Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009352

Physical Location & Seq

Genomic Coordinates Reverse (-)

10901183 .. 10902919

Gene Structure 1737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G25610.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTCCGGTGTGGCTATTCATGCGAGTTCATGGGGCGCGGCTCTGGTGAGAATCTCCCCGTACACTTTCTCCGCCATCGGAATCGCCATCTCCATCGGCGTCTCTGTTCTTGGTGCTGCCTGGGGAATTTACATTACCGGAAGTAGTTTGATCGGTGCCGCCATTGAAGCTCCTCGAATCACTTCCAAGAATCTCATCAGTGTAATCTTCTGTGAAGCCGTGGCTATATACGGTGTTATTGTGGCAATCATATTACAAACGAAGTTGGAGAGTGTACCATCATCAAAGATGTATGATGCTGAGTCTCTAAGAGCTGGATATGCAATCTTTGCTTCTGGAATCATTGTTGGATTCGCAAACCTTGTATGCGGGTTATGTGTAGGAATCATTGGAAGCAGTTGCGCATTGTCTGATGCTCAGAACTCGACGCTCTTTGTTAAGATTCTTGTGATTGAGATCTTTGGGAGTGCTCTCGGGTTATTTGGAGTTATCGTTGGGATTATTATGTCAGCTCAAGCTACATGGCCTACAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031224 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

178

Amino Acids

18.22

Weight (kDa)

7.64

Isoelectric Point (pI)

34.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	75 - 134	1.8e-16	ATP synthase subunit C
ATP-synt_C	PF00137	159 - 218	3.6e-12	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25610 AT2G25610 AT4G32530 AT4G32530
fragaria_vesca	FvH4_2g29800
malus_domestica	MD08G1141700.v1.1 MD15G1118200.v1.1
prunus_persica	Prupe.1G471600_v2.0.a1 Prupe.1G471600_v2.0.a1 Prupe.1G471600_v2.0.a1
pyrus_communis	pycom08g11960
rosa_chinensis	RchiOBHm_Chr6g0298821
rosa_laevigata	RLG00000011482
rosa_multiflora	Rmu_ssc0000397.1_g000018
rosa_roxburghii	Rroxscaffold_7G00169300
rosa_rugosa	Rorug06G0283100
rosa_samantha	Rh6AG394800 Rh6BG402700 Rh6CG408400 Rh6DG395200
rosa_wichuraiana	Rw5G000010 Rw6G034540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	403
AccB1I	GGYRCC	1 cut(s)	155
AccII	CGCG	1 cut(s)	38
AciI	CCGC	4 cut(s)	38, 72, 159, 369
AcsI	RAATTY	1 cut(s)	126
AcyI	GRCGYC	1 cut(s)	99
AfaI	GTAC	2 cut(s)	62, 276
AgsI	TTSAA	1 cut(s)	167
AjnI	CCWGG	1 cut(s)	119
AluBI	AGCT	4 cut(s)	170, 314, 512, 518
AluI	AGCT	4 cut(s)	170, 314, 512, 518
Alw21I	GWGCWC	1 cut(s)	472
Alw26I	GTCTC	2 cut(s)	106, 309
Ama87I	CYCGRG	1 cut(s)	473
AoxI	GGCC	1 cut(s)	524
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	1 cut(s)	126
Asp700I	GAANNNNTTC	1 cut(s)	181
AspLEI	GCGC	2 cut(s)	38, 404
AsuHPI	GGTGA	1 cut(s)	58
AvaI	CYCGRG	1 cut(s)	473
BanI	GGYRCC	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	472
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	4 cut(s)	83, 95, 101, 286
BceAI	ACGGC	1 cut(s)	203
BciT130I	CCWGG	1 cut(s)	121
BcoDI	GTCTC	2 cut(s)	106, 309
BglII	AGATCT	1 cut(s)	456
BisI	GCNGC	3 cut(s)	39, 117, 159
BlsI	GCNGC	3 cut(s)	40, 118, 160
Bme1390I	CCNGG	1 cut(s)	121
BmeT110I	CYCGRG	1 cut(s)	473
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	1 cut(s)	121
BmsI	GCATC	2 cut(s)	286, 403
BpuEI	CTTGAG	1 cut(s)	498
BsaBI	GATNNNNATC	1 cut(s)	455
BsaHI	GRCGYC	1 cut(s)	99
BsaJI	CCNNGG	2 cut(s)	120, 219
BsaWI	WCCGGW	2 cut(s)	5, 137
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 83, 477, 507
Bse8I	GATNNNNATC	1 cut(s)	455
BseBI	CCWGG	1 cut(s)	121
BseDI	CCNNGG	2 cut(s)	120, 219
BseJI	GATNNNNATC	1 cut(s)	455
BseMII	CTCAG	2 cut(s)	291, 431
BseRI	GAGGAG	1 cut(s)	162
BseXI	GCAGC	1 cut(s)	103
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	1 cut(s)	526
BshNI	GGYRCC	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	472
BsiHKCI	CYCGRG	1 cut(s)	473
BsiSI	CCGG	2 cut(s)	6, 138
BsmAI	GTCTC	2 cut(s)	106, 309
BsmBI	CGTCTC	1 cut(s)	106
BsnI	GGCC	1 cut(s)	526
BsoBI	CYCGRG	1 cut(s)	473
Bsp1286I	GDGCHC	1 cut(s)	472
Bsp143I	GATC	2 cut(s)	150, 456
BspACI	CCGC	4 cut(s)	38, 72, 159, 369
BspANI	GGCC	1 cut(s)	526
BspCNI	CTCAG	2 cut(s)	292, 430
BspFNI	CGCG	1 cut(s)	38
BspLI	GGNNCC	1 cut(s)	157
BspT107I	GGYRCC	1 cut(s)	155
BssECI	CCNNGG	2 cut(s)	120, 219
BssMI	GATC	2 cut(s)	150, 456
BssNI	GRCGYC	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	121
Bst4CI	ACNGT	1 cut(s)	233
BstACI	GRCGYC	1 cut(s)	99
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstDEI	CTNAG	3 cut(s)	300, 308, 417
BstDSI	CCRYGG	1 cut(s)	219
BstFNI	CGCG	1 cut(s)	38
BstHHI	GCGC	2 cut(s)	38, 404
BstKTI	GATC	2 cut(s)	153, 459
BstMAI	GTCTC	2 cut(s)	106, 309
BstMBI	GATC	2 cut(s)	150, 456
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 167, 320, 329
BstNI	CCWGG	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	119
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	456
BstYI	RGATCY	1 cut(s)	456
BsuRI	GGCC	1 cut(s)	526
BtgI	CCRYGG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	205
CfoI	GCGC	2 cut(s)	38, 404
CseI	GACGC	2 cut(s)	88, 436
Csp6I	GTAC	2 cut(s)	61, 275
CviAII	CATG	3 cut(s)	20, 30, 522
CviJI	RGCY	9 cut(s)	14, 41, 170, 218, 224, 314, 512, 518, 526
CviKI_1	RGCY	9 cut(s)	14, 41, 170, 218, 224, 314, 512, 518, 526
CviQI	GTAC	2 cut(s)	61, 275
DdeI	CTNAG	3 cut(s)	300, 308, 417
DpnI	GATC	2 cut(s)	152, 458
DpnII	GATC	2 cut(s)	150, 456
EciI	GGCGGA	1 cut(s)	61
Eco88I	CYCGRG	1 cut(s)	473
EcoRII	CCWGG	1 cut(s)	119
Esp3I	CGTCTC	1 cut(s)	106
FaeI	CATG	3 cut(s)	23, 33, 525
FatI	CATG	3 cut(s)	19, 29, 521
FauI	CCCGC	1 cut(s)	362
Fnu4HI	GCNGC	3 cut(s)	39, 117, 159
Fsp4HI	GCNGC	3 cut(s)	39, 117, 159
FspI	TGCGCA	1 cut(s)	403
GlaI	GCGC	2 cut(s)	37, 403
GluI	GCNGC	3 cut(s)	39, 117, 159
HaeIII	GGCC	1 cut(s)	526
HapII	CCGG	2 cut(s)	6, 138
HgaI	GACGC	2 cut(s)	88, 436
HhaI	GCGC	2 cut(s)	38, 404
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	3 cut(s)	23, 33, 525
Hin6I	GCGC	2 cut(s)	36, 402
HinP1I	GCGC	2 cut(s)	36, 402
HinfI	GANTC	9 cut(s)	51, 81, 177, 190, 302, 339, 351, 384, 442
HpaII	CCGG	2 cut(s)	6, 138
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	2 cut(s)	63, 275
Hpy188I	TCNGA	3 cut(s)	80, 412, 420
Hpy188III	TCNNGA	1 cut(s)	336
Hpy8I	GTNNAC	2 cut(s)	63, 275
Hpy99I	CGWCG	1 cut(s)	430
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4V	TGCA	1 cut(s)	323
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 167, 320, 329
HpyF3I	CTNAG	3 cut(s)	300, 308, 417
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	3 cut(s)	23, 33, 525
HspAI	GCGC	2 cut(s)	36, 402
Kzo9I	GATC	2 cut(s)	150, 456
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	7 cut(s)	19, 29, 106, 133, 151, 300, 321
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	2 cut(s)	286, 403
MalI	GATC	2 cut(s)	152, 458
MboI	GATC	2 cut(s)	150, 456
MboII	GAAGA	1 cut(s)	199
MflI	RGATCY	1 cut(s)	456
MhlI	GDGCHC	1 cut(s)	472
MluCI	AATT	1 cut(s)	126
MlyI	GAGTC	1 cut(s)	311
MmeI	TCCRAC	2 cut(s)	246, 328
MnlI	CCTC	1 cut(s)	183
MroXI	GAANNNNTTC	1 cut(s)	181
MseI	TTAA	1 cut(s)	438
MspI	CCGG	2 cut(s)	6, 138
MspR9I	CCNGG	1 cut(s)	121
MvaI	CCWGG	1 cut(s)	121
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	4 cut(s)	20, 167, 320, 329
NdeII	GATC	2 cut(s)	150, 456
NlaIII	CATG	3 cut(s)	23, 33, 525
NlaIV	GGNNCC	1 cut(s)	157
NsbI	TGCGCA	1 cut(s)	403
PdmI	GAANNNNTTC	1 cut(s)	181
PfeI	GAWTC	8 cut(s)	51, 81, 177, 190, 339, 351, 384, 442
PkrI	GCNGC	3 cut(s)	40, 118, 160
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
Psp6I	CCWGG	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	456
RsaI	GTAC	2 cut(s)	62, 276
RsaNI	GTAC	2 cut(s)	61, 275
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	3 cut(s)	39, 117, 159
Sau3AI	GATC	2 cut(s)	150, 456
SchI	GAGTC	1 cut(s)	311
ScrFI	CCNGG	1 cut(s)	121
SduI	GDGCHC	1 cut(s)	472
SetI	ASST	5 cut(s)	172, 316, 363, 514, 520
SfaNI	GCATC	2 cut(s)	286, 403
SmlI	CTYRAG	1 cut(s)	513
SmoI	CTYRAG	1 cut(s)	513
Sse9I	AATT	1 cut(s)	126
SsiI	CCGC	4 cut(s)	38, 72, 159, 369
StyD4I	CCNGG	1 cut(s)	119
TaaI	ACNGT	1 cut(s)	233
TaqI	TCGA	2 cut(s)	175, 425
TasI	AATT	1 cut(s)	126
TauI	GCSGC	2 cut(s)	41, 161
TfiI	GAWTC	8 cut(s)	51, 81, 177, 190, 339, 351, 384, 442
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	1 cut(s)	205
TseI	GCWGC	1 cut(s)	116
TspDTI	ATGAA	2 cut(s)	8, 18
TspRI	CASTG	1 cut(s)	205
XapI	RAATTY	1 cut(s)	126
XmnI	GAANNNNTTC	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.