Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0009352

Physical Location & Seq

Genomic Coordinates Forward (+)

13961196 .. 13963150

Gene Structure 1955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1141700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTCAGGTGCAGCAGTAGCGGTGGGTTACTCGAGCTCCTGGGCACGCGCCCTCGTCCAGATCTCTCCCTACACTTTCTCCGCTATCGGCATCGCCGTCGCCATCGGCGTTTCTGTCCTCGGCGCGGCCTGGGGGATTTATATAACTGGGAGCAGTTTGATCGGTGCAGCAATCAAGGCTCCTCGAATCACTTCTAAGAATCTCATTAGTGTTATTTTTTGTGAAGCTGTTGCTATATATGGTGTTATTGTTGCAATTATTCTACAAACAAAGTTGGAGAGTGTTCCAACGTCAAAGATATATGCGCCCGAGTCTCTTAGAGCTGGATATGCAATCTTTGCCTCTGGGATTATCGTGGGCTTTGCCAACCTTGTCTGCGGGTTATGTGTGGGAATTATTGGAAGCAGCTGTGCATTGTCTGATGCCCAAAACTCCTCACTTTTTGTGAAGATCCTTGTGATTGAGATCTTCGGCAGCGCACTTGGATTGTTCGGAGTCATCGTGGGAATCATAATGTCAGCTCAAGCAACATGGCCTTCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0008553 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0015988 GO:0015991 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0097708 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

182

Amino Acids

18.44

Weight (kDa)

8.98

Isoelectric Point (pI)

28.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	29 - 88	9.7e-17	ATP synthase subunit C
ATP-synt_C	PF00137	113 - 172	2e-12	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25610 AT2G25610 AT4G32530 AT4G32530
fragaria_vesca	FvH4_2g29800
malus_domestica	MD08G1141700.v1.1 MD15G1118200.v1.1
prunus_persica	Prupe.1G471600_v2.0.a1 Prupe.1G471600_v2.0.a1 Prupe.1G471600_v2.0.a1
pyrus_communis	pycom08g11960
rosa_chinensis	RchiOBHm_Chr6g0298821
rosa_laevigata	RLG00000011482
rosa_multiflora	Rmu_ssc0000397.1_g000018
rosa_roxburghii	Rroxscaffold_7G00169300
rosa_rugosa	Rorug06G0283100
rosa_samantha	Rh6AG394800 Rh6BG402700 Rh6CG408400 Rh6DG395200
rosa_wichuraiana	Rw5G000010 Rw6G034540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	48, 125
AciI	CCGC	4 cut(s)	20, 81, 125, 378
AclWI	GGATC	1 cut(s)	445
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	1 cut(s)	540
AjnI	CCWGG	2 cut(s)	38, 128
AluBI	AGCT	5 cut(s)	36, 227, 323, 408, 521
AluI	AGCT	5 cut(s)	36, 227, 323, 408, 521
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	1 cut(s)	318
AlwI	GGATC	1 cut(s)	445
Ama87I	CYCGRG	2 cut(s)	31, 308
AoxI	GGCC	2 cut(s)	126, 533
ApeKI	GCWGC	4 cut(s)	11, 167, 405, 474
Asp700I	GAANNNNTTC	1 cut(s)	190
AspLEI	GCGC	4 cut(s)	50, 125, 307, 479
AvaI	CYCGRG	2 cut(s)	31, 308
BaeGI	GKGCMC	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	4 cut(s)	23, 179, 417, 486
BccI	CCATC	1 cut(s)	110
BceAI	ACGGC	1 cut(s)	80
BcgI	CGANNNNNNTGC	4 cut(s)	79, 113, 142, 176
BciT130I	CCWGG	2 cut(s)	40, 130
BcoDI	GTCTC	1 cut(s)	318
BglII	AGATCT	2 cut(s)	60, 465
BisI	GCNGC	5 cut(s)	12, 126, 168, 406, 475
BlsI	GCNGC	5 cut(s)	13, 127, 169, 407, 476
Bme1390I	CCNGG	2 cut(s)	40, 130
BmeT110I	CYCGRG	2 cut(s)	31, 308
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	2 cut(s)	40, 130
BmrI	ACTGGG	1 cut(s)	156
BmsI	GCATC	2 cut(s)	99, 412
BmuI	ACTGGG	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	507
BsaBI	GATNNNNATC	1 cut(s)	464
BsaJI	CCNNGG	3 cut(s)	39, 118, 129
BsaXI	ACNNNNNCTCC	6 cut(s)	20, 50, 62, 92, 486, 516
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	151
Bse8I	GATNNNNATC	1 cut(s)	464
BseBI	CCWGG	2 cut(s)	40, 130
BseDI	CCNNGG	3 cut(s)	39, 118, 129
BseJI	GATNNNNATC	1 cut(s)	464
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseNI	ACTGG	1 cut(s)	151
BseRI	GAGGAG	2 cut(s)	171, 424
BseSI	GKGCMC	1 cut(s)	46
BseXI	GCAGC	4 cut(s)	23, 179, 417, 486
BsgI	GTGCAG	2 cut(s)	30, 186
Bsh1236I	CGCG	2 cut(s)	48, 125
BshFI	GGCC	2 cut(s)	128, 535
BsiHKAI	GWGCWC	1 cut(s)	38
BsiHKCI	CYCGRG	2 cut(s)	31, 308
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	318
BsnI	GGCC	2 cut(s)	128, 535
BsoBI	CYCGRG	2 cut(s)	31, 308
Bsp1286I	GDGCHC	2 cut(s)	38, 46
Bsp143I	GATC	4 cut(s)	60, 159, 450, 465
BspACI	CCGC	4 cut(s)	20, 81, 125, 378
BspANI	GGCC	2 cut(s)	128, 535
BspFNI	CGCG	2 cut(s)	48, 125
BspLI	GGNNCC	1 cut(s)	180
BspPI	GGATC	1 cut(s)	445
BsrI	ACTGG	1 cut(s)	151
BssECI	CCNNGG	3 cut(s)	39, 118, 129
BssMI	GATC	4 cut(s)	60, 159, 450, 465
Bst2UI	CCWGG	2 cut(s)	40, 130
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	2 cut(s)	195, 317
BstFNI	CGCG	2 cut(s)	48, 125
BstHHI	GCGC	4 cut(s)	50, 125, 307, 479
BstKTI	GATC	4 cut(s)	63, 162, 453, 468
BstMAI	GTCTC	1 cut(s)	318
BstMBI	GATC	4 cut(s)	60, 159, 450, 465
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 176, 329, 338
BstNI	CCWGG	2 cut(s)	40, 130
BstSCI	CCNGG	2 cut(s)	38, 128
BstSLI	GKGCMC	1 cut(s)	46
BstUI	CGCG	2 cut(s)	48, 125
BstV1I	GCAGC	4 cut(s)	23, 179, 417, 486
BstX2I	RGATCY	3 cut(s)	60, 450, 465
BstYI	RGATCY	3 cut(s)	60, 450, 465
BsuRI	GGCC	2 cut(s)	128, 535
BtgZI	GCGATG	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	46
CfoI	GCGC	4 cut(s)	50, 125, 307, 479
CviAII	CATG	1 cut(s)	531
CviJI	RGCY	9 cut(s)	36, 128, 179, 227, 323, 360, 408, 521, 535
CviKI_1	RGCY	9 cut(s)	36, 128, 179, 227, 323, 360, 408, 521, 535
DdeI	CTNAG	2 cut(s)	195, 317
DpnI	GATC	4 cut(s)	62, 161, 452, 467
DpnII	GATC	4 cut(s)	60, 159, 450, 465
Ecl136II	GAGCTC	1 cut(s)	36
Eco24I	GRGCYC	1 cut(s)	38
Eco53kI	GAGCTC	1 cut(s)	36
Eco88I	CYCGRG	2 cut(s)	31, 308
EcoICRI	GAGCTC	1 cut(s)	36
EcoRII	CCWGG	2 cut(s)	38, 128
EcoT38I	GRGCYC	1 cut(s)	38
FaeI	CATG	1 cut(s)	534
FatI	CATG	1 cut(s)	530
FauI	CCCGC	1 cut(s)	371
Fnu4HI	GCNGC	5 cut(s)	12, 126, 168, 406, 475
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	5 cut(s)	12, 126, 168, 406, 475
GlaI	GCGC	4 cut(s)	49, 124, 306, 478
GluI	GCNGC	5 cut(s)	12, 126, 168, 406, 475
HaeIII	GGCC	2 cut(s)	128, 535
HhaI	GCGC	4 cut(s)	50, 125, 307, 479
Hin1II	CATG	1 cut(s)	534
Hin6I	GCGC	4 cut(s)	48, 123, 305, 477
HinP1I	GCGC	4 cut(s)	48, 123, 305, 477
HinfI	GANTC	5 cut(s)	186, 199, 311, 495, 507
Hpy188I	TCNGA	2 cut(s)	421, 494
Hpy188III	TCNNGA	1 cut(s)	58
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	546
HpyCH4IV	ACGT	1 cut(s)	290
HpyCH4V	TGCA	5 cut(s)	11, 167, 254, 332, 413
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 176, 329, 338
HpyF3I	CTNAG	2 cut(s)	195, 317
HpySE526I	ACGT	1 cut(s)	290
Hsp92II	CATG	1 cut(s)	534
HspAI	GCGC	4 cut(s)	48, 123, 305, 477
Kzo9I	GATC	4 cut(s)	60, 159, 450, 465
LmnI	GCTCC	3 cut(s)	41, 150, 184
LpnPI	CCDG	8 cut(s)	25, 52, 71, 115, 132, 142, 309, 330
Lsp1109I	GCAGC	4 cut(s)	23, 179, 417, 486
LweI	GCATC	2 cut(s)	99, 412
MaeII	ACGT	1 cut(s)	290
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	4 cut(s)	62, 161, 452, 467
MboI	GATC	4 cut(s)	60, 159, 450, 465
MboII	GAAGA	2 cut(s)	460, 460
MflI	RGATCY	3 cut(s)	60, 450, 465
MhlI	GDGCHC	2 cut(s)	38, 46
MluCI	AATT	2 cut(s)	255, 393
MlyI	GAGTC	2 cut(s)	320, 504
MmeI	TCCRAC	2 cut(s)	255, 311
MnlI	CCTC	5 cut(s)	62, 128, 192, 352, 445
MroXI	GAANNNNTTC	1 cut(s)	190
MspA1I	CMGCKG	1 cut(s)	408
MspR9I	CCNGG	2 cut(s)	40, 130
MvaI	CCWGG	2 cut(s)	40, 130
MvnI	CGCG	2 cut(s)	48, 125
MwoI	GCNNNNNNNGC	4 cut(s)	17, 176, 329, 338
NdeII	GATC	4 cut(s)	60, 159, 450, 465
NlaIII	CATG	1 cut(s)	534
NlaIV	GGNNCC	1 cut(s)	180
NmeAIII	GCCGAG	1 cut(s)	99
PaeR7I	CTCGAG	1 cut(s)	31
PcsI	WCGNNNNNNNCGW	3 cut(s)	93, 105, 498
PdmI	GAANNNNTTC	1 cut(s)	190
PfeI	GAWTC	3 cut(s)	186, 199, 507
PkrI	GCNGC	5 cut(s)	13, 127, 169, 407, 476
PleI	GAGTC	2 cut(s)	319, 503
PpsI	GAGTC	2 cut(s)	319, 503
Psp124BI	GAGCTC	1 cut(s)	38
Psp6I	CCWGG	2 cut(s)	38, 128
PspGI	CCWGG	2 cut(s)	38, 128
PspN4I	GGNNCC	1 cut(s)	180
PspXI	VCTCGAGB	1 cut(s)	31
PsuI	RGATCY	3 cut(s)	60, 450, 465
PvuII	CAGCTG	1 cut(s)	408
SacI	GAGCTC	1 cut(s)	38
SatI	GCNGC	5 cut(s)	12, 126, 168, 406, 475
Sau3AI	GATC	4 cut(s)	60, 159, 450, 465
SchI	GAGTC	2 cut(s)	320, 504
ScrFI	CCNGG	2 cut(s)	40, 130
SduI	GDGCHC	2 cut(s)	38, 46
SetI	ASST	8 cut(s)	10, 38, 229, 293, 325, 372, 410, 523
SfaNI	GCATC	2 cut(s)	99, 412
Sfr274I	CTCGAG	1 cut(s)	31
SlaI	CTCGAG	1 cut(s)	31
SmlI	CTYRAG	2 cut(s)	31, 522
SmoI	CTYRAG	2 cut(s)	31, 522
Sse9I	AATT	2 cut(s)	255, 393
SsiI	CCGC	4 cut(s)	20, 81, 125, 378
SstI	GAGCTC	1 cut(s)	38
StyD4I	CCNGG	2 cut(s)	38, 128
TaiI	ACGT	1 cut(s)	293
TaqI	TCGA	2 cut(s)	32, 184
TasI	AATT	2 cut(s)	255, 393
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	3 cut(s)	186, 199, 507
TseI	GCWGC	4 cut(s)	11, 167, 405, 474
XhoI	CTCGAG	1 cut(s)	31
XmnI	GAANNNNTTC	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.