Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000397.1

Orthogroup ID

OG0009352

Physical Location & Seq

Genomic Coordinates Reverse (-)

73476 .. 73963

Gene Structure 488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000397.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atgttgcatctggaaactaacttggaagcgctcgagagtgttcctgcttcaaggatatatgaacctgaatctcttagagctggatatgcaatctttgcgtctgggatcattgtgggatttgcgaaccttttctgcgggttatgcgtgggaattattggaagcagctgtgcattgtccgatgcccaaaactccacactttttgtgaagattcttgtgattgagatctttggcagcgcccttggattgtttggagtaattgttggaatcataatgtcagctcaagcaacatggcctacaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0008553 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0015988 GO:0015991 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0097708 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

100

Amino Acids

10.51

Weight (kDa)

4.8

Isoelectric Point (pI)

32.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25610 AT2G25610 AT4G32530 AT4G32530
fragaria_vesca	FvH4_2g29800
malus_domestica	MD08G1141700.v1.1 MD15G1118200.v1.1
prunus_persica	Prupe.1G471600_v2.0.a1 Prupe.1G471600_v2.0.a1 Prupe.1G471600_v2.0.a1
pyrus_communis	pycom08g11960
rosa_chinensis	RchiOBHm_Chr6g0298821
rosa_laevigata	RLG00000011482
rosa_multiflora	Rmu_ssc0000397.1_g000018
rosa_roxburghii	Rroxscaffold_7G00169300
rosa_rugosa	Rorug06G0283100
rosa_samantha	Rh6AG394800 Rh6BG402700 Rh6CG408400 Rh6DG395200
rosa_wichuraiana	Rw5G000010 Rw6G034540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	135
AclWI	GGATC	1 cut(s)	113
AfeI	AGCGCT	1 cut(s)	30
AgsI	TTSAA	1 cut(s)	51
AluBI	AGCT	3 cut(s)	80, 165, 278
AluI	AGCT	3 cut(s)	80, 165, 278
AlwI	GGATC	1 cut(s)	113
Ama87I	CYCGRG	1 cut(s)	32
Aor51HI	AGCGCT	1 cut(s)	30
AoxI	GGCC	1 cut(s)	290
ApeKI	GCWGC	2 cut(s)	162, 231
Asp700I	GAANNNNTTC	1 cut(s)	128
AspLEI	GCGC	2 cut(s)	31, 236
AvaI	CYCGRG	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	174, 243
BfoI	RGCGCY	2 cut(s)	32, 237
BglII	AGATCT	1 cut(s)	222
BisI	GCNGC	2 cut(s)	163, 232
BlsI	GCNGC	2 cut(s)	164, 233
BmeT110I	CYCGRG	1 cut(s)	32
BmsI	GCATC	2 cut(s)	16, 169
BpuEI	CTTGAG	1 cut(s)	264
BsaBI	GATNNNNATC	1 cut(s)	221
BsaJI	CCNNGG	1 cut(s)	238
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bse8I	GATNNNNATC	1 cut(s)	221
BseDI	CCNNGG	1 cut(s)	238
BseJI	GATNNNNATC	1 cut(s)	221
BseXI	GCAGC	2 cut(s)	174, 243
BshFI	GGCC	1 cut(s)	292
BsiHKCI	CYCGRG	1 cut(s)	32
BsnI	GGCC	1 cut(s)	292
BsoBI	CYCGRG	1 cut(s)	32
Bsp143I	GATC	2 cut(s)	105, 222
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	1 cut(s)	292
BspPI	GGATC	1 cut(s)	113
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	2 cut(s)	105, 222
BssT1I	CCWWGG	1 cut(s)	238
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	74
BstH2I	RGCGCY	2 cut(s)	32, 237
BstHHI	GCGC	2 cut(s)	31, 236
BstKTI	GATC	2 cut(s)	108, 225
BstMBI	GATC	2 cut(s)	105, 222
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 95, 141
BstV1I	GCAGC	2 cut(s)	174, 243
BstX2I	RGATCY	1 cut(s)	222
BstYI	RGATCY	1 cut(s)	222
BsuRI	GGCC	1 cut(s)	292
CfoI	GCGC	2 cut(s)	31, 236
CseI	GACGC	1 cut(s)	87
CspCI	CAANNNNNGTGG	2 cut(s)	181, 216
CviAII	CATG	1 cut(s)	288
CviJI	RGCY	4 cut(s)	80, 165, 278, 292
CviKI_1	RGCY	4 cut(s)	80, 165, 278, 292
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	2 cut(s)	107, 224
DpnII	GATC	2 cut(s)	105, 222
Eco130I	CCWWGG	1 cut(s)	238
Eco47III	AGCGCT	1 cut(s)	30
Eco88I	CYCGRG	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	238
FaeI	CATG	1 cut(s)	291
FaiI	YATR	6 cut(s)	58, 60, 87, 142, 269, 289
FatI	CATG	1 cut(s)	287
FauI	CCCGC	1 cut(s)	128
Fnu4HI	GCNGC	2 cut(s)	163, 232
Fsp4HI	GCNGC	2 cut(s)	163, 232
GlaI	GCGC	2 cut(s)	30, 235
GluI	GCNGC	2 cut(s)	163, 232
HaeII	RGCGCY	2 cut(s)	32, 237
HaeIII	GGCC	1 cut(s)	292
HgaI	GACGC	1 cut(s)	87
HhaI	GCGC	2 cut(s)	31, 236
Hin1II	CATG	1 cut(s)	291
Hin6I	GCGC	2 cut(s)	29, 234
HinP1I	GCGC	2 cut(s)	29, 234
HinfI	GANTC	3 cut(s)	68, 208, 264
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	2 cut(s)	11, 34
HpyCH4V	TGCA	3 cut(s)	7, 89, 170
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 95, 141
HpyF3I	CTNAG	1 cut(s)	74
Hsp92II	CATG	1 cut(s)	291
HspAI	GCGC	2 cut(s)	29, 234
Kzo9I	GATC	2 cut(s)	105, 222
LpnPI	CCDG	4 cut(s)	57, 66, 78, 87
Lsp1109I	GCAGC	2 cut(s)	174, 243
LweI	GCATC	2 cut(s)	16, 169
MalI	GATC	2 cut(s)	107, 224
MboI	GATC	2 cut(s)	105, 222
MboII	GAAGA	1 cut(s)	217
MflI	RGATCY	1 cut(s)	222
MluCI	AATT	2 cut(s)	150, 255
MmeI	TCCRAC	1 cut(s)	241
MroXI	GAANNNNTTC	1 cut(s)	128
MspA1I	CMGCKG	1 cut(s)	165
MwoI	GCNNNNNNNGC	3 cut(s)	86, 95, 141
NdeII	GATC	2 cut(s)	105, 222
NlaIII	CATG	1 cut(s)	291
PaeR7I	CTCGAG	1 cut(s)	32
PdmI	GAANNNNTTC	1 cut(s)	128
PfeI	GAWTC	3 cut(s)	68, 208, 264
PkrI	GCNGC	2 cut(s)	164, 233
PsuI	RGATCY	1 cut(s)	222
PvuII	CAGCTG	1 cut(s)	165
SatI	GCNGC	2 cut(s)	163, 232
Sau3AI	GATC	2 cut(s)	105, 222
SetI	ASST	5 cut(s)	67, 82, 129, 167, 280
SfaNI	GCATC	2 cut(s)	16, 169
Sfr274I	CTCGAG	1 cut(s)	32
SlaI	CTCGAG	1 cut(s)	32
SmlI	CTYRAG	2 cut(s)	32, 279
SmoI	CTYRAG	2 cut(s)	32, 279
Sse9I	AATT	2 cut(s)	150, 255
SsiI	CCGC	1 cut(s)	135
StyI	CCWWGG	1 cut(s)	238
TaqI	TCGA	1 cut(s)	33
TasI	AATT	2 cut(s)	150, 255
TfiI	GAWTC	3 cut(s)	68, 208, 264
TseI	GCWGC	2 cut(s)	162, 231
TspDTI	ATGAA	1 cut(s)	75
XhoI	CTCGAG	1 cut(s)	32
XmnI	GAANNNNTTC	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.