Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009352

Physical Location & Seq

Genomic Coordinates Forward (+)

39246901 .. 39249372

Gene Structure 2472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G471600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTCAGGTGCAGTAGTGGTGGGTTACTCGAGCTCATGGTCGCGCGCCCTAGTCCAGATCTCTCCGTACACATTCTCCGCCATCGGAATCGCCGTTGCCATCGGCGTCTCTGTTCTCGGCGCCGCCTGGGGAATTTATATCACTGGCAGCAGTTTGATCGGTGCAGCAATCAAGGCCCCTCGTATCACTTCTAAGAATCTCATTAGTGTAATCTTTTGTGAAGCTGTTGCTATATATGGTGTTATTGTTGCGATTATTCTACAAACAAAGTTGGAGAATGTTCCAGCATCAAAGATATATGCACCTGAGTCTCTTAGAGCTGGATATGCTATCTTCGCCTCTGGGATTATCGTGGGCTTTGCAAACCTTGTCTGCGGTTTATGTGTGGGAATCATAGGAAGCAGCTGTGCATTGTCTGATGCCCAAAACTCTTCACTTTTTGTGAAGATCCTTGTGATTGAGATCTTTGGCAGCGCACTTGGATTGTTTGGAGTGATTGTGGGAATCATAATGTCAGCTCAAGCAACATGGCCTTCGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0008553 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0015988 GO:0015991 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0097708 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

181

Amino Acids

18.41

Weight (kDa)

8.98

Isoelectric Point (pI)

31.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25610 AT2G25610 AT4G32530 AT4G32530
fragaria_vesca	FvH4_2g29800
malus_domestica	MD08G1141700.v1.1 MD15G1118200.v1.1
prunus_persica	Prupe.1G471600_v2.0.a1 Prupe.1G471600_v2.0.a1 Prupe.1G471600_v2.0.a1
pyrus_communis	pycom08g11960
rosa_chinensis	RchiOBHm_Chr6g0298821
rosa_laevigata	RLG00000011482
rosa_multiflora	Rmu_ssc0000397.1_g000018
rosa_roxburghii	Rroxscaffold_7G00169300
rosa_rugosa	Rorug06G0283100
rosa_samantha	Rh6AG394800 Rh6BG402700 Rh6CG408400 Rh6DG395200
rosa_wichuraiana	Rw5G000010 Rw6G034540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	119
AccII	CGCG	2 cut(s)	43, 45
AciI	CCGC	3 cut(s)	78, 123, 375
AclWI	GGATC	1 cut(s)	442
AcsI	RAATTY	1 cut(s)	132
AcyI	GRCGYC	2 cut(s)	105, 120
AfaI	GTAC	1 cut(s)	68
AjnI	CCWGG	1 cut(s)	125
AluBI	AGCT	5 cut(s)	33, 224, 320, 405, 518
AluI	AGCT	5 cut(s)	33, 224, 320, 405, 518
Alw21I	GWGCWC	1 cut(s)	35
Alw26I	GTCTC	2 cut(s)	112, 315
AlwI	GGATC	1 cut(s)	442
Ama87I	CYCGRG	1 cut(s)	28
AoxI	GGCC	2 cut(s)	174, 530
ApeKI	GCWGC	4 cut(s)	147, 164, 402, 471
ApoI	RAATTY	1 cut(s)	132
AspLEI	GCGC	4 cut(s)	45, 47, 122, 476
AspS9I	GGNCC	1 cut(s)	175
AsuII	TTCGAA	1 cut(s)	536
AvaI	CYCGRG	1 cut(s)	28
BanI	GGYRCC	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	35
BbvI	GCAGC	4 cut(s)	159, 176, 414, 483
BccI	CCATC	2 cut(s)	89, 107
BceAI	ACGGC	1 cut(s)	77
BcgI	CGANNNNNNTGC	2 cut(s)	139, 173
BciT130I	CCWGG	1 cut(s)	127
BcoDI	GTCTC	2 cut(s)	112, 315
BfaI	CTAG	1 cut(s)	50
BfoI	RGCGCY	1 cut(s)	123
BglII	AGATCT	2 cut(s)	57, 462
BisI	GCNGC	5 cut(s)	123, 148, 165, 403, 472
BlsI	GCNGC	5 cut(s)	124, 149, 166, 404, 473
Bme1390I	CCNGG	1 cut(s)	127
BmeT110I	CYCGRG	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	2 cut(s)	121, 177
BmrFI	CCNGG	1 cut(s)	127
BmsI	GCATC	2 cut(s)	296, 409
Bpu14I	TTCGAA	1 cut(s)	536
BpuEI	CTTGAG	1 cut(s)	504
BsaBI	GATNNNNATC	1 cut(s)	461
BsaHI	GRCGYC	2 cut(s)	105, 120
BsaJI	CCNNGG	1 cut(s)	126
BsaXI	ACNNNNNCTCC	4 cut(s)	59, 89, 483, 513
Bse1I	ACTGG	1 cut(s)	148
Bse8I	GATNNNNATC	1 cut(s)	461
BseBI	CCWGG	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	126
BseJI	GATNNNNATC	1 cut(s)	461
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	1 cut(s)	148
BsePI	GCGCGC	1 cut(s)	43
BseXI	GCAGC	4 cut(s)	159, 176, 414, 483
BsgI	GTGCAG	2 cut(s)	30, 183
Bsh1236I	CGCG	2 cut(s)	43, 45
BshFI	GGCC	2 cut(s)	176, 532
BshNI	GGYRCC	1 cut(s)	119
BsiHKAI	GWGCWC	1 cut(s)	35
BsiHKCI	CYCGRG	1 cut(s)	28
BsmAI	GTCTC	2 cut(s)	112, 315
BsmBI	CGTCTC	1 cut(s)	112
BsnI	GGCC	2 cut(s)	176, 532
BsoBI	CYCGRG	1 cut(s)	28
Bsp119I	TTCGAA	1 cut(s)	536
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	4 cut(s)	57, 156, 447, 462
BspACI	CCGC	3 cut(s)	78, 123, 375
BspANI	GGCC	2 cut(s)	176, 532
BspCNI	CTCAG	1 cut(s)	298
BspFNI	CGCG	2 cut(s)	43, 45
BspLI	GGNNCC	2 cut(s)	121, 177
BspPI	GGATC	1 cut(s)	442
BspT104I	TTCGAA	1 cut(s)	536
BspT107I	GGYRCC	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	126
BssHII	GCGCGC	1 cut(s)	43
BssMI	GATC	4 cut(s)	57, 156, 447, 462
BssNI	GRCGYC	2 cut(s)	105, 120
Bst2UI	CCWGG	1 cut(s)	127
Bst6I	CTCTTC	1 cut(s)	436
BstACI	GRCGYC	2 cut(s)	105, 120
BstBI	TTCGAA	1 cut(s)	536
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	3 cut(s)	192, 306, 314
BstFNI	CGCG	2 cut(s)	43, 45
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	4 cut(s)	45, 47, 122, 476
BstKTI	GATC	4 cut(s)	60, 159, 450, 465
BstMAI	GTCTC	2 cut(s)	112, 315
BstMBI	GATC	4 cut(s)	57, 156, 447, 462
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 326, 335
BstNI	CCWGG	1 cut(s)	127
BstSCI	CCNGG	1 cut(s)	125
BstUI	CGCG	2 cut(s)	43, 45
BstV1I	GCAGC	4 cut(s)	159, 176, 414, 483
BstX2I	RGATCY	3 cut(s)	57, 447, 462
BstYI	RGATCY	3 cut(s)	57, 447, 462
BsuRI	GGCC	2 cut(s)	176, 532
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	1 cut(s)	45
CfoI	GCGC	4 cut(s)	45, 47, 122, 476
Cfr13I	GGNCC	1 cut(s)	175
CseI	GACGC	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	2 cut(s)	36, 528
CviJI	RGCY	8 cut(s)	33, 176, 224, 320, 357, 405, 518, 532
CviKI_1	RGCY	8 cut(s)	33, 176, 224, 320, 357, 405, 518, 532
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	3 cut(s)	192, 306, 314
DinI	GGCGCC	1 cut(s)	121
DpnI	GATC	4 cut(s)	59, 158, 449, 464
DpnII	GATC	4 cut(s)	57, 156, 447, 462
Eam1104I	CTCTTC	1 cut(s)	436
EarI	CTCTTC	1 cut(s)	436
EciI	GGCGGA	1 cut(s)	67
Ecl136II	GAGCTC	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	35
Eco53kI	GAGCTC	1 cut(s)	33
Eco88I	CYCGRG	1 cut(s)	28
EcoICRI	GAGCTC	1 cut(s)	33
EcoO109I	RGGNCCY	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	125
EcoT38I	GRGCYC	1 cut(s)	35
EgeI	GGCGCC	1 cut(s)	121
EheI	GGCGCC	1 cut(s)	121
Esp3I	CGTCTC	1 cut(s)	112
FaeI	CATG	2 cut(s)	39, 531
FatI	CATG	2 cut(s)	35, 527
Fnu4HI	GCNGC	5 cut(s)	123, 148, 165, 403, 472
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	5 cut(s)	123, 148, 165, 403, 472
FspBI	CTAG	1 cut(s)	50
GlaI	GCGC	4 cut(s)	44, 46, 121, 475
GluI	GCNGC	5 cut(s)	123, 148, 165, 403, 472
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	2 cut(s)	176, 532
HgaI	GACGC	1 cut(s)	94
HhaI	GCGC	4 cut(s)	45, 47, 122, 476
Hin1I	GRCGYC	2 cut(s)	105, 120
Hin1II	CATG	2 cut(s)	39, 531
Hin6I	GCGC	4 cut(s)	43, 45, 120, 474
HinP1I	GCGC	4 cut(s)	43, 45, 120, 474
HinfI	GANTC	5 cut(s)	87, 196, 308, 390, 504
Hpy166II	GTNNAC	1 cut(s)	69
Hpy188I	TCNGA	2 cut(s)	86, 418
Hpy188III	TCNNGA	1 cut(s)	55
Hpy8I	GTNNAC	1 cut(s)	69
HpyAV	CCTTC	1 cut(s)	543
HpyCH4V	TGCA	5 cut(s)	11, 164, 302, 362, 410
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 326, 335
HpyF3I	CTNAG	3 cut(s)	192, 306, 314
Hsp92I	GRCGYC	2 cut(s)	105, 120
Hsp92II	CATG	2 cut(s)	39, 531
HspAI	GCGC	4 cut(s)	43, 45, 120, 474
KasI	GGCGCC	1 cut(s)	119
Kzo9I	GATC	4 cut(s)	57, 156, 447, 462
LpnPI	CCDG	8 cut(s)	68, 112, 129, 139, 297, 306, 318, 327
Lsp1109I	GCAGC	4 cut(s)	159, 176, 414, 483
LweI	GCATC	2 cut(s)	296, 409
MaeI	CTAG	1 cut(s)	50
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	4 cut(s)	59, 158, 449, 464
MboI	GATC	4 cut(s)	57, 156, 447, 462
MboII	GAAGA	3 cut(s)	325, 423, 457
MflI	RGATCY	3 cut(s)	57, 447, 462
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	1 cut(s)	132
Mly113I	GGCGCC	1 cut(s)	120
MlyI	GAGTC	1 cut(s)	317
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	2 cut(s)	189, 349
MspA1I	CMGCKG	1 cut(s)	405
MspR9I	CCNGG	1 cut(s)	127
MvaI	CCWGG	1 cut(s)	127
MvnI	CGCG	2 cut(s)	43, 45
MwoI	GCNNNNNNNGC	3 cut(s)	173, 326, 335
NarI	GGCGCC	1 cut(s)	120
NdeII	GATC	4 cut(s)	57, 156, 447, 462
NlaIII	CATG	2 cut(s)	39, 531
NlaIV	GGNNCC	2 cut(s)	121, 177
NmeAIII	GCCGAG	1 cut(s)	96
NspV	TTCGAA	1 cut(s)	536
PaeR7I	CTCGAG	1 cut(s)	28
PauI	GCGCGC	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PfeI	GAWTC	4 cut(s)	87, 196, 390, 504
PkrI	GCNGC	5 cut(s)	124, 149, 166, 404, 473
PleI	GAGTC	1 cut(s)	316
PluTI	GGCGCC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	316
Psp124BI	GAGCTC	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	125
PspN4I	GGNNCC	2 cut(s)	121, 177
PspPI	GGNCC	1 cut(s)	175
PspXI	VCTCGAGB	1 cut(s)	28
PsuI	RGATCY	3 cut(s)	57, 447, 462
PteI	GCGCGC	1 cut(s)	43
PvuII	CAGCTG	1 cut(s)	405
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
SacI	GAGCTC	1 cut(s)	35
SatI	GCNGC	5 cut(s)	123, 148, 165, 403, 472
Sau3AI	GATC	4 cut(s)	57, 156, 447, 462
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	1 cut(s)	127
SduI	GDGCHC	1 cut(s)	35
SetI	ASST	8 cut(s)	10, 35, 226, 307, 322, 369, 407, 520
SfaNI	GCATC	2 cut(s)	296, 409
SfoI	GGCGCC	1 cut(s)	121
Sfr274I	CTCGAG	1 cut(s)	28
SfuI	TTCGAA	1 cut(s)	536
SlaI	CTCGAG	1 cut(s)	28
SmlI	CTYRAG	2 cut(s)	28, 519
SmoI	CTYRAG	2 cut(s)	28, 519
Sse9I	AATT	1 cut(s)	132
SsiI	CCGC	3 cut(s)	78, 123, 375
SspDI	GGCGCC	1 cut(s)	119
SspMI	CTAG	1 cut(s)	50
SstI	GAGCTC	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	125
TaqI	TCGA	2 cut(s)	29, 536
TasI	AATT	1 cut(s)	132
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	4 cut(s)	87, 196, 390, 504
TscAI	CASTG	1 cut(s)	148
TseI	GCWGC	4 cut(s)	147, 164, 402, 471
TspGWI	ACGGA	1 cut(s)	54
TspRI	CASTG	1 cut(s)	148
XapI	RAATTY	1 cut(s)	132
XhoI	CTCGAG	1 cut(s)	28
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.