Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0009352

Physical Location & Seq

Genomic Coordinates Forward (+)

21543 .. 23684

Gene Structure 2142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G000010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGGAGTATCCGCAGGTGTAGCTCATAGTAACCCTGCAATTTGCTTACTGATGCAAAGTTCAGTTGAATTTAGAATCAAGAAGCTCGAGAGTGTTCCTACTTCAAGGATATATGAACCTGAATCACTTGGAGCTGGATATGCAATCTTTGGGTCTGGAATCATTGTGAGATTTGCAAACGTTGTCTGCGGTGACGGGTTATGTGTGGGAATTATTGGAAGCAGCTGTGCATTGTCCGATGCCCAAAACTCCACACTTTTTGTGAAGATCCTTGTGATTGAGATCTTTGGCAGTGCCCTTGGATTATTTGGAGTAATTGTTGGAATCATAATGTCAGCTCAAGCAACATGGTCTACAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0008553 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0015988 GO:0015991 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0097708 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

120

Amino Acids

12.43

Weight (kDa)

6.53

Isoelectric Point (pI)

31.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	50 - 111	2e-09	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25610 AT2G25610 AT4G32530 AT4G32530
fragaria_vesca	FvH4_2g29800
malus_domestica	MD08G1141700.v1.1 MD15G1118200.v1.1
prunus_persica	Prupe.1G471600_v2.0.a1 Prupe.1G471600_v2.0.a1 Prupe.1G471600_v2.0.a1
pyrus_communis	pycom08g11960
rosa_chinensis	RchiOBHm_Chr6g0298821
rosa_laevigata	RLG00000011482
rosa_multiflora	Rmu_ssc0000397.1_g000018
rosa_roxburghii	Rroxscaffold_7G00169300
rosa_rugosa	Rorug06G0283100
rosa_samantha	Rh6AG394800 Rh6BG402700 Rh6CG408400 Rh6DG395200
rosa_wichuraiana	Rw5G000010 Rw6G034540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	5
Acc36I	ACCTGC	1 cut(s)	5
AccI	GTMKAC	1 cut(s)	353
AciI	CCGC	2 cut(s)	12, 189
AclI	AACGTT	1 cut(s)	180
AclWI	GGATC	1 cut(s)	262
AcsI	RAATTY	1 cut(s)	68
AgsI	TTSAA	2 cut(s)	68, 105
AluBI	AGCT	5 cut(s)	23, 85, 134, 225, 338
AluI	AGCT	5 cut(s)	23, 85, 134, 225, 338
AlwI	GGATC	1 cut(s)	262
Ama87I	CYCGRG	1 cut(s)	86
ApeKI	GCWGC	1 cut(s)	222
ApoI	RAATTY	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	203
AvaI	CYCGRG	1 cut(s)	86
BaeGI	GKGCMC	1 cut(s)	298
BbvI	GCAGC	1 cut(s)	234
BciVI	GTATCC	1 cut(s)	19
BfuAI	ACCTGC	1 cut(s)	5
BfuI	GTATCC	1 cut(s)	19
BglII	AGATCT	1 cut(s)	282
BisI	GCNGC	1 cut(s)	223
BlsI	GCNGC	1 cut(s)	224
BmeT110I	CYCGRG	1 cut(s)	86
BmsI	GCATC	2 cut(s)	42, 229
BpuEI	CTTGAG	1 cut(s)	324
BsaBI	GATNNNNATC	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	298
BsaXI	ACNNNNNCTCC	2 cut(s)	303, 333
Bse8I	GATNNNNATC	1 cut(s)	281
BseDI	CCNNGG	1 cut(s)	298
BseJI	GATNNNNATC	1 cut(s)	281
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	234
BsiHKCI	CYCGRG	1 cut(s)	86
BsoBI	CYCGRG	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	2 cut(s)	267, 282
BspACI	CCGC	2 cut(s)	12, 189
BspMI	ACCTGC	1 cut(s)	5
BspPI	GGATC	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	298
BssMI	GATC	2 cut(s)	267, 282
BssT1I	CCWWGG	1 cut(s)	298
BstKTI	GATC	2 cut(s)	270, 285
BstMBI	GATC	2 cut(s)	267, 282
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 140
BstSLI	GKGCMC	1 cut(s)	298
BstV1I	GCAGC	1 cut(s)	234
BstX2I	RGATCY	2 cut(s)	267, 282
BstYI	RGATCY	2 cut(s)	267, 282
BsuI	GTATCC	1 cut(s)	19
BtsI	GCAGTG	1 cut(s)	298
BtsIMutI	CAGTG	1 cut(s)	298
BveI	ACCTGC	1 cut(s)	5
CspCI	CAANNNNNGTGG	2 cut(s)	241, 276
CviAII	CATG	1 cut(s)	348
CviJI	RGCY	5 cut(s)	23, 85, 134, 225, 338
CviKI_1	RGCY	5 cut(s)	23, 85, 134, 225, 338
DpnI	GATC	2 cut(s)	269, 284
DpnII	GATC	2 cut(s)	267, 282
Eco130I	CCWWGG	1 cut(s)	298
Eco88I	CYCGRG	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	298
FaeI	CATG	1 cut(s)	351
FaiI	YATR	7 cut(s)	27, 112, 114, 141, 202, 329, 349
FatI	CATG	1 cut(s)	347
FblI	GTMKAC	1 cut(s)	353
Fnu4HI	GCNGC	1 cut(s)	223
Fsp4HI	GCNGC	1 cut(s)	223
GluI	GCNGC	1 cut(s)	223
Hin1II	CATG	1 cut(s)	351
HinfI	GANTC	4 cut(s)	75, 122, 159, 324
HphI	GGTGA	1 cut(s)	203
Hpy166II	GTNNAC	1 cut(s)	354
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	3 cut(s)	79, 88, 156
Hpy8I	GTNNAC	1 cut(s)	354
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	5 cut(s)	38, 55, 143, 176, 230
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 140
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	1 cut(s)	351
Kzo9I	GATC	2 cut(s)	267, 282
LmnI	GCTCC	1 cut(s)	131
LpnPI	CCDG	4 cut(s)	48, 120, 132, 141
Lsp1109I	GCAGC	1 cut(s)	234
LweI	GCATC	2 cut(s)	42, 229
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	2 cut(s)	29, 191
MalI	GATC	2 cut(s)	269, 284
MboI	GATC	2 cut(s)	267, 282
MboII	GAAGA	1 cut(s)	277
MflI	RGATCY	2 cut(s)	267, 282
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	4 cut(s)	39, 68, 210, 315
MmeI	TCCRAC	1 cut(s)	301
MspA1I	CMGCKG	1 cut(s)	225
MwoI	GCNNNNNNNGC	2 cut(s)	20, 140
NdeII	GATC	2 cut(s)	267, 282
NlaIII	CATG	1 cut(s)	351
NmuCI	GTSAC	1 cut(s)	191
PaeR7I	CTCGAG	1 cut(s)	86
PaqCI	CACCTGC	1 cut(s)	5
PfeI	GAWTC	4 cut(s)	75, 122, 159, 324
PkrI	GCNGC	1 cut(s)	224
Psp1406I	AACGTT	1 cut(s)	180
PsuI	RGATCY	2 cut(s)	267, 282
PvuII	CAGCTG	1 cut(s)	225
SatI	GCNGC	1 cut(s)	223
Sau3AI	GATC	2 cut(s)	267, 282
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	8 cut(s)	19, 25, 87, 121, 136, 183, 227, 340
SfaNI	GCATC	2 cut(s)	42, 229
Sfr274I	CTCGAG	1 cut(s)	86
SlaI	CTCGAG	1 cut(s)	86
SmlI	CTYRAG	2 cut(s)	86, 339
SmoI	CTYRAG	2 cut(s)	86, 339
Sse9I	AATT	4 cut(s)	39, 68, 210, 315
SsiI	CCGC	2 cut(s)	12, 189
StyI	CCWWGG	1 cut(s)	298
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	1 cut(s)	87
TasI	AATT	4 cut(s)	39, 68, 210, 315
TfiI	GAWTC	4 cut(s)	75, 122, 159, 324
TscAI	CASTG	1 cut(s)	298
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	1 cut(s)	222
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	1 cut(s)	129
TspRI	CASTG	1 cut(s)	298
XapI	RAATTY	1 cut(s)	68
XhoI	CTCGAG	1 cut(s)	86
XmiI	GTMKAC	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.