Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0010800

Physical Location & Seq

Genomic Coordinates Reverse (-)

11881334 .. 11884436

Gene Structure 3103 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1126400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTCTCGTGTGTACGTCGGAAACTTGAGTCCTCGAGTGTCCGAGGGAGAGCTCGAAGACGAGTTTCGTGTTTTTGGAAATATTAGAAGCGTGTGGGTTGCTCGGAGACCACCGGGTTACGCTTTTGTTGACTTCGATGACAGTAGAGATGCAGAGGATGCAATCCGTGAATTAGATGGTAAGAATAACTGGAGAGTTGAGCTTTCACACAACTCTAGAGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTCGTGGTGGAGGTGGTCGTGGCCGCTCTGGCGGTTCTGATTTGAAGTGCTATGAGTGTGGTGAGCCTGGCCATTTTGCTCGTGAATGTCGTCTACGTGGTGGTGGTGGTGGAGGTGGTGGTGGAAGGCGTCGTAGCCGCACTCCCCCTCGCTATCGCAGAAGTCCTAGTTATGGTCGCAGGAGCTACAGTCCTCGTGGGAGATCCCCTAGACGTCGCAGTTTGACACCACGAGGGAATAGCCGCAGCAGGTCCCCACCATACCGTGGGCGGGAGGAGTTGCCATATGCCAATGGCAATGGTCTAAAGGATCGCCGCCGAAGCAGGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031503 GO:0031974 GO:0031981 GO:0033036 GO:0033119 GO:0034613 GO:0034641 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0045934 GO:0046483 GO:0046907 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050657 GO:0050658 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051253 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

193

Amino Acids

21.1

Weight (kDa)

11.3

Isoelectric Point (pI)

103.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	4 - 61	9.2e-17	RNA recognition motif
zf-CCHC	PF00098	98 - 113	1.1e-07	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24590
fragaria_vesca	FvH4_2g36630 FvH4_2g36630
malus_domestica	MD08G1126400.v1.1 MD15G1106100.v1.1
prunus_persica	Prupe.1G458000_v2.0.a1 Prupe.1G458000_v2.0.a1 Prupe.1G458000_v2.0.a1 Prupe.1G458000_v2.0.a1
pyrus_communis	pycom08g10560
rosa_chinensis	RchiOBHm_Chr6g0305171
rosa_laevigata	RLG00000010911
rosa_roxburghii	Rroxscaffold_7G00163080
rosa_rugosa	Rorug06G0338300
rosa_samantha	Rh2AG066100 Rh6AG449900 Rh6BG451500 Rh6CG463600 Rh6DG450500
rosa_wichuraiana	Rw6G039190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	463
Acc36I	ACCTGC	1 cut(s)	486
AccB7I	CCANNNNNTGG	1 cut(s)	512
AccBSI	CCGCTC	1 cut(s)	273
AccI	GTMKAC	1 cut(s)	340
AciI	CCGC	6 cut(s)	271, 279, 385, 490, 517, 562
AclWI	GGATC	2 cut(s)	444, 564
AcoI	YGGCCR	2 cut(s)	268, 316
AcyI	GRCGYC	2 cut(s)	376, 460
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	3 cut(s)	419, 512, 517
AgsI	TTSAA	1 cut(s)	292
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	3 cut(s)	52, 202, 432
AluI	AGCT	3 cut(s)	52, 202, 432
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	2 cut(s)	9, 100
AlwI	GGATC	2 cut(s)	444, 564
Ama87I	CYCGRG	1 cut(s)	33
AoxI	GGCC	2 cut(s)	268, 316
ApeKI	GCWGC	1 cut(s)	492
AspS9I	GGNCC	1 cut(s)	498
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	320
AvaI	CYCGRG	1 cut(s)	33
AvaII	GGWCC	1 cut(s)	498
BalI	TGGCCA	1 cut(s)	318
BanII	GRGCYC	1 cut(s)	54
BauI	CACGAG	4 cut(s)	6, 327, 441, 477
BbsI	GAAGAC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	504
BccI	CCATC	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	315
BcnI	CCSGG	1 cut(s)	114
BcoDI	GTCTC	2 cut(s)	9, 100
BfaI	CTAG	3 cut(s)	216, 414, 456
BfmI	CTRYAG	1 cut(s)	433
BfuAI	ACCTGC	1 cut(s)	486
BglI	GCCNNNNNGGC	1 cut(s)	276
BisI	GCNGC	5 cut(s)	271, 385, 490, 493, 562
BlsI	GCNGC	5 cut(s)	272, 386, 491, 494, 563
Bme1390I	CCNGG	2 cut(s)	114, 315
Bme18I	GGWCC	1 cut(s)	498
BmeT110I	CYCGRG	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	498
BmiI	GGNNCC	1 cut(s)	500
BmrFI	CCNGG	2 cut(s)	114, 315
BmsI	GCATC	2 cut(s)	139, 148
BpiI	GAAGAC	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	211
BpuEI	CTTGAG	1 cut(s)	46
BpuMI	CCSGG	1 cut(s)	114
BsaAI	YACGTR	1 cut(s)	344
BsaHI	GRCGYC	2 cut(s)	376, 460
BsaI	GGTCTC	1 cut(s)	100
BsaJI	CCNNGG	2 cut(s)	42, 511
BsaXI	ACNNNNNCTCC	2 cut(s)	421, 451
Bsc4I	CCNNNNNNNGG	3 cut(s)	419, 512, 517
Bse1I	ACTGG	1 cut(s)	194
Bse3DI	GCAATG	1 cut(s)	550
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	2 cut(s)	42, 511
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	3 cut(s)	419, 512, 517
BseMI	GCAATG	1 cut(s)	550
BseNI	ACTGG	1 cut(s)	194
BseRI	GAGGAG	1 cut(s)	536
BseXI	GCAGC	1 cut(s)	504
BshFI	GGCC	2 cut(s)	270, 318
BsiHKAI	GWGCWC	1 cut(s)	54
BsiHKCI	CYCGRG	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	113
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	3 cut(s)	419, 512, 517
BsmAI	GTCTC	2 cut(s)	9, 100
BsmFI	GGGAC	1 cut(s)	484
BsnI	GGCC	2 cut(s)	270, 318
Bso31I	GGTCTC	1 cut(s)	100
BsoBI	CYCGRG	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	2 cut(s)	449, 556
BspACI	CCGC	6 cut(s)	271, 279, 385, 490, 517, 562
BspANI	GGCC	2 cut(s)	270, 318
BspLI	GGNNCC	1 cut(s)	500
BspMI	ACCTGC	1 cut(s)	486
BspPI	GGATC	2 cut(s)	444, 564
BspTNI	GGTCTC	1 cut(s)	100
BsrBI	CCGCTC	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	550
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	2 cut(s)	42, 511
BssMI	GATC	2 cut(s)	449, 556
BssNI	GRCGYC	2 cut(s)	376, 460
BssSI	CACGAG	4 cut(s)	6, 327, 441, 477
Bst2BI	CACGAG	4 cut(s)	6, 327, 441, 477
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	3 cut(s)	143, 437, 512
BstACI	GRCGYC	2 cut(s)	376, 460
BstAPI	GCANNNNNTGC	1 cut(s)	158
BstBAI	YACGTR	1 cut(s)	344
BstDSI	CCRYGG	1 cut(s)	511
BstF5I	GGATG	1 cut(s)	163
BstKTI	GATC	2 cut(s)	452, 559
BstMAI	GTCTC	2 cut(s)	9, 100
BstMBI	GATC	2 cut(s)	449, 556
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 276, 567
BstNI	CCWGG	1 cut(s)	315
BstSCI	CCNGG	2 cut(s)	112, 313
BstSFI	CTRYAG	1 cut(s)	433
BstV1I	GCAGC	1 cut(s)	504
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	449
BstYI	RGATCY	1 cut(s)	449
BsuRI	GGCC	2 cut(s)	270, 318
BtgI	CCRYGG	1 cut(s)	511
BtsCI	GGATG	1 cut(s)	163
BveI	ACCTGC	1 cut(s)	486
Cfr13I	GGNCC	1 cut(s)	498
CseI	GACGC	1 cut(s)	365
Csp6I	GTAC	1 cut(s)	13
CviJI	RGCY	8 cut(s)	52, 202, 270, 313, 318, 384, 432, 489
CviKI_1	RGCY	8 cut(s)	52, 202, 270, 313, 318, 384, 432, 489
CviQI	GTAC	1 cut(s)	13
DpnI	GATC	2 cut(s)	451, 558
DpnII	GATC	2 cut(s)	449, 556
EaeI	YGGCCR	2 cut(s)	268, 316
Ecl136II	GAGCTC	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	54
Eco31I	GGTCTC	1 cut(s)	100
Eco47I	GGWCC	1 cut(s)	498
Eco53kI	GAGCTC	1 cut(s)	52
Eco88I	CYCGRG	1 cut(s)	33
EcoICRI	GAGCTC	1 cut(s)	52
EcoO109I	RGGNCCY	1 cut(s)	498
EcoRII	CCWGG	1 cut(s)	313
EcoT38I	GRGCYC	1 cut(s)	54
FaiI	YATR	5 cut(s)	300, 420, 508, 532, 534
FaqI	GGGAC	1 cut(s)	484
FauI	CCCGC	1 cut(s)	510
FauNDI	CATATG	1 cut(s)	532
FblI	GTMKAC	1 cut(s)	340
Fnu4HI	GCNGC	5 cut(s)	271, 385, 490, 493, 562
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	5 cut(s)	271, 385, 490, 493, 562
FspBI	CTAG	3 cut(s)	216, 414, 456
GluI	GCNGC	5 cut(s)	271, 385, 490, 493, 562
GsuI	CTGGAG	1 cut(s)	211
HaeIII	GGCC	2 cut(s)	270, 318
HapII	CCGG	1 cut(s)	113
HgaI	GACGC	1 cut(s)	365
Hin1I	GRCGYC	2 cut(s)	376, 460
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	3 cut(s)	13, 130, 341
Hpy188I	TCNGA	4 cut(s)	20, 43, 105, 286
Hpy188III	TCNNGA	2 cut(s)	216, 329
Hpy8I	GTNNAC	3 cut(s)	13, 130, 341
Hpy99I	CGWCG	3 cut(s)	20, 381, 465
HpyAV	CCTTC	1 cut(s)	366
HpyCH4III	ACNGT	3 cut(s)	143, 437, 512
HpyCH4IV	ACGT	3 cut(s)	15, 343, 460
HpyCH4V	TGCA	2 cut(s)	152, 161
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 276, 567
HpySE526I	ACGT	3 cut(s)	15, 343, 460
Hsp92I	GRCGYC	2 cut(s)	376, 460
Kzo9I	GATC	2 cut(s)	449, 556
LmnI	GCTCC	1 cut(s)	429
LpnPI	CCDG	8 cut(s)	126, 175, 261, 300, 327, 412, 481, 556
Lsp1109I	GCAGC	1 cut(s)	504
LweI	GCATC	2 cut(s)	139, 148
MaeI	CTAG	3 cut(s)	216, 414, 456
MaeII	ACGT	3 cut(s)	15, 343, 460
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	2 cut(s)	451, 558
MbiI	CCGCTC	1 cut(s)	273
MboI	GATC	2 cut(s)	449, 556
MboII	GAAGA	1 cut(s)	68
MflI	RGATCY	1 cut(s)	449
MhlI	GDGCHC	1 cut(s)	54
MlsI	TGGCCA	1 cut(s)	318
MluCI	AATT	1 cut(s)	170
MluNI	TGGCCA	1 cut(s)	318
MlyI	GAGTC	1 cut(s)	37
Mox20I	TGGCCA	1 cut(s)	318
MscI	TGGCCA	1 cut(s)	318
MseI	TTAA	1 cut(s)	577
Msp20I	TGGCCA	1 cut(s)	318
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	2 cut(s)	114, 315
MvaI	CCWGG	1 cut(s)	315
MwoI	GCNNNNNNNGC	3 cut(s)	158, 276, 567
NciI	CCSGG	1 cut(s)	114
NdeI	CATATG	1 cut(s)	532
NdeII	GATC	2 cut(s)	449, 556
NlaIV	GGNNCC	1 cut(s)	500
PaeR7I	CTCGAG	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	1 cut(s)	334
PflMI	CCANNNNNTGG	1 cut(s)	512
PkrI	GCNGC	5 cut(s)	272, 386, 491, 494, 563
PleI	GAGTC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	36
Ppu21I	YACGTR	1 cut(s)	344
PpuMI	RGGWCCY	1 cut(s)	498
Psp124BI	GAGCTC	1 cut(s)	54
Psp5II	RGGWCCY	1 cut(s)	498
Psp6I	CCWGG	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	1 cut(s)	500
PspPI	GGNCC	1 cut(s)	498
PspPPI	RGGWCCY	1 cut(s)	498
PspXI	VCTCGAGB	1 cut(s)	33
PsuI	RGATCY	1 cut(s)	449
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SacI	GAGCTC	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	577
SatI	GCNGC	5 cut(s)	271, 385, 490, 493, 562
Sau3AI	GATC	2 cut(s)	449, 556
Sau96I	GGNCC	1 cut(s)	498
SchI	GAGTC	1 cut(s)	37
ScrFI	CCNGG	2 cut(s)	114, 315
SduI	GDGCHC	1 cut(s)	54
SfaNI	GCATC	2 cut(s)	139, 148
SfcI	CTRYAG	1 cut(s)	433
Sfr274I	CTCGAG	1 cut(s)	33
SinI	GGWCC	1 cut(s)	498
SlaI	CTCGAG	1 cut(s)	33
SmlI	CTYRAG	2 cut(s)	25, 33
SmoI	CTYRAG	2 cut(s)	25, 33
Sse9I	AATT	1 cut(s)	170
SsiI	CCGC	6 cut(s)	271, 279, 385, 490, 517, 562
SspI	AATATT	1 cut(s)	82
SspMI	CTAG	3 cut(s)	216, 414, 456
SstI	GAGCTC	1 cut(s)	54
StyD4I	CCNGG	2 cut(s)	112, 313
TaaI	ACNGT	3 cut(s)	143, 437, 512
TaiI	ACGT	3 cut(s)	18, 346, 463
TaqI	TCGA	3 cut(s)	34, 54, 135
TasI	AATT	1 cut(s)	170
TauI	GCSGC	4 cut(s)	273, 387, 492, 564
Tru1I	TTAA	1 cut(s)	577
Tru9I	TTAA	1 cut(s)	577
TseI	GCWGC	1 cut(s)	492
TspGWI	ACGGA	1 cut(s)	155
Van91I	CCANNNNNTGG	1 cut(s)	512
VpaK11BI	GGWCC	1 cut(s)	498
XbaI	TCTAGA	1 cut(s)	215
XhoI	CTCGAG	1 cut(s)	33
XmiI	GTMKAC	1 cut(s)	340
XspI	CTAG	3 cut(s)	216, 414, 456
ZraI	GACGTC	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.