Prupe.1G458000_v2.0.a1

serine arginine-rich splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0010800
Physical Location & Seq
Reverse (-)
38365333 .. 38370141
4809 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G458000.3

Sequence Viewer

Length: 549 bp
ATGTCTCGTGTGTACGTCGGAAATTTGAGCCCTCGAGTTTCCGAGGCAGATCTCGAAGATGAGTTTCGCGTTTTCGGAGTTATAAGAAGTGTATGGGTGGCTCGGAGACCACCAGGCTATGCTTTTGTTGACTTTGATGACAGTAGAGACGCAGAGGATGCAATCCGTGAAATAGATGGTAAGAATGGATGGAGAGTTGAGCTTTCACACAACTCTAGAGGTGGTGGTGGTGGTGGTCGTGGAGGGGGTCGTGGCCGTTCTGGTGGTTCTGATTTGAAGTGCTATGAGTGTGGTGAGCCTGGTCATTTTGCTCGTGAATGTCGTCTGCGGGGTGGTTCTGGAAGACGTCGTAGCCGCAGTCCCCCTCGATACCGTAGAAGCCCTAGTTATGGTCGCAGGAGCTACAGTCCTCGTGGGCGGTCTCCTAGACGTCGCAGTTTGACACCACGTGGGAACAGCCGTAGCAGGTCCCCACCATACCGTGGACGGGAGGAGTTGCCCTATGCCAATGGTAATGGTCTGAAGGATCGTCGCCGAAGCAGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031503 GO:0031974 GO:0031981 GO:0033036 GO:0033119 GO:0034613 GO:0034641 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0045934 GO:0046483 GO:0046907 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050657 GO:0050658 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051253 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903312
KEGG Pathways
Metabolic & Signaling
ko03040 ko05168 map03040 map05168
Pfam Domains
Protein Families
RRM_1 zf-CCHC

Protein Analysis

183

Amino Acids

20.48

Weight (kDa)

11.3

Isoelectric Point (pI)

104.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 83
AatII GACGTC 2 cut(s) 349, 433
Acc36I ACCTGC 1 cut(s) 456
AccB7I CCANNNNNTGG 1 cut(s) 482
AccII CGCG 1 cut(s) 69
AciI CCGC 3 cut(s) 328, 355, 418
AclWI GGATC 1 cut(s) 534
AcoI YGGCCR 1 cut(s) 253
AcsI RAATTY 1 cut(s) 22
AcuI CTGAAG 1 cut(s) 542
AcvI CACGTG 1 cut(s) 449
AcyI GRCGYC 2 cut(s) 346, 430
AdeI CACNNNGTG 1 cut(s) 449
AfaI GTAC 1 cut(s) 14
AfiI CCNNNNNNNGG 3 cut(s) 389, 482, 487
AgsI TTSAA 1 cut(s) 277
AjnI CCWGG 2 cut(s) 112, 298
AluBI AGCT 2 cut(s) 202, 402
AluI AGCT 2 cut(s) 202, 402
Alw26I GTCTC 4 cut(s) 9, 100, 141, 426
AlwI GGATC 1 cut(s) 534
Ama87I CYCGRG 1 cut(s) 33
AoxI GGCC 1 cut(s) 253
ApoI RAATTY 1 cut(s) 22
AspS9I GGNCC 1 cut(s) 468
AsuHPI GGTGA 1 cut(s) 305
AvaI CYCGRG 1 cut(s) 33
AvaII GGWCC 1 cut(s) 468
BanII GRGCYC 1 cut(s) 32
BauI CACGAG 3 cut(s) 6, 312, 411
BbrPI CACGTG 1 cut(s) 449
BbsI GAAGAC 1 cut(s) 349
BccI CCATC 2 cut(s) 170, 183
BceAI ACGGC 2 cut(s) 240, 444
BciT130I CCWGG 2 cut(s) 114, 300
BcoDI GTCTC 4 cut(s) 9, 100, 141, 426
BfaI CTAG 3 cut(s) 216, 384, 426
BfmI CTRYAG 1 cut(s) 403
BfuAI ACCTGC 1 cut(s) 456
BglII AGATCT 1 cut(s) 49
BisI GCNGC 1 cut(s) 355
BlsI GCNGC 1 cut(s) 356
Bme1390I CCNGG 2 cut(s) 114, 300
Bme18I GGWCC 1 cut(s) 468
BmeT110I CYCGRG 1 cut(s) 33
BmgT120I GGNCC 1 cut(s) 468
BmiI GGNNCC 1 cut(s) 470
BmrFI CCNGG 2 cut(s) 114, 300
BmsI GCATC 1 cut(s) 148
BpiI GAAGAC 1 cut(s) 349
BsaAI YACGTR 1 cut(s) 449
BsaHI GRCGYC 2 cut(s) 346, 430
BsaI GGTCTC 2 cut(s) 100, 426
BsaJI CCNNGG 2 cut(s) 42, 481
BsaXI ACNNNNNCTCC 2 cut(s) 391, 421
Bsc4I CCNNNNNNNGG 3 cut(s) 389, 482, 487
BseBI CCWGG 2 cut(s) 114, 300
BseDI CCNNGG 2 cut(s) 42, 481
BseGI GGATG 2 cut(s) 163, 194
BseLI CCNNNNNNNGG 3 cut(s) 389, 482, 487
BseRI GAGGAG 1 cut(s) 506
Bsh1236I CGCG 1 cut(s) 69
BshFI GGCC 1 cut(s) 255
BsiHKCI CYCGRG 1 cut(s) 33
BslFI GGGAC 2 cut(s) 345, 454
BslI CCNNNNNNNGG 3 cut(s) 389, 482, 487
BsmAI GTCTC 4 cut(s) 9, 100, 141, 426
BsmBI CGTCTC 1 cut(s) 141
BsmFI GGGAC 2 cut(s) 345, 454
BsnI GGCC 1 cut(s) 255
Bso31I GGTCTC 2 cut(s) 100, 426
BsoBI CYCGRG 1 cut(s) 33
Bsp1286I GDGCHC 1 cut(s) 32
Bsp143I GATC 2 cut(s) 49, 526
BspACI CCGC 3 cut(s) 328, 355, 418
BspANI GGCC 1 cut(s) 255
BspFNI CGCG 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 470
BspMI ACCTGC 1 cut(s) 456
BspPI GGATC 1 cut(s) 534
BspTNI GGTCTC 2 cut(s) 100, 426
BssECI CCNNGG 2 cut(s) 42, 481
BssMI GATC 2 cut(s) 49, 526
BssNI GRCGYC 2 cut(s) 346, 430
BssSI CACGAG 3 cut(s) 6, 312, 411
Bst2BI CACGAG 3 cut(s) 6, 312, 411
Bst2UI CCWGG 2 cut(s) 114, 300
Bst4CI ACNGT 4 cut(s) 143, 374, 407, 482
BstACI GRCGYC 2 cut(s) 346, 430
BstAPI GCANNNNNTGC 1 cut(s) 158
BstBAI YACGTR 1 cut(s) 449
BstDSI CCRYGG 1 cut(s) 481
BstF5I GGATG 2 cut(s) 163, 194
BstFNI CGCG 1 cut(s) 69
BstKTI GATC 2 cut(s) 52, 529
BstMAI GTCTC 4 cut(s) 9, 100, 141, 426
BstMBI GATC 2 cut(s) 49, 526
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNI CCWGG 2 cut(s) 114, 300
BstSCI CCNGG 2 cut(s) 112, 298
BstSFI CTRYAG 1 cut(s) 403
BstUI CGCG 1 cut(s) 69
BstV2I GAAGAC 1 cut(s) 349
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BsuRI GGCC 1 cut(s) 255
BtgI CCRYGG 1 cut(s) 481
BtsCI GGATG 2 cut(s) 163, 194
BveI ACCTGC 1 cut(s) 456
Cfr13I GGNCC 1 cut(s) 468
CseI GACGC 1 cut(s) 158
Csp6I GTAC 1 cut(s) 13
CviQI GTAC 1 cut(s) 13
DpnI GATC 2 cut(s) 51, 528
DpnII GATC 2 cut(s) 49, 526
DraIII CACNNNGTG 1 cut(s) 449
EaeI YGGCCR 1 cut(s) 253
Eco24I GRGCYC 1 cut(s) 32
Eco31I GGTCTC 2 cut(s) 100, 426
Eco47I GGWCC 1 cut(s) 468
Eco57I CTGAAG 1 cut(s) 542
Eco72I CACGTG 1 cut(s) 449
Eco88I CYCGRG 1 cut(s) 33
EcoO109I RGGNCCY 1 cut(s) 468
EcoRII CCWGG 2 cut(s) 112, 298
EcoT38I GRGCYC 1 cut(s) 32
Esp3I CGTCTC 1 cut(s) 141
FaiI YATR 7 cut(s) 83, 94, 120, 285, 390, 478, 504
FaqI GGGAC 2 cut(s) 345, 454
FauI CCCGC 1 cut(s) 321
Fnu4HI GCNGC 1 cut(s) 355
FokI GGATG 2 cut(s) 170, 201
FriOI GRGCYC 1 cut(s) 32
Fsp4HI GCNGC 1 cut(s) 355
FspBI CTAG 3 cut(s) 216, 384, 426
GluI GCNGC 1 cut(s) 355
HaeIII GGCC 1 cut(s) 255
HgaI GACGC 1 cut(s) 158
Hin1I GRCGYC 2 cut(s) 346, 430
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 3 cut(s) 13, 130, 485
Hpy188I TCNGA 6 cut(s) 20, 43, 77, 105, 271, 522
Hpy188III TCNNGA 4 cut(s) 53, 216, 314, 339
Hpy8I GTNNAC 3 cut(s) 13, 130, 485
Hpy99I CGWCG 4 cut(s) 20, 351, 435, 534
HpyAV CCTTC 1 cut(s) 517
HpyCH4III ACNGT 4 cut(s) 143, 374, 407, 482
HpyCH4IV ACGT 4 cut(s) 15, 346, 430, 448
HpyCH4V TGCA 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpySE526I ACGT 4 cut(s) 15, 346, 430, 448
Hsp92I GRCGYC 2 cut(s) 346, 430
Kzo9I GATC 2 cut(s) 49, 526
LmnI GCTCC 1 cut(s) 399
LpnPI CCDG 9 cut(s) 99, 126, 246, 285, 312, 324, 382, 451, 526
LweI GCATC 1 cut(s) 148
MaeI CTAG 3 cut(s) 216, 384, 426
MaeII ACGT 4 cut(s) 15, 346, 430, 448
MalI GATC 2 cut(s) 51, 528
MboI GATC 2 cut(s) 49, 526
MboII GAAGA 2 cut(s) 68, 354
MflI RGATCY 1 cut(s) 49
MhlI GDGCHC 1 cut(s) 32
MluCI AATT 1 cut(s) 22
MnlI CCTC 8 cut(s) 37, 42, 148, 212, 236, 375, 420, 484
MspR9I CCNGG 2 cut(s) 114, 300
MvaI CCWGG 2 cut(s) 114, 300
MvnI CGCG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 158
NdeII GATC 2 cut(s) 49, 526
NlaIV GGNNCC 1 cut(s) 470
PaeR7I CTCGAG 1 cut(s) 33
PcsI WCGNNNNNNNCGW 1 cut(s) 319
PflMI CCANNNNNTGG 1 cut(s) 482
PkrI GCNGC 1 cut(s) 356
PmaCI CACGTG 1 cut(s) 449
PmlI CACGTG 1 cut(s) 449
Ppu21I YACGTR 1 cut(s) 449
PpuMI RGGWCCY 1 cut(s) 468
PsiI TTATAA 1 cut(s) 83
Psp5II RGGWCCY 1 cut(s) 468
Psp6I CCWGG 2 cut(s) 112, 298
PspCI CACGTG 1 cut(s) 449
PspGI CCWGG 2 cut(s) 112, 298
PspN4I GGNNCC 1 cut(s) 470
PspPI GGNCC 1 cut(s) 468
PspPPI RGGWCCY 1 cut(s) 468
PspXI VCTCGAGB 1 cut(s) 33
PsuI RGATCY 1 cut(s) 49
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SatI GCNGC 1 cut(s) 355
Sau3AI GATC 2 cut(s) 49, 526
Sau96I GGNCC 1 cut(s) 468
ScrFI CCNGG 2 cut(s) 114, 300
SduI GDGCHC 1 cut(s) 32
SetI ASST 8 cut(s) 18, 204, 223, 349, 404, 433, 451, 470
SfaNI GCATC 1 cut(s) 148
SfcI CTRYAG 1 cut(s) 403
Sfr274I CTCGAG 1 cut(s) 33
SinI GGWCC 1 cut(s) 468
SlaI CTCGAG 1 cut(s) 33
SmlI CTYRAG 1 cut(s) 33
SmoI CTYRAG 1 cut(s) 33
Sse9I AATT 1 cut(s) 22
SsiI CCGC 3 cut(s) 328, 355, 418
SspMI CTAG 3 cut(s) 216, 384, 426
StyD4I CCNGG 2 cut(s) 112, 298
TaaI ACNGT 4 cut(s) 143, 374, 407, 482
TaiI ACGT 4 cut(s) 18, 349, 433, 451
TaqI TCGA 3 cut(s) 34, 54, 367
TasI AATT 1 cut(s) 22
TauI GCSGC 1 cut(s) 357
TspGWI ACGGA 1 cut(s) 155
Van91I CCANNNNNTGG 1 cut(s) 482
VpaK11BI GGWCC 1 cut(s) 468
XapI RAATTY 1 cut(s) 22
XbaI TCTAGA 1 cut(s) 215
XhoI CTCGAG 1 cut(s) 33
XspI CTAG 3 cut(s) 216, 384, 426
ZraI GACGTC 2 cut(s) 347, 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.