Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010800

Physical Location & Seq

Genomic Coordinates Reverse (-)

26777042 .. 26779563

Gene Structure 2522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g36630.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGTCTCGCGTGTACGTTGGGAACTTGAGTTCTCGGGTTTCGGAGGGAGAGCTGGAAGATGAGTTCCGCAATTTCGGAGTTATAAGAAGTGTGTGGGTTGCGAGGAGGCCACCGGGTTATGCTTTCGTCGATTTTGATGACAGTAGAGATGCTGAGGATGCCATTCGTGAATTAGATGGGAAGAATGGCTGGAGAGTTGAGCTTTCACACAACTCTAGAGGTGGTGGTGGTGGTGGTCGTGGCGGAGGAGGTCGTGGCCGTTCTGGAGGTTCTGATTTGAAGTGTTATGAGTGTGGTGAGCCTGGTCATTTTGCTCGTGAATGCCGTCTGCGTGGTGGTTCTGGAAGGCGTCGTAGCCGCAGCCCCCCAAGGTATCGCAGAAGTCCTAGTTATGGCAGGAGAAGCTACAGTCCACGTGGGCGCTCTCCCCCACCCAGACGTCGCAGTTTGACACCACCCAGGGGTGGCCACAGCCGTAGCAGGTCTCCACCATACCGTGGAAGGGAGGAGTTGCCATATGCAAATGGTAATGGCTTGAAGGATCGACGCAGAAGCAGGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

188

Amino Acids

20.91

Weight (kDa)

11.3

Isoelectric Point (pI)

105.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	4 - 61	4e-17	RNA recognition motif
zf-CCHC	PF00098	94 - 109	1e-07	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24590
fragaria_vesca	FvH4_2g36630 FvH4_2g36630
malus_domestica	MD08G1126400.v1.1 MD15G1106100.v1.1
prunus_persica	Prupe.1G458000_v2.0.a1 Prupe.1G458000_v2.0.a1 Prupe.1G458000_v2.0.a1 Prupe.1G458000_v2.0.a1
pyrus_communis	pycom08g10560
rosa_chinensis	RchiOBHm_Chr6g0305171
rosa_laevigata	RLG00000010911
rosa_roxburghii	Rroxscaffold_7G00163080
rosa_rugosa	Rorug06G0338300
rosa_samantha	Rh2AG066100 Rh6AG449900 Rh6BG451500 Rh6CG463600 Rh6DG450500
rosa_wichuraiana	Rw6G039190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	83
AatII	GACGTC	1 cut(s)	442
Acc36I	ACCTGC	1 cut(s)	471
AccB7I	CCANNNNNTGG	1 cut(s)	497
AccII	CGCG	1 cut(s)	9
AciI	CCGC	3 cut(s)	67, 243, 358
AclWI	GGATC	1 cut(s)	549
AcoI	YGGCCR	2 cut(s)	256, 466
AcvI	CACGTG	1 cut(s)	416
AcyI	GRCGYC	2 cut(s)	349, 439
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	5 cut(s)	392, 461, 464, 497, 502
AgsI	TTSAA	2 cut(s)	280, 538
AjnI	CCWGG	2 cut(s)	301, 458
AloI	GAACNNNNNNTCC	4 cut(s)	13, 45, 47, 79
AluBI	AGCT	3 cut(s)	52, 202, 405
AluI	AGCT	3 cut(s)	52, 202, 405
Alw26I	GTCTC	2 cut(s)	9, 489
AlwI	GGATC	1 cut(s)	549
Ama87I	CYCGRG	1 cut(s)	33
AoxI	GGCC	3 cut(s)	107, 256, 466
ApeKI	GCWGC	1 cut(s)	360
AspLEI	GCGC	1 cut(s)	423
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	308
AvaI	CYCGRG	1 cut(s)	33
BalI	TGGCCA	1 cut(s)	468
BauI	CACGAG	1 cut(s)	315
BbrPI	CACGTG	1 cut(s)	416
BbvCI	CCTCAGC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	372
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	3 cut(s)	243, 309, 459
BciT130I	CCWGG	2 cut(s)	303, 460
BcnI	CCSGG	1 cut(s)	114
BcoDI	GTCTC	2 cut(s)	9, 489
BfaI	CTAG	2 cut(s)	216, 387
BfmI	CTRYAG	1 cut(s)	406
BfoI	RGCGCY	1 cut(s)	424
BfuAI	ACCTGC	1 cut(s)	471
BisI	GCNGC	2 cut(s)	358, 361
BlsI	GCNGC	2 cut(s)	359, 362
Bme1390I	CCNGG	3 cut(s)	114, 303, 460
BmeT110I	CYCGRG	1 cut(s)	33
BmrFI	CCNGG	3 cut(s)	114, 303, 460
BmsI	GCATC	2 cut(s)	139, 148
BpmI	CTGGAG	2 cut(s)	211, 285
Bpu10I	CCTNAGC	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	46
BpuMI	CCSGG	1 cut(s)	114
BsaAI	YACGTR	1 cut(s)	416
BsaHI	GRCGYC	2 cut(s)	349, 439
BsaI	GGTCTC	1 cut(s)	489
BsaJI	CCNNGG	4 cut(s)	368, 458, 459, 496
Bsc4I	CCNNNNNNNGG	5 cut(s)	392, 461, 464, 497, 502
BseBI	CCWGG	2 cut(s)	303, 460
BseDI	CCNNGG	4 cut(s)	368, 458, 459, 496
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	5 cut(s)	392, 461, 464, 497, 502
BseMII	CTCAG	1 cut(s)	144
BseRI	GAGGAG	3 cut(s)	118, 261, 521
BseXI	GCAGC	1 cut(s)	372
Bsh1236I	CGCG	1 cut(s)	9
BshFI	GGCC	3 cut(s)	109, 258, 468
BsiHKCI	CYCGRG	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	113
BslI	CCNNNNNNNGG	5 cut(s)	392, 461, 464, 497, 502
BsmAI	GTCTC	2 cut(s)	9, 489
BsmI	GAATGC	1 cut(s)	326
BsnI	GGCC	3 cut(s)	109, 258, 468
Bso31I	GGTCTC	1 cut(s)	489
BsoBI	CYCGRG	1 cut(s)	33
Bsp143I	GATC	1 cut(s)	541
BspACI	CCGC	3 cut(s)	67, 243, 358
BspANI	GGCC	3 cut(s)	109, 258, 468
BspCNI	CTCAG	1 cut(s)	145
BspFNI	CGCG	1 cut(s)	9
BspMI	ACCTGC	1 cut(s)	471
BspPI	GGATC	1 cut(s)	549
BspTNI	GGTCTC	1 cut(s)	489
BssECI	CCNNGG	4 cut(s)	368, 458, 459, 496
BssMI	GATC	1 cut(s)	541
BssNI	GRCGYC	2 cut(s)	349, 439
BssSI	CACGAG	1 cut(s)	315
BssT1I	CCWWGG	1 cut(s)	368
Bst2BI	CACGAG	1 cut(s)	315
Bst2UI	CCWGG	2 cut(s)	303, 460
Bst4CI	ACNGT	3 cut(s)	143, 410, 497
BstACI	GRCGYC	2 cut(s)	349, 439
BstBAI	YACGTR	1 cut(s)	416
BstDEI	CTNAG	1 cut(s)	153
BstDSI	CCRYGG	1 cut(s)	496
BstF5I	GGATG	1 cut(s)	163
BstFNI	CGCG	1 cut(s)	9
BstH2I	RGCGCY	1 cut(s)	424
BstHHI	GCGC	1 cut(s)	423
BstKTI	GATC	1 cut(s)	544
BstMAI	GTCTC	2 cut(s)	9, 489
BstMBI	GATC	1 cut(s)	541
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 402
BstNI	CCWGG	2 cut(s)	303, 460
BstSCI	CCNGG	3 cut(s)	112, 301, 458
BstSFI	CTRYAG	1 cut(s)	406
BstUI	CGCG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	372
BsuRI	GGCC	3 cut(s)	109, 258, 468
BtgI	CCRYGG	1 cut(s)	496
BtsCI	GGATG	1 cut(s)	163
BveI	ACCTGC	1 cut(s)	471
CfoI	GCGC	1 cut(s)	423
CseI	GACGC	2 cut(s)	338, 555
Csp6I	GTAC	1 cut(s)	13
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	1 cut(s)	543
DpnII	GATC	1 cut(s)	541
EaeI	YGGCCR	2 cut(s)	256, 466
EciI	GGCGGA	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	368
Eco31I	GGTCTC	1 cut(s)	489
Eco72I	CACGTG	1 cut(s)	416
Eco88I	CYCGRG	1 cut(s)	33
EcoRII	CCWGG	2 cut(s)	301, 458
EcoT14I	CCWWGG	1 cut(s)	368
ErhI	CCWWGG	1 cut(s)	368
FaiI	YATR	7 cut(s)	83, 120, 288, 393, 493, 517, 519
FauNDI	CATATG	1 cut(s)	517
Fnu4HI	GCNGC	2 cut(s)	358, 361
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	2 cut(s)	358, 361
FspBI	CTAG	2 cut(s)	216, 387
GlaI	GCGC	1 cut(s)	422
GluI	GCNGC	2 cut(s)	358, 361
GsuI	CTGGAG	2 cut(s)	211, 285
HaeII	RGCGCY	1 cut(s)	424
HaeIII	GGCC	3 cut(s)	109, 258, 468
HapII	CCGG	1 cut(s)	113
HgaI	GACGC	2 cut(s)	338, 555
HhaI	GCGC	1 cut(s)	423
Hin1I	GRCGYC	2 cut(s)	349, 439
Hin6I	GCGC	1 cut(s)	421
HinP1I	GCGC	1 cut(s)	421
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	2 cut(s)	13, 413
Hpy188I	TCNGA	3 cut(s)	43, 77, 274
Hpy188III	TCNNGA	5 cut(s)	167, 216, 264, 317, 342
Hpy8I	GTNNAC	2 cut(s)	13, 413
Hpy99I	CGWCG	4 cut(s)	131, 354, 444, 549
HpyAV	CCTTC	3 cut(s)	339, 495, 532
HpyCH4III	ACNGT	3 cut(s)	143, 410, 497
HpyCH4IV	ACGT	3 cut(s)	15, 415, 439
HpyCH4V	TGCA	1 cut(s)	521
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 402
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	3 cut(s)	15, 415, 439
Hsp92I	GRCGYC	2 cut(s)	349, 439
HspAI	GCGC	1 cut(s)	421
Kzo9I	GATC	1 cut(s)	541
Lsp1109I	GCAGC	1 cut(s)	372
LweI	GCATC	2 cut(s)	139, 148
MaeI	CTAG	2 cut(s)	216, 387
MaeII	ACGT	3 cut(s)	15, 415, 439
MalI	GATC	1 cut(s)	543
MboI	GATC	1 cut(s)	541
MboII	GAAGA	2 cut(s)	68, 193
MlsI	TGGCCA	1 cut(s)	468
MluCI	AATT	2 cut(s)	70, 170
MluNI	TGGCCA	1 cut(s)	468
MnlI	CCTC	9 cut(s)	37, 96, 99, 148, 212, 239, 242, 260, 499
Mox20I	TGGCCA	1 cut(s)	468
MscI	TGGCCA	1 cut(s)	468
Msp20I	TGGCCA	1 cut(s)	468
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	3 cut(s)	114, 303, 460
Mva1269I	GAATGC	1 cut(s)	326
MvaI	CCWGG	2 cut(s)	303, 460
MvnI	CGCG	1 cut(s)	9
MwoI	GCNNNNNNNGC	2 cut(s)	158, 402
NciI	CCSGG	1 cut(s)	114
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	1 cut(s)	541
PasI	CCCWGGG	1 cut(s)	459
PcsI	WCGNNNNNNNCGW	1 cut(s)	322
PctI	GAATGC	1 cut(s)	326
PflMI	CCANNNNNTGG	1 cut(s)	497
PkrI	GCNGC	2 cut(s)	359, 362
PmaCI	CACGTG	1 cut(s)	416
PmlI	CACGTG	1 cut(s)	416
Ppu21I	YACGTR	1 cut(s)	416
PsiI	TTATAA	1 cut(s)	83
Psp6I	CCWGG	2 cut(s)	301, 458
PspCI	CACGTG	1 cut(s)	416
PspGI	CCWGG	2 cut(s)	301, 458
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SatI	GCNGC	2 cut(s)	358, 361
Sau3AI	GATC	1 cut(s)	541
ScrFI	CCNGG	3 cut(s)	114, 303, 460
SfaNI	GCATC	2 cut(s)	139, 148
SfcI	CTRYAG	1 cut(s)	406
SmlI	CTYRAG	1 cut(s)	25
SmoI	CTYRAG	1 cut(s)	25
Sse9I	AATT	2 cut(s)	70, 170
SsiI	CCGC	3 cut(s)	67, 243, 358
SspMI	CTAG	2 cut(s)	216, 387
StyD4I	CCNGG	3 cut(s)	112, 301, 458
StyI	CCWWGG	1 cut(s)	368
TaaI	ACNGT	3 cut(s)	143, 410, 497
TaiI	ACGT	3 cut(s)	18, 418, 442
TaqI	TCGA	2 cut(s)	129, 544
TasI	AATT	2 cut(s)	70, 170
TauI	GCSGC	1 cut(s)	360
TseI	GCWGC	1 cut(s)	360
Van91I	CCANNNNNTGG	1 cut(s)	497
XbaI	TCTAGA	1 cut(s)	215
XspI	CTAG	2 cut(s)	216, 387
ZraI	GACGTC	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.