Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0010800

Physical Location & Seq

Genomic Coordinates Reverse (-)

5292601 .. 5296447

Gene Structure 3847 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010911

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGGAATTAGAGATGGAGACAACATATTCAGCTTTGCAAGAAAGGGTTTCTCTCTTAAAAAAGATTTCAATCGAGGAAGAATGTCTCGTGTCTACGTTGGGAACTTGAGTTCTCGAGTTTCGGAGGGGGAGCTCGAAGATGAGTTTCGCAATTTCGGAGTTATAAGAAGTGTGTGGGTTGCAAGGAGGCCACCGGGTTATGCTTTCGTCGACTTTGATGACAGCCGAGATGCCGAGGATGCCATTCGTGAATTGGATGGCAAGAATGGCTGGAGAGTTGAGCTTTCACACAATTCTAGAGGTGGTGGTGGTGGTGGTCGTGGGGGAGGAGGTCGTGGACGTTCTGGCGGTTCTGATTTGAAGTGCTACGAGTGTGGTGAGCCAGGTCATTTTGCTCGTGAATGCCGTCTGCGTGGTGGTTCTGGAAGGCGTCGTAGCCGCAGCCCACCTAGATATCGCAGAAGTCCTAGCTATGGCAGGAGGAGCTATAGTCCACGTGGGCGCTCTCCCCCACCCAGACGTCGCAGTTTGACACCACCCCGGGGTGGGCACAGCCGTAGCAGGTCTCCACCATACCGTGGACGGGACGAGTTGCCATATGCAAATGGTAATGGCTTGAAGGATCGACGCAGAAGCAGGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

215

Amino Acids

24.01

Weight (kDa)

11.33

Isoelectric Point (pI)

92.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	31 - 88	5.1e-17	RNA recognition motif
zf-CCHC	PF00098	121 - 136	1.3e-07	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24590
fragaria_vesca	FvH4_2g36630 FvH4_2g36630
malus_domestica	MD08G1126400.v1.1 MD15G1106100.v1.1
prunus_persica	Prupe.1G458000_v2.0.a1 Prupe.1G458000_v2.0.a1 Prupe.1G458000_v2.0.a1 Prupe.1G458000_v2.0.a1
pyrus_communis	pycom08g10560
rosa_chinensis	RchiOBHm_Chr6g0305171
rosa_laevigata	RLG00000010911
rosa_roxburghii	Rroxscaffold_7G00163080
rosa_rugosa	Rorug06G0338300
rosa_samantha	Rh2AG066100 Rh6AG449900 Rh6BG451500 Rh6CG463600 Rh6DG450500
rosa_wichuraiana	Rw6G039190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	164
AatII	GACGTC	1 cut(s)	523
Acc36I	ACCTGC	1 cut(s)	552
AccB7I	CCANNNNNTGG	1 cut(s)	578
AccI	GTMKAC	2 cut(s)	93, 210
AciI	CCGC	2 cut(s)	348, 439
AclWI	GGATC	1 cut(s)	630
AcvI	CACGTG	1 cut(s)	497
AcyI	GRCGYC	2 cut(s)	430, 520
AfiI	CCNNNNNNNGG	6 cut(s)	473, 542, 545, 546, 578, 583
AgsI	TTSAA	3 cut(s)	70, 361, 619
AjnI	CCWGG	1 cut(s)	382
AloI	GAACNNNNNNTCC	2 cut(s)	94, 126
AluBI	AGCT	5 cut(s)	33, 133, 283, 471, 486
AluI	AGCT	5 cut(s)	33, 133, 283, 471, 486
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	3 cut(s)	12, 90, 570
AlwI	GGATC	1 cut(s)	630
Ama87I	CYCGRG	2 cut(s)	114, 540
AoxI	GGCC	1 cut(s)	188
ApeKI	GCWGC	1 cut(s)	441
AspLEI	GCGC	1 cut(s)	504
AsuC2I	CCSGG	3 cut(s)	195, 541, 542
AsuHPI	GGTGA	1 cut(s)	389
AvaI	CYCGRG	2 cut(s)	114, 540
BaeGI	GKGCMC	1 cut(s)	552
BanII	GRGCYC	1 cut(s)	135
BauI	CACGAG	2 cut(s)	87, 396
BbrPI	CACGTG	1 cut(s)	497
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	453
BccI	CCATC	2 cut(s)	8, 251
BceAI	ACGGC	2 cut(s)	390, 540
BciT130I	CCWGG	1 cut(s)	384
BcnI	CCSGG	3 cut(s)	195, 541, 542
BcoDI	GTCTC	3 cut(s)	12, 90, 570
BfaI	CTAG	3 cut(s)	297, 450, 468
BfmI	CTRYAG	1 cut(s)	487
BfoI	RGCGCY	1 cut(s)	505
BfuAI	ACCTGC	1 cut(s)	552
BisI	GCNGC	2 cut(s)	439, 442
BlsI	GCNGC	2 cut(s)	440, 443
Bme1390I	CCNGG	4 cut(s)	195, 384, 541, 542
BmeT110I	CYCGRG	2 cut(s)	114, 540
BmrFI	CCNGG	4 cut(s)	195, 384, 541, 542
BmsI	GCATC	2 cut(s)	220, 229
BpmI	CTGGAG	1 cut(s)	292
BpuEI	CTTGAG	1 cut(s)	127
BpuMI	CCSGG	3 cut(s)	195, 541, 542
BsaAI	YACGTR	1 cut(s)	497
BsaBI	GATNNNNATC	1 cut(s)	69
BsaHI	GRCGYC	2 cut(s)	430, 520
BsaI	GGTCTC	1 cut(s)	570
BsaJI	CCNNGG	5 cut(s)	234, 539, 540, 541, 577
BsaXI	ACNNNNNCTCC	2 cut(s)	475, 505
Bsc4I	CCNNNNNNNGG	6 cut(s)	473, 542, 545, 546, 578, 583
Bse8I	GATNNNNATC	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	5 cut(s)	234, 539, 540, 541, 577
BseGI	GGATG	2 cut(s)	244, 262
BseJI	GATNNNNATC	1 cut(s)	69
BseLI	CCNNNNNNNGG	6 cut(s)	473, 542, 545, 546, 578, 583
BseRI	GAGGAG	2 cut(s)	342, 496
BseSI	GKGCMC	1 cut(s)	552
BseXI	GCAGC	1 cut(s)	453
BshFI	GGCC	1 cut(s)	190
BsiHKAI	GWGCWC	1 cut(s)	135
BsiHKCI	CYCGRG	2 cut(s)	114, 540
BsiSI	CCGG	2 cut(s)	194, 541
BslFI	GGGAC	1 cut(s)	599
BslI	CCNNNNNNNGG	6 cut(s)	473, 542, 545, 546, 578, 583
BsmAI	GTCTC	3 cut(s)	12, 90, 570
BsmFI	GGGAC	1 cut(s)	599
BsmI	GAATGC	1 cut(s)	407
BsnI	GGCC	1 cut(s)	190
Bso31I	GGTCTC	1 cut(s)	570
BsoBI	CYCGRG	2 cut(s)	114, 540
Bsp1286I	GDGCHC	2 cut(s)	135, 552
Bsp143I	GATC	1 cut(s)	622
BspACI	CCGC	2 cut(s)	348, 439
BspANI	GGCC	1 cut(s)	190
BspMI	ACCTGC	1 cut(s)	552
BspPI	GGATC	1 cut(s)	630
BspTNI	GGTCTC	1 cut(s)	570
BssECI	CCNNGG	5 cut(s)	234, 539, 540, 541, 577
BssMI	GATC	1 cut(s)	622
BssNI	GRCGYC	2 cut(s)	430, 520
BssSI	CACGAG	2 cut(s)	87, 396
Bst2BI	CACGAG	2 cut(s)	87, 396
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	1 cut(s)	578
BstACI	GRCGYC	2 cut(s)	430, 520
BstBAI	YACGTR	1 cut(s)	497
BstDSI	CCRYGG	1 cut(s)	577
BstF5I	GGATG	2 cut(s)	244, 262
BstH2I	RGCGCY	1 cut(s)	505
BstHHI	GCGC	1 cut(s)	504
BstKTI	GATC	1 cut(s)	625
BstMAI	GTCTC	3 cut(s)	12, 90, 570
BstMBI	GATC	1 cut(s)	622
BstMWI	GCNNNNNNNGC	3 cut(s)	239, 267, 483
BstNI	CCWGG	1 cut(s)	384
BstSCI	CCNGG	4 cut(s)	193, 382, 539, 540
BstSFI	CTRYAG	1 cut(s)	487
BstSLI	GKGCMC	1 cut(s)	552
BstV1I	GCAGC	1 cut(s)	453
BsuRI	GGCC	1 cut(s)	190
BtgI	CCRYGG	1 cut(s)	577
BtsCI	GGATG	2 cut(s)	244, 262
BveI	ACCTGC	1 cut(s)	552
CfoI	GCGC	1 cut(s)	504
Cfr9I	CCCGGG	1 cut(s)	540
CseI	GACGC	2 cut(s)	419, 636
DpnI	GATC	1 cut(s)	624
DpnII	GATC	1 cut(s)	622
Ecl136II	GAGCTC	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	570
Eco32I	GATATC	1 cut(s)	455
Eco53kI	GAGCTC	1 cut(s)	133
Eco72I	CACGTG	1 cut(s)	497
Eco88I	CYCGRG	2 cut(s)	114, 540
EcoICRI	GAGCTC	1 cut(s)	133
EcoRII	CCWGG	1 cut(s)	382
EcoRV	GATATC	1 cut(s)	455
EcoT38I	GRGCYC	1 cut(s)	135
FaiI	YATR	8 cut(s)	26, 164, 201, 474, 489, 574, 598, 600
FaqI	GGGAC	1 cut(s)	599
FauNDI	CATATG	1 cut(s)	598
FblI	GTMKAC	2 cut(s)	93, 210
Fnu4HI	GCNGC	2 cut(s)	439, 442
FokI	GGATG	2 cut(s)	251, 269
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	2 cut(s)	439, 442
FspBI	CTAG	3 cut(s)	297, 450, 468
GlaI	GCGC	1 cut(s)	503
GluI	GCNGC	2 cut(s)	439, 442
GsuI	CTGGAG	1 cut(s)	292
HaeII	RGCGCY	1 cut(s)	505
HaeIII	GGCC	1 cut(s)	190
HapII	CCGG	2 cut(s)	194, 541
HgaI	GACGC	2 cut(s)	419, 636
HhaI	GCGC	1 cut(s)	504
Hin1I	GRCGYC	2 cut(s)	430, 520
Hin6I	GCGC	1 cut(s)	502
HinP1I	GCGC	1 cut(s)	502
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HpaII	CCGG	2 cut(s)	194, 541
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	5 cut(s)	94, 211, 338, 494, 581
Hpy188I	TCNGA	3 cut(s)	124, 158, 355
Hpy188III	TCNNGA	5 cut(s)	114, 248, 297, 398, 423
Hpy8I	GTNNAC	5 cut(s)	94, 211, 338, 494, 581
Hpy99I	CGWCG	4 cut(s)	212, 435, 525, 630
HpyAV	CCTTC	2 cut(s)	420, 613
HpyCH4III	ACNGT	1 cut(s)	578
HpyCH4IV	ACGT	4 cut(s)	96, 340, 496, 520
HpyCH4V	TGCA	3 cut(s)	38, 182, 602
HpyF10VI	GCNNNNNNNGC	3 cut(s)	239, 267, 483
HpySE526I	ACGT	4 cut(s)	96, 340, 496, 520
Hsp92I	GRCGYC	2 cut(s)	430, 520
HspAI	GCGC	1 cut(s)	502
Kzo9I	GATC	1 cut(s)	622
LmnI	GCTCC	2 cut(s)	130, 483
Lsp1109I	GCAGC	1 cut(s)	453
LweI	GCATC	2 cut(s)	220, 229
MaeI	CTAG	3 cut(s)	297, 450, 468
MaeII	ACGT	4 cut(s)	96, 340, 496, 520
MalI	GATC	1 cut(s)	624
MboI	GATC	1 cut(s)	622
MboII	GAAGA	2 cut(s)	90, 149
MhlI	GDGCHC	2 cut(s)	135, 552
MluCI	AATT	4 cut(s)	6, 151, 251, 292
MnlI	CCTC	8 cut(s)	68, 118, 180, 229, 293, 320, 323, 474
MseI	TTAA	1 cut(s)	57
MspI	CCGG	2 cut(s)	194, 541
MspR9I	CCNGG	4 cut(s)	195, 384, 541, 542
Mva1269I	GAATGC	1 cut(s)	407
MvaI	CCWGG	1 cut(s)	384
MwoI	GCNNNNNNNGC	3 cut(s)	239, 267, 483
NciI	CCSGG	3 cut(s)	195, 541, 542
NdeI	CATATG	1 cut(s)	598
NdeII	GATC	1 cut(s)	622
NmeAIII	GCCGAG	2 cut(s)	251, 259
PaeR7I	CTCGAG	1 cut(s)	114
PcsI	WCGNNNNNNNCGW	1 cut(s)	403
PctI	GAATGC	1 cut(s)	407
PflMI	CCANNNNNTGG	1 cut(s)	578
PkrI	GCNGC	2 cut(s)	440, 443
PmaCI	CACGTG	1 cut(s)	497
PmlI	CACGTG	1 cut(s)	497
Ppu21I	YACGTR	1 cut(s)	497
PsiI	TTATAA	1 cut(s)	164
Psp124BI	GAGCTC	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	382
PspCI	CACGTG	1 cut(s)	497
PspGI	CCWGG	1 cut(s)	382
SacI	GAGCTC	1 cut(s)	135
SalI	GTCGAC	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	2 cut(s)	439, 442
Sau3AI	GATC	1 cut(s)	622
ScrFI	CCNGG	4 cut(s)	195, 384, 541, 542
SduI	GDGCHC	2 cut(s)	135, 552
SfaNI	GCATC	2 cut(s)	220, 229
SfcI	CTRYAG	1 cut(s)	487
Sfr274I	CTCGAG	1 cut(s)	114
SlaI	CTCGAG	1 cut(s)	114
SmaI	CCCGGG	1 cut(s)	542
SmlI	CTYRAG	2 cut(s)	106, 114
SmoI	CTYRAG	2 cut(s)	106, 114
Sse9I	AATT	4 cut(s)	6, 151, 251, 292
SsiI	CCGC	2 cut(s)	348, 439
SspMI	CTAG	3 cut(s)	297, 450, 468
SstI	GAGCTC	1 cut(s)	135
StyD4I	CCNGG	4 cut(s)	193, 382, 539, 540
TaaI	ACNGT	1 cut(s)	578
TaiI	ACGT	4 cut(s)	99, 343, 499, 523
TaqI	TCGA	5 cut(s)	73, 115, 135, 210, 625
TasI	AATT	4 cut(s)	6, 151, 251, 292
TauI	GCSGC	1 cut(s)	441
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TseI	GCWGC	1 cut(s)	441
TspMI	CCCGGG	1 cut(s)	540
Van91I	CCANNNNNTGG	1 cut(s)	578
XbaI	TCTAGA	1 cut(s)	296
XcmI	CCANNNNNNNNNTGG	1 cut(s)	250
XhoI	CTCGAG	1 cut(s)	114
XmaI	CCCGGG	1 cut(s)	540
XmiI	GTMKAC	2 cut(s)	93, 210
XspI	CTAG	3 cut(s)	297, 450, 468
ZraI	GACGTC	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.