Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0010800

Physical Location & Seq

Genomic Coordinates Reverse (-)

7407763 .. 7410298

Gene Structure 2536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1106100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGTCTCGTGTGTACGTCGGAAACTTGAGTCCTCGAGTTTCCGAGGCAGATCTCGAAGACGAGTTTCGTGTTTTTGGAAATATTAGAAGCGTGTGGGTTGCTCGGAGACCACCGGGTTACGCTTTTGTTGACTTTGATGATATCAGAGACGCTGAGGATGCAATCCGTGGATTAGATGGTAAGAATAACTGGAGAGTTGAGCTTTCACACAACTCTAGAGGTGGTGGTGGTGGTCGTGGTGGAGGTGGTCGTGGCCGCTCTGGCGGTTCTGATTTGAAGTGCTATGAGTGTGGTGAGCCTGGGCATTTTGCTCGTGAATGCCGTCTACGTGGTGGTGGTGGTGGTGGTGGTGGTGGAAGGCGTCGTAGCCGCACCCCTCCTCGCTATCGCAGAAGTCCCAGTTATGGTCGCAGGAGCTACAGTCCTCGTGGGAGATCCCCAAGACGTCGCAGTTTGACACCACGTGGGAACAGCCGCAGCAGGTCCCCACCGTACCGTGGGCGGGAGGAGTTGCCTTATGCCAATGGCAATGGTCTGAAGGATCGCCGCCGAAGCAGGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031503 GO:0031974 GO:0031981 GO:0033036 GO:0033119 GO:0034613 GO:0034641 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0045934 GO:0046483 GO:0046907 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050657 GO:0050658 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051253 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

188

Amino Acids

20.77

Weight (kDa)

11.37

Isoelectric Point (pI)

99.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	4 - 61	1.3e-16	RNA recognition motif
zf-CCHC	PF00098	93 - 108	1e-07	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24590
fragaria_vesca	FvH4_2g36630 FvH4_2g36630
malus_domestica	MD08G1126400.v1.1 MD15G1106100.v1.1
prunus_persica	Prupe.1G458000_v2.0.a1 Prupe.1G458000_v2.0.a1 Prupe.1G458000_v2.0.a1 Prupe.1G458000_v2.0.a1
pyrus_communis	pycom08g10560
rosa_chinensis	RchiOBHm_Chr6g0305171
rosa_laevigata	RLG00000010911
rosa_roxburghii	Rroxscaffold_7G00163080
rosa_rugosa	Rorug06G0338300
rosa_samantha	Rh2AG066100 Rh6AG449900 Rh6BG451500 Rh6CG463600 Rh6DG450500
rosa_wichuraiana	Rw6G039190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	448
Acc36I	ACCTGC	1 cut(s)	471
AccBSI	CCGCTC	1 cut(s)	258
AccI	GTMKAC	1 cut(s)	325
AciI	CCGC	6 cut(s)	256, 264, 370, 475, 502, 547
AclWI	GGATC	2 cut(s)	429, 549
AcoI	YGGCCR	1 cut(s)	253
AcuI	CTGAAG	1 cut(s)	557
AcvI	CACGTG	1 cut(s)	464
AcyI	GRCGYC	2 cut(s)	361, 445
AdeI	CACNNNGTG	1 cut(s)	464
AfaI	GTAC	2 cut(s)	14, 494
AfiI	CCNNNNNNNGG	3 cut(s)	404, 497, 502
AgsI	TTSAA	1 cut(s)	277
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	2 cut(s)	202, 417
AluI	AGCT	2 cut(s)	202, 417
Alw26I	GTCTC	3 cut(s)	9, 100, 141
AlwI	GGATC	2 cut(s)	429, 549
Ama87I	CYCGRG	1 cut(s)	33
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	1 cut(s)	477
AspS9I	GGNCC	1 cut(s)	483
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	305
AvaI	CYCGRG	1 cut(s)	33
AvaII	GGWCC	1 cut(s)	483
BauI	CACGAG	3 cut(s)	6, 312, 426
BbrPI	CACGTG	1 cut(s)	464
BbsI	GAAGAC	1 cut(s)	63
BbvCI	CCTCAGC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	489
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	1 cut(s)	306
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BciT130I	CCWGG	1 cut(s)	300
BcnI	CCSGG	1 cut(s)	114
BcoDI	GTCTC	3 cut(s)	9, 100, 141
BfaI	CTAG	1 cut(s)	216
BfmI	CTRYAG	1 cut(s)	418
BfuAI	ACCTGC	1 cut(s)	471
BglI	GCCNNNNNGGC	1 cut(s)	261
BglII	AGATCT	1 cut(s)	49
BisI	GCNGC	5 cut(s)	256, 370, 475, 478, 547
BlsI	GCNGC	5 cut(s)	257, 371, 476, 479, 548
Bme1390I	CCNGG	2 cut(s)	114, 300
Bme18I	GGWCC	1 cut(s)	483
BmeT110I	CYCGRG	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	483
BmiI	GGNNCC	1 cut(s)	485
BmrFI	CCNGG	2 cut(s)	114, 300
BmrI	ACTGGG	1 cut(s)	393
BmsI	GCATC	1 cut(s)	148
BmuI	ACTGGG	1 cut(s)	393
BpiI	GAAGAC	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	211
Bpu10I	CCTNAGC	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	46
BpuMI	CCSGG	1 cut(s)	114
BsaAI	YACGTR	2 cut(s)	329, 464
BsaHI	GRCGYC	2 cut(s)	361, 445
BsaI	GGTCTC	1 cut(s)	100
BsaJI	CCNNGG	4 cut(s)	42, 166, 299, 496
BsaXI	ACNNNNNCTCC	2 cut(s)	406, 436
Bsc4I	CCNNNNNNNGG	3 cut(s)	404, 497, 502
Bse1I	ACTGG	2 cut(s)	194, 399
Bse3DI	GCAATG	1 cut(s)	535
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	4 cut(s)	42, 166, 299, 496
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	3 cut(s)	404, 497, 502
BseMI	GCAATG	1 cut(s)	535
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	2 cut(s)	194, 399
BseRI	GAGGAG	2 cut(s)	369, 521
BseXI	GCAGC	1 cut(s)	489
BshFI	GGCC	1 cut(s)	255
BsiHKCI	CYCGRG	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	113
BslFI	GGGAC	2 cut(s)	381, 469
BslI	CCNNNNNNNGG	3 cut(s)	404, 497, 502
BsmAI	GTCTC	3 cut(s)	9, 100, 141
BsmBI	CGTCTC	1 cut(s)	141
BsmFI	GGGAC	2 cut(s)	381, 469
BsmI	GAATGC	1 cut(s)	323
BsnI	GGCC	1 cut(s)	255
Bso31I	GGTCTC	1 cut(s)	100
BsoBI	CYCGRG	1 cut(s)	33
Bsp143I	GATC	3 cut(s)	49, 434, 541
BspACI	CCGC	6 cut(s)	256, 264, 370, 475, 502, 547
BspANI	GGCC	1 cut(s)	255
BspCNI	CTCAG	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	485
BspMI	ACCTGC	1 cut(s)	471
BspPI	GGATC	2 cut(s)	429, 549
BspTNI	GGTCTC	1 cut(s)	100
BsrBI	CCGCTC	1 cut(s)	258
BsrDI	GCAATG	1 cut(s)	535
BsrI	ACTGG	2 cut(s)	194, 399
BssECI	CCNNGG	4 cut(s)	42, 166, 299, 496
BssMI	GATC	3 cut(s)	49, 434, 541
BssNI	GRCGYC	2 cut(s)	361, 445
BssSI	CACGAG	3 cut(s)	6, 312, 426
Bst2BI	CACGAG	3 cut(s)	6, 312, 426
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	3 cut(s)	422, 492, 497
BstACI	GRCGYC	2 cut(s)	361, 445
BstBAI	YACGTR	2 cut(s)	329, 464
BstDEI	CTNAG	1 cut(s)	153
BstDSI	CCRYGG	2 cut(s)	166, 496
BstF5I	GGATG	1 cut(s)	163
BstKTI	GATC	3 cut(s)	52, 437, 544
BstMAI	GTCTC	3 cut(s)	9, 100, 141
BstMBI	GATC	3 cut(s)	49, 434, 541
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 261, 552
BstNI	CCWGG	1 cut(s)	300
BstSCI	CCNGG	2 cut(s)	112, 298
BstSFI	CTRYAG	1 cut(s)	418
BstV1I	GCAGC	1 cut(s)	489
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	2 cut(s)	49, 434
BstYI	RGATCY	2 cut(s)	49, 434
BsuRI	GGCC	1 cut(s)	255
BtgI	CCRYGG	2 cut(s)	166, 496
BtsCI	GGATG	1 cut(s)	163
BveI	ACCTGC	1 cut(s)	471
Cfr13I	GGNCC	1 cut(s)	483
CseI	GACGC	2 cut(s)	158, 350
Csp6I	GTAC	2 cut(s)	13, 493
CviJI	RGCY	6 cut(s)	202, 255, 298, 369, 417, 474
CviKI_1	RGCY	6 cut(s)	202, 255, 298, 369, 417, 474
CviQI	GTAC	2 cut(s)	13, 493
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	3 cut(s)	51, 436, 543
DpnII	GATC	3 cut(s)	49, 434, 541
DraIII	CACNNNGTG	1 cut(s)	464
EaeI	YGGCCR	1 cut(s)	253
Eco31I	GGTCTC	1 cut(s)	100
Eco32I	GATATC	1 cut(s)	142
Eco47I	GGWCC	1 cut(s)	483
Eco57I	CTGAAG	1 cut(s)	557
Eco72I	CACGTG	1 cut(s)	464
Eco88I	CYCGRG	1 cut(s)	33
EcoO109I	RGGNCCY	1 cut(s)	483
EcoRII	CCWGG	1 cut(s)	298
EcoRV	GATATC	1 cut(s)	142
Esp3I	CGTCTC	1 cut(s)	141
FaiI	YATR	3 cut(s)	285, 405, 519
FaqI	GGGAC	2 cut(s)	381, 469
FauI	CCCGC	1 cut(s)	495
FblI	GTMKAC	1 cut(s)	325
Fnu4HI	GCNGC	5 cut(s)	256, 370, 475, 478, 547
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	5 cut(s)	256, 370, 475, 478, 547
FspBI	CTAG	1 cut(s)	216
GluI	GCNGC	5 cut(s)	256, 370, 475, 478, 547
GsuI	CTGGAG	1 cut(s)	211
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	1 cut(s)	113
HgaI	GACGC	2 cut(s)	158, 350
Hin1I	GRCGYC	2 cut(s)	361, 445
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	3 cut(s)	13, 130, 326
Hpy188I	TCNGA	6 cut(s)	20, 43, 105, 146, 271, 537
Hpy188III	TCNNGA	3 cut(s)	53, 216, 314
Hpy8I	GTNNAC	3 cut(s)	13, 130, 326
Hpy99I	CGWCG	3 cut(s)	20, 366, 450
HpyAV	CCTTC	2 cut(s)	351, 532
HpyCH4III	ACNGT	3 cut(s)	422, 492, 497
HpyCH4IV	ACGT	4 cut(s)	15, 328, 445, 463
HpyCH4V	TGCA	1 cut(s)	161
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 261, 552
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	4 cut(s)	15, 328, 445, 463
Hsp92I	GRCGYC	2 cut(s)	361, 445
Kzo9I	GATC	3 cut(s)	49, 434, 541
LmnI	GCTCC	1 cut(s)	414
LpnPI	CCDG	9 cut(s)	126, 175, 246, 285, 312, 397, 412, 466, 541
Lsp1109I	GCAGC	1 cut(s)	489
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	4 cut(s)	15, 328, 445, 463
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	3 cut(s)	51, 436, 543
MbiI	CCGCTC	1 cut(s)	258
MboI	GATC	3 cut(s)	49, 434, 541
MboII	GAAGA	1 cut(s)	68
MflI	RGATCY	2 cut(s)	49, 434
MlyI	GAGTC	1 cut(s)	37
MnlI	CCTC	9 cut(s)	37, 42, 148, 212, 236, 387, 390, 435, 499
MseI	TTAA	1 cut(s)	562
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	2 cut(s)	114, 300
Mva1269I	GAATGC	1 cut(s)	323
MvaI	CCWGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	3 cut(s)	158, 261, 552
NciI	CCSGG	1 cut(s)	114
NdeII	GATC	3 cut(s)	49, 434, 541
NlaIV	GGNNCC	1 cut(s)	485
PaeR7I	CTCGAG	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	1 cut(s)	319
PctI	GAATGC	1 cut(s)	323
PkrI	GCNGC	5 cut(s)	257, 371, 476, 479, 548
PleI	GAGTC	1 cut(s)	36
PmaCI	CACGTG	1 cut(s)	464
PmlI	CACGTG	1 cut(s)	464
PpsI	GAGTC	1 cut(s)	36
Ppu21I	YACGTR	2 cut(s)	329, 464
PpuMI	RGGWCCY	1 cut(s)	483
Psp5II	RGGWCCY	1 cut(s)	483
Psp6I	CCWGG	1 cut(s)	298
PspCI	CACGTG	1 cut(s)	464
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	1 cut(s)	485
PspPI	GGNCC	1 cut(s)	483
PspPPI	RGGWCCY	1 cut(s)	483
PspXI	VCTCGAGB	1 cut(s)	33
PsuI	RGATCY	2 cut(s)	49, 434
RsaI	GTAC	2 cut(s)	14, 494
RsaNI	GTAC	2 cut(s)	13, 493
SaqAI	TTAA	1 cut(s)	562
SatI	GCNGC	5 cut(s)	256, 370, 475, 478, 547
Sau3AI	GATC	3 cut(s)	49, 434, 541
Sau96I	GGNCC	1 cut(s)	483
SchI	GAGTC	1 cut(s)	37
ScrFI	CCNGG	2 cut(s)	114, 300
SetI	ASST	9 cut(s)	18, 204, 223, 247, 331, 419, 448, 466, 485
SfaNI	GCATC	1 cut(s)	148
SfcI	CTRYAG	1 cut(s)	418
Sfr274I	CTCGAG	1 cut(s)	33
SinI	GGWCC	1 cut(s)	483
SlaI	CTCGAG	1 cut(s)	33
SmlI	CTYRAG	2 cut(s)	25, 33
SmoI	CTYRAG	2 cut(s)	25, 33
SsiI	CCGC	6 cut(s)	256, 264, 370, 475, 502, 547
SspI	AATATT	1 cut(s)	82
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	2 cut(s)	112, 298
TaaI	ACNGT	3 cut(s)	422, 492, 497
TaiI	ACGT	4 cut(s)	18, 331, 448, 466
TaqI	TCGA	2 cut(s)	34, 54
TauI	GCSGC	4 cut(s)	258, 372, 477, 549
Tru1I	TTAA	1 cut(s)	562
Tru9I	TTAA	1 cut(s)	562
TseI	GCWGC	1 cut(s)	477
TspGWI	ACGGA	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	483
XbaI	TCTAGA	1 cut(s)	215
XhoI	CTCGAG	1 cut(s)	33
XmiI	GTMKAC	1 cut(s)	325
XspI	CTAG	1 cut(s)	216
ZraI	GACGTC	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.