9I	CCNGG	4 cut(s)	114, 303, 460, 461
Mva1269I	GAATGC	1 cut(s)	326
MvaI	CCWGG	1 cut(s)	303
MvnI	CGCG	1 cut(s)	9
MwoI	GCNNNNNNNGC	3 cut(s)	158, 186, 402
NciI	CCSGG	3 cut(s)	114, 460, 461
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	1 cut(s)	541
NmeAIII	GCCGAG	2 cut(s)	170, 178
PaeR7I	CTCGAG	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	1 cut(s)	322
PctI	GAATGC	1 cut(s)	326
PflMI	CCANNNNNTGG	1 cut(s)	497
PkrI	GCNGC	2 cut(s)	359, 362
PmaCI	CACGTG	1 cut(s)	416
PmlI	CACGTG	1 cut(s)	416
Ppu21I	YACGTR	1 cut(s)	416
Psp124BI	GAGCTC	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	301
PspCI	CACGTG	1 cut(s)	416
PspGI	CCWGG	1 cut(s)	301
SacI	GAGCTC	1 cut(s)	54
SalI	GTCGAC	1 cut(s)	128
SatI	GCNGC	2 cut(s)	358, 361
Sau3AI	GATC	1 cut(s)	541
ScrFI	CCNGG	4 cut(s)	114, 303, 460, 461
SduI	GDGCHC	2 cut(s)	54, 471
SfaNI	GCATC	2 cut(s)	139, 148
SfcI	CTRYAG	1 cut(s)	406
Sfr274I	CTCGAG	1 cut(s)	33
SlaI	CTCGAG	1 cut(s)	33
SmaI	CCCGGG	1 cut(s)	461
SmlI	CTYRAG	2 cut(s)	25, 33
SmoI	CTYRAG	2 cut(s)	25, 33
Sse9I	AATT	2 cut(s)	70, 170
SsiI	CCGC	2 cut(s)	243, 358
SspMI	CTAG	3 cut(s)	216, 369, 387
SstI	GAGCTC	1 cut(s)	54
StyD4I	CCNGG	4 cut(s)	112, 301, 458, 459
TaaI	ACNGT	1 cut(s)	497
TaiI	ACGT	4 cut(s)	18, 262, 418, 442
TaqI	TCGA	4 cut(s)	34, 54, 129, 544
TasI	AATT	2 cut(s)	70, 170
TauI	GCSGC	1 cut(s)	360
TseI	GCWGC	1 cut(s)	360
TspMI	CCCGGG	1 cut(s)	459
Van91I	CCANNNNNTGG	1 cut(s)	497
XbaI	TCTAGA	1 cut(s)	215
XhoI	CTCGAG	1 cut(s)	33
XmaI	CCCGGG	1 cut(s)	459
XmiI	GTMKAC	2 cut(s)	12, 129
XspI	CTAG	3 cut(s)	216, 369, 387
ZraI	GACGTC	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.