Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0009352

Physical Location & Seq

Genomic Coordinates Forward (+)

8497536 .. 8499377

Gene Structure 1842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1118200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTCAGGTGCAGCAATAGCGGTGGGTTACTCGAGCTCCTGGGCACGCGCCCTCGTCCAGATCTCTCCATACACATTCTCCGCTATCGGTATCGCCGTCGCCATCGGCGTCTCCGTCCTCGGCGCCGCCTGGGGGATTTATATTACTGGGAGCAGTTTGATCGGTGCAGCAATCAAGGCCCCTCGTATCACTTCTAAGAATCTCATTAGTGTTATTTTTTGTGAAGCTGTTGCTATATATGGTGTTATTGTTGCAATTATTCTACAAACAAAGTTGGAGAGTGTTCCAACATCGAAGATGCATGCACCTGAGTCTCTTAGAGCTGGATATGCAATCTTTGCCTCGGGGATAATCGTGGGCTTTGCAAACCTTGTCTGCGGGTTATGCGTGGGAATTATTGGAAGCAGCTGCGCATTGTCCGATGCCCAAAACTCCTCGCTTTTCGTGAAGATCCTTGTGATCGAAATCTTTGGCAGTGCACTTGGATTGTTTGGAGTGATTGTGGGAATCATAATGTCAGCTCAAGCTACATGGCCTTCGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0008553 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0015988 GO:0015991 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0097708 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

182

Amino Acids

18.44

Weight (kDa)

9.0

Isoelectric Point (pI)

33.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	29 - 88	9.7e-17	ATP synthase subunit C
ATP-synt_C	PF00137	113 - 172	2e-12	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25610 AT2G25610 AT4G32530 AT4G32530
fragaria_vesca	FvH4_2g29800
malus_domestica	MD08G1141700.v1.1 MD15G1118200.v1.1
prunus_persica	Prupe.1G471600_v2.0.a1 Prupe.1G471600_v2.0.a1 Prupe.1G471600_v2.0.a1
pyrus_communis	pycom08g11960
rosa_chinensis	RchiOBHm_Chr6g0298821
rosa_laevigata	RLG00000011482
rosa_multiflora	Rmu_ssc0000397.1_g000018
rosa_roxburghii	Rroxscaffold_7G00169300
rosa_rugosa	Rorug06G0283100
rosa_samantha	Rh6AG394800 Rh6BG402700 Rh6CG408400 Rh6DG395200
rosa_wichuraiana	Rw5G000010 Rw6G034540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	412
AccB1I	GGYRCC	1 cut(s)	122
AccII	CGCG	1 cut(s)	48
AciI	CCGC	4 cut(s)	20, 81, 126, 378
AclWI	GGATC	1 cut(s)	445
AcyI	GRCGYC	2 cut(s)	108, 123
AfiI	CCNNNNNNNGG	1 cut(s)	132
AjnI	CCWGG	2 cut(s)	38, 128
AluBI	AGCT	6 cut(s)	36, 227, 323, 408, 521, 527
AluI	AGCT	6 cut(s)	36, 227, 323, 408, 521, 527
Alw21I	GWGCWC	2 cut(s)	38, 481
Alw26I	GTCTC	2 cut(s)	115, 318
Alw44I	GTGCAC	1 cut(s)	477
AlwI	GGATC	1 cut(s)	445
Ama87I	CYCGRG	2 cut(s)	31, 343
AoxI	GGCC	2 cut(s)	177, 533
ApaLI	GTGCAC	1 cut(s)	477
ApeKI	GCWGC	4 cut(s)	11, 167, 405, 408
AspLEI	GCGC	3 cut(s)	50, 125, 413
AspS9I	GGNCC	1 cut(s)	178
AsuII	TTCGAA	1 cut(s)	539
AvaI	CYCGRG	2 cut(s)	31, 343
BaeGI	GKGCMC	2 cut(s)	46, 481
BanI	GGYRCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	38
Bbv12I	GWGCWC	2 cut(s)	38, 481
BbvI	GCAGC	4 cut(s)	23, 179, 395, 417
BccI	CCATC	1 cut(s)	110
BceAI	ACGGC	1 cut(s)	80
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BciT130I	CCWGG	2 cut(s)	40, 130
BcoDI	GTCTC	2 cut(s)	115, 318
BfoI	RGCGCY	1 cut(s)	126
BglII	AGATCT	1 cut(s)	60
BisI	GCNGC	5 cut(s)	12, 126, 168, 406, 409
BlsI	GCNGC	5 cut(s)	13, 127, 169, 407, 410
Bme1390I	CCNGG	2 cut(s)	40, 130
BmeT110I	CYCGRG	2 cut(s)	31, 343
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	2 cut(s)	124, 180
BmrFI	CCNGG	2 cut(s)	40, 130
BmrI	ACTGGG	1 cut(s)	156
BmsI	GCATC	2 cut(s)	288, 412
BmuI	ACTGGG	1 cut(s)	156
Bpu14I	TTCGAA	1 cut(s)	539
BpuEI	CTTGAG	1 cut(s)	507
BsaBI	GATNNNNATC	1 cut(s)	464
BsaHI	GRCGYC	2 cut(s)	108, 123
BsaJI	CCNNGG	4 cut(s)	39, 118, 129, 342
BsaXI	ACNNNNNCTCC	6 cut(s)	20, 50, 62, 92, 486, 516
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
Bse1I	ACTGG	1 cut(s)	151
Bse8I	GATNNNNATC	1 cut(s)	464
BseBI	CCWGG	2 cut(s)	40, 130
BseDI	CCNNGG	4 cut(s)	39, 118, 129, 342
BseJI	GATNNNNATC	1 cut(s)	464
BseLI	CCNNNNNNNGG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	1 cut(s)	151
BseRI	GAGGAG	1 cut(s)	424
BseSI	GKGCMC	2 cut(s)	46, 481
BseXI	GCAGC	4 cut(s)	23, 179, 395, 417
BsgI	GTGCAG	2 cut(s)	30, 186
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	2 cut(s)	179, 535
BshNI	GGYRCC	1 cut(s)	122
BsiHKAI	GWGCWC	2 cut(s)	38, 481
BsiHKCI	CYCGRG	2 cut(s)	31, 343
BslI	CCNNNNNNNGG	1 cut(s)	132
BsmAI	GTCTC	2 cut(s)	115, 318
BsmBI	CGTCTC	1 cut(s)	115
BsnI	GGCC	2 cut(s)	179, 535
BsoBI	CYCGRG	2 cut(s)	31, 343
Bsp119I	TTCGAA	1 cut(s)	539
Bsp1286I	GDGCHC	3 cut(s)	38, 46, 481
Bsp143I	GATC	4 cut(s)	60, 159, 450, 459
BspACI	CCGC	4 cut(s)	20, 81, 126, 378
BspANI	GGCC	2 cut(s)	179, 535
BspCNI	CTCAG	1 cut(s)	301
BspFNI	CGCG	1 cut(s)	48
BspLI	GGNNCC	2 cut(s)	124, 180
BspPI	GGATC	1 cut(s)	445
BspT104I	TTCGAA	1 cut(s)	539
BspT107I	GGYRCC	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	151
BssECI	CCNNGG	4 cut(s)	39, 118, 129, 342
BssMI	GATC	4 cut(s)	60, 159, 450, 459
BssNI	GRCGYC	2 cut(s)	108, 123
Bst2UI	CCWGG	2 cut(s)	40, 130
BstACI	GRCGYC	2 cut(s)	108, 123
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstBI	TTCGAA	1 cut(s)	539
BstC8I	GCNNGC	2 cut(s)	46, 303
BstDEI	CTNAG	3 cut(s)	195, 309, 317
BstFNI	CGCG	1 cut(s)	48
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	3 cut(s)	50, 125, 413
BstKTI	GATC	4 cut(s)	63, 162, 453, 462
BstMAI	GTCTC	2 cut(s)	115, 318
BstMBI	GATC	4 cut(s)	60, 159, 450, 459
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 176, 329, 338, 384
BstNI	CCWGG	2 cut(s)	40, 130
BstNSI	RCATGY	1 cut(s)	305
BstSCI	CCNGG	2 cut(s)	38, 128
BstSLI	GKGCMC	2 cut(s)	46, 481
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	4 cut(s)	23, 179, 395, 417
BstX2I	RGATCY	2 cut(s)	60, 450
BstYI	RGATCY	2 cut(s)	60, 450
BsuRI	GGCC	2 cut(s)	179, 535
BtsI	GCAGTG	1 cut(s)	481
BtsIMutI	CAGTG	1 cut(s)	481
Cac8I	GCNNGC	2 cut(s)	46, 303
CfoI	GCGC	3 cut(s)	50, 125, 413
Cfr13I	GGNCC	1 cut(s)	178
CseI	GACGC	1 cut(s)	97
CspCI	CAANNNNNGTGG	1 cut(s)	38
CviAII	CATG	2 cut(s)	302, 531
CviJI	RGCY	9 cut(s)	36, 179, 227, 323, 360, 408, 521, 527, 535
CviKI_1	RGCY	9 cut(s)	36, 179, 227, 323, 360, 408, 521, 527, 535
DdeI	CTNAG	3 cut(s)	195, 309, 317
DinI	GGCGCC	1 cut(s)	124
DpnI	GATC	4 cut(s)	62, 161, 452, 461
DpnII	GATC	4 cut(s)	60, 159, 450, 459
Ecl136II	GAGCTC	1 cut(s)	36
Eco24I	GRGCYC	1 cut(s)	38
Eco53kI	GAGCTC	1 cut(s)	36
Eco88I	CYCGRG	2 cut(s)	31, 343
EcoICRI	GAGCTC	1 cut(s)	36
EcoO109I	RGGNCCY	1 cut(s)	178
EcoRII	CCWGG	2 cut(s)	38, 128
EcoT22I	ATGCAT	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	38
EgeI	GGCGCC	1 cut(s)	124
EheI	GGCGCC	1 cut(s)	124
Esp3I	CGTCTC	1 cut(s)	115
FaeI	CATG	2 cut(s)	305, 534
FatI	CATG	2 cut(s)	301, 530
FauI	CCCGC	1 cut(s)	371
Fnu4HI	GCNGC	5 cut(s)	12, 126, 168, 406, 409
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	5 cut(s)	12, 126, 168, 406, 409
FspI	TGCGCA	1 cut(s)	412
GlaI	GCGC	3 cut(s)	49, 124, 412
GluI	GCNGC	5 cut(s)	12, 126, 168, 406, 409
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	2 cut(s)	179, 535
HgaI	GACGC	1 cut(s)	97
HhaI	GCGC	3 cut(s)	50, 125, 413
Hin1I	GRCGYC	2 cut(s)	108, 123
Hin1II	CATG	2 cut(s)	305, 534
Hin6I	GCGC	3 cut(s)	48, 123, 411
HinP1I	GCGC	3 cut(s)	48, 123, 411
HinfI	GANTC	3 cut(s)	199, 311, 507
Hpy166II	GTNNAC	1 cut(s)	479
Hpy188I	TCNGA	1 cut(s)	421
Hpy188III	TCNNGA	2 cut(s)	58, 445
Hpy8I	GTNNAC	1 cut(s)	479
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	546
HpyCH4V	TGCA	8 cut(s)	11, 167, 254, 301, 305, 332, 365, 479
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 176, 329, 338, 384
HpyF3I	CTNAG	3 cut(s)	195, 309, 317
Hsp92I	GRCGYC	2 cut(s)	108, 123
Hsp92II	CATG	2 cut(s)	305, 534
HspAI	GCGC	3 cut(s)	48, 123, 411
KasI	GGCGCC	1 cut(s)	122
Kzo9I	GATC	4 cut(s)	60, 159, 450, 459
LmnI	GCTCC	2 cut(s)	41, 150
LpnPI	CCDG	8 cut(s)	25, 52, 71, 115, 132, 142, 309, 321
Lsp1109I	GCAGC	4 cut(s)	23, 179, 395, 417
LweI	GCATC	2 cut(s)	288, 412
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	4 cut(s)	62, 161, 452, 461
MboI	GATC	4 cut(s)	60, 159, 450, 459
MboII	GAAGA	2 cut(s)	307, 460
MflI	RGATCY	2 cut(s)	60, 450
MhlI	GDGCHC	3 cut(s)	38, 46, 481
MluCI	AATT	2 cut(s)	255, 393
Mly113I	GGCGCC	1 cut(s)	123
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	2 cut(s)	255, 311
MnlI	CCTC	5 cut(s)	62, 128, 192, 352, 445
Mph1103I	ATGCAT	1 cut(s)	303
MspA1I	CMGCKG	1 cut(s)	408
MspR9I	CCNGG	2 cut(s)	40, 130
MvaI	CCWGG	2 cut(s)	40, 130
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	5 cut(s)	17, 176, 329, 338, 384
NarI	GGCGCC	1 cut(s)	123
NdeII	GATC	4 cut(s)	60, 159, 450, 459
NlaIII	CATG	2 cut(s)	305, 534
NlaIV	GGNNCC	2 cut(s)	124, 180
NmeAIII	GCCGAG	1 cut(s)	99
NsbI	TGCGCA	1 cut(s)	412
NsiI	ATGCAT	1 cut(s)	303
NspI	RCATGY	1 cut(s)	305
NspV	TTCGAA	1 cut(s)	539
PaeI	GCATGC	1 cut(s)	305
PaeR7I	CTCGAG	1 cut(s)	31
PcsI	WCGNNNNNNNCGW	3 cut(s)	93, 105, 111
PfeI	GAWTC	2 cut(s)	199, 507
PkrI	GCNGC	5 cut(s)	13, 127, 169, 407, 410
PleI	GAGTC	1 cut(s)	319
PluTI	GGCGCC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	319
Psp124BI	GAGCTC	1 cut(s)	38
Psp6I	CCWGG	2 cut(s)	38, 128
PspGI	CCWGG	2 cut(s)	38, 128
PspN4I	GGNNCC	2 cut(s)	124, 180
PspPI	GGNCC	1 cut(s)	178
PspXI	VCTCGAGB	1 cut(s)	31
PsuI	RGATCY	2 cut(s)	60, 450
PvuII	CAGCTG	1 cut(s)	408
SacI	GAGCTC	1 cut(s)	38
SatI	GCNGC	5 cut(s)	12, 126, 168, 406, 409
Sau3AI	GATC	4 cut(s)	60, 159, 450, 459
Sau96I	GGNCC	1 cut(s)	178
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	2 cut(s)	40, 130
SduI	GDGCHC	3 cut(s)	38, 46, 481
SetI	ASST	9 cut(s)	10, 38, 229, 310, 325, 372, 410, 523, 529
SfaNI	GCATC	2 cut(s)	288, 412
SfoI	GGCGCC	1 cut(s)	124
Sfr274I	CTCGAG	1 cut(s)	31
SfuI	TTCGAA	1 cut(s)	539
SlaI	CTCGAG	1 cut(s)	31
SmlI	CTYRAG	2 cut(s)	31, 522
SmoI	CTYRAG	2 cut(s)	31, 522
SphI	GCATGC	1 cut(s)	305
Sse9I	AATT	2 cut(s)	255, 393
SsiI	CCGC	4 cut(s)	20, 81, 126, 378
SspDI	GGCGCC	1 cut(s)	122
SstI	GAGCTC	1 cut(s)	38
StyD4I	CCNGG	2 cut(s)	38, 128
TaqI	TCGA	4 cut(s)	32, 293, 462, 539
TasI	AATT	2 cut(s)	255, 393
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	2 cut(s)	199, 507
TscAI	CASTG	1 cut(s)	481
TseI	GCWGC	4 cut(s)	11, 167, 405, 408
TspGWI	ACGGA	1 cut(s)	103
TspRI	CASTG	1 cut(s)	481
VneI	GTGCAC	1 cut(s)	477
XceI	RCATGY	1 cut(s)	305
XhoI	CTCGAG	1 cut(s)	31
Zsp2I	ATGCAT	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.