Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009352

Physical Location & Seq

Genomic Coordinates Reverse (-)

23033915 .. 23035955

Gene Structure 2041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g29800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTCAGGCGCGGCAATAGCGGTGGGTTACTCAAGCTCGTGGGCCCGCGCCCTCGTCCAGATCTCTCCCTACACTTTCTCCGCTCTCGGTATCGCCATTGCTATCGGCGTCTCTGTCCTCGGCGCCGCCTGGGGGATTTACATCACCGGCAGTAGTTTGATCGGCGCGGCAATCAAGGCTCCTCGCATCACTTCCAAGAATCTCATCAGTGTGATCTTTTGTGAAGCTGTTGCTATATATGGTGTTATTGTTGCAATCATTCTACAAACAAAGTTAGAGAGTGTTCCTGCTTCAAGGATATATGCTCCTGAATCTCTTAGAGCTGGATATGCAATCTTTGCTTCTGGAATCATTGTGGGATTTGCGAACCTTGTCTGCGGGTTGTGTGTGGGAATCATTGGAAGCAGCTGTGCGTTGTCCGATGCCCAGAACTCAACACTTTTTGTGAAGATCCTTGTGATTGAGATCTTTGGCAGCGCCCTTGGATTATTTGGAGTAATTGTTGGAATCATAATGTCAGCTCAAGCAACATGGCCTACAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0008553 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0015988 GO:0015991 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0097708 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

182

Amino Acids

18.49

Weight (kDa)

9.0

Isoelectric Point (pI)

29.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	29 - 88	4.3e-17	ATP synthase subunit C
ATP-synt_C	PF00137	113 - 172	2.3e-12	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25610 AT2G25610 AT4G32530 AT4G32530
fragaria_vesca	FvH4_2g29800
malus_domestica	MD08G1141700.v1.1 MD15G1118200.v1.1
prunus_persica	Prupe.1G471600_v2.0.a1 Prupe.1G471600_v2.0.a1 Prupe.1G471600_v2.0.a1
pyrus_communis	pycom08g11960
rosa_chinensis	RchiOBHm_Chr6g0298821
rosa_laevigata	RLG00000011482
rosa_multiflora	Rmu_ssc0000397.1_g000018
rosa_roxburghii	Rroxscaffold_7G00169300
rosa_rugosa	Rorug06G0283100
rosa_samantha	Rh6AG394800 Rh6BG402700 Rh6CG408400 Rh6DG395200
rosa_wichuraiana	Rw5G000010 Rw6G034540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AccBSI	CCGCTC	1 cut(s)	83
AccII	CGCG	3 cut(s)	11, 48, 167
AciI	CCGC	7 cut(s)	11, 20, 46, 81, 126, 167, 378
AclWI	GGATC	1 cut(s)	445
AcyI	GRCGYC	2 cut(s)	108, 123
AfiI	CCNNNNNNNGG	1 cut(s)	132
AgsI	TTSAA	1 cut(s)	294
AjnI	CCWGG	1 cut(s)	128
AluBI	AGCT	5 cut(s)	36, 227, 323, 408, 521
AluI	AGCT	5 cut(s)	36, 227, 323, 408, 521
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	1 cut(s)	445
AoxI	GGCC	2 cut(s)	42, 533
ApaI	GGGCCC	1 cut(s)	46
ApeKI	GCWGC	2 cut(s)	405, 474
AspLEI	GCGC	5 cut(s)	11, 50, 125, 167, 479
AspS9I	GGNCC	2 cut(s)	42, 43
AsuHPI	GGTGA	1 cut(s)	136
BaeGI	GKGCMC	1 cut(s)	46
BanI	GGYRCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	46
BauI	CACGAG	1 cut(s)	37
BbvI	GCAGC	2 cut(s)	417, 486
BciT130I	CCWGG	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	115
BfoI	RGCGCY	2 cut(s)	126, 480
BglII	AGATCT	2 cut(s)	60, 465
BisI	GCNGC	5 cut(s)	12, 126, 168, 406, 475
BlsI	GCNGC	5 cut(s)	13, 127, 169, 407, 476
Bme1390I	CCNGG	1 cut(s)	130
BmgT120I	GGNCC	2 cut(s)	42, 43
BmiI	GGNNCC	3 cut(s)	44, 124, 180
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	2 cut(s)	195, 412
BpuEI	CTTGAG	2 cut(s)	16, 507
BsaBI	GATNNNNATC	2 cut(s)	140, 464
BsaHI	GRCGYC	2 cut(s)	108, 123
BsaJI	CCNNGG	3 cut(s)	118, 129, 481
BsaXI	ACNNNNNCTCC	4 cut(s)	62, 92, 486, 516
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
Bse118I	RCCGGY	1 cut(s)	146
Bse3DI	GCAATG	1 cut(s)	96
Bse8I	GATNNNNATC	2 cut(s)	140, 464
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	3 cut(s)	118, 129, 481
BseJI	GATNNNNATC	2 cut(s)	140, 464
BseLI	CCNNNNNNNGG	1 cut(s)	132
BseMI	GCAATG	1 cut(s)	96
BseRI	GAGGAG	1 cut(s)	171
BseSI	GKGCMC	1 cut(s)	46
BseXI	GCAGC	2 cut(s)	417, 486
Bsh1236I	CGCG	3 cut(s)	11, 48, 167
BshFI	GGCC	2 cut(s)	44, 535
BshNI	GGYRCC	1 cut(s)	122
BsiSI	CCGG	1 cut(s)	147
BslI	CCNNNNNNNGG	1 cut(s)	132
BsmAI	GTCTC	1 cut(s)	115
BsmBI	CGTCTC	1 cut(s)	115
BsnI	GGCC	2 cut(s)	44, 535
Bsp120I	GGGCCC	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	5 cut(s)	60, 159, 213, 450, 465
BspACI	CCGC	7 cut(s)	11, 20, 46, 81, 126, 167, 378
BspANI	GGCC	2 cut(s)	44, 535
BspFNI	CGCG	3 cut(s)	11, 48, 167
BspLI	GGNNCC	3 cut(s)	44, 124, 180
BspPI	GGATC	1 cut(s)	445
BspT107I	GGYRCC	1 cut(s)	122
BsrBI	CCGCTC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	96
BsrFI	RCCGGY	1 cut(s)	146
BssAI	RCCGGY	1 cut(s)	146
BssECI	CCNNGG	3 cut(s)	118, 129, 481
BssMI	GATC	5 cut(s)	60, 159, 213, 450, 465
BssNI	GRCGYC	2 cut(s)	108, 123
BssSI	CACGAG	1 cut(s)	37
BssT1I	CCWWGG	1 cut(s)	481
Bst2BI	CACGAG	1 cut(s)	37
Bst2UI	CCWGG	1 cut(s)	130
BstACI	GRCGYC	2 cut(s)	108, 123
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	1 cut(s)	317
BstFNI	CGCG	3 cut(s)	11, 48, 167
BstH2I	RGCGCY	2 cut(s)	126, 480
BstHHI	GCGC	5 cut(s)	11, 50, 125, 167, 479
BstKTI	GATC	5 cut(s)	63, 162, 216, 453, 468
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	5 cut(s)	60, 159, 213, 450, 465
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 176, 329, 338
BstNI	CCWGG	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	128
BstSLI	GKGCMC	1 cut(s)	46
BstUI	CGCG	3 cut(s)	11, 48, 167
BstV1I	GCAGC	2 cut(s)	417, 486
BstX2I	RGATCY	3 cut(s)	60, 450, 465
BstYI	RGATCY	3 cut(s)	60, 450, 465
BsuRI	GGCC	2 cut(s)	44, 535
BtsIMutI	CAGTG	1 cut(s)	214
Cac8I	GCNNGC	1 cut(s)	46
CfoI	GCGC	5 cut(s)	11, 50, 125, 167, 479
Cfr10I	RCCGGY	1 cut(s)	146
Cfr13I	GGNCC	2 cut(s)	42, 43
CseI	GACGC	1 cut(s)	97
CspCI	CAANNNNNGTGG	1 cut(s)	38
CviAII	CATG	1 cut(s)	531
CviJI	RGCY	8 cut(s)	36, 44, 179, 227, 323, 408, 521, 535
CviKI_1	RGCY	8 cut(s)	36, 44, 179, 227, 323, 408, 521, 535
DdeI	CTNAG	1 cut(s)	317
DinI	GGCGCC	1 cut(s)	124
DpnI	GATC	5 cut(s)	62, 161, 215, 452, 467
DpnII	GATC	5 cut(s)	60, 159, 213, 450, 465
Eco130I	CCWWGG	1 cut(s)	481
Eco24I	GRGCYC	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	481
EcoT38I	GRGCYC	1 cut(s)	46
EgeI	GGCGCC	1 cut(s)	124
EheI	GGCGCC	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	481
Esp3I	CGTCTC	1 cut(s)	115
FaeI	CATG	1 cut(s)	534
FaiI	YATR	8 cut(s)	236, 238, 240, 301, 303, 330, 512, 532
FatI	CATG	1 cut(s)	530
FauI	CCCGC	2 cut(s)	53, 371
Fnu4HI	GCNGC	5 cut(s)	12, 126, 168, 406, 475
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	5 cut(s)	12, 126, 168, 406, 475
GlaI	GCGC	5 cut(s)	10, 49, 124, 166, 478
GluI	GCNGC	5 cut(s)	12, 126, 168, 406, 475
HaeII	RGCGCY	2 cut(s)	126, 480
HaeIII	GGCC	2 cut(s)	44, 535
HapII	CCGG	1 cut(s)	147
HgaI	GACGC	1 cut(s)	97
HhaI	GCGC	5 cut(s)	11, 50, 125, 167, 479
Hin1I	GRCGYC	2 cut(s)	108, 123
Hin1II	CATG	1 cut(s)	534
Hin6I	GCGC	5 cut(s)	9, 48, 123, 165, 477
HinP1I	GCGC	5 cut(s)	9, 48, 123, 165, 477
HinfI	GANTC	5 cut(s)	199, 311, 348, 393, 507
HpaII	CCGG	1 cut(s)	147
HphI	GGTGA	1 cut(s)	136
Hpy188I	TCNGA	1 cut(s)	421
Hpy188III	TCNNGA	3 cut(s)	58, 308, 345
HpyCH4V	TGCA	2 cut(s)	254, 332
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 176, 329, 338
HpyF3I	CTNAG	1 cut(s)	317
Hsp92I	GRCGYC	2 cut(s)	108, 123
Hsp92II	CATG	1 cut(s)	534
HspAI	GCGC	5 cut(s)	9, 48, 123, 165, 477
KasI	GGCGCC	1 cut(s)	122
Kzo9I	GATC	5 cut(s)	60, 159, 213, 450, 465
LmnI	GCTCC	2 cut(s)	184, 310
LpnPI	CCDG	9 cut(s)	71, 115, 142, 160, 300, 309, 321, 330, 440
Lsp1109I	GCAGC	2 cut(s)	417, 486
LweI	GCATC	2 cut(s)	195, 412
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	5 cut(s)	62, 161, 215, 452, 467
MbiI	CCGCTC	1 cut(s)	83
MboI	GATC	5 cut(s)	60, 159, 213, 450, 465
MboII	GAAGA	1 cut(s)	460
MflI	RGATCY	3 cut(s)	60, 450, 465
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	1 cut(s)	498
Mly113I	GGCGCC	1 cut(s)	123
MmeI	TCCRAC	1 cut(s)	484
MnlI	CCTC	3 cut(s)	62, 128, 192
MslI	CAYNNNNRTG	1 cut(s)	209
MspA1I	CMGCKG	1 cut(s)	408
MspI	CCGG	1 cut(s)	147
MspR9I	CCNGG	1 cut(s)	130
MvaI	CCWGG	1 cut(s)	130
MvnI	CGCG	3 cut(s)	11, 48, 167
MwoI	GCNNNNNNNGC	4 cut(s)	17, 176, 329, 338
NarI	GGCGCC	1 cut(s)	123
NdeII	GATC	5 cut(s)	60, 159, 213, 450, 465
NlaIII	CATG	1 cut(s)	534
NlaIV	GGNNCC	3 cut(s)	44, 124, 180
NmeAIII	GCCGAG	1 cut(s)	99
PfeI	GAWTC	5 cut(s)	199, 311, 348, 393, 507
PkrI	GCNGC	5 cut(s)	13, 127, 169, 407, 476
PluTI	GGCGCC	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	128
PspN4I	GGNNCC	3 cut(s)	44, 124, 180
PspOMI	GGGCCC	1 cut(s)	42
PspPI	GGNCC	2 cut(s)	42, 43
PsuI	RGATCY	3 cut(s)	60, 450, 465
PvuII	CAGCTG	1 cut(s)	408
RseI	CAYNNNNRTG	1 cut(s)	209
SatI	GCNGC	5 cut(s)	12, 126, 168, 406, 475
Sau3AI	GATC	5 cut(s)	60, 159, 213, 450, 465
Sau96I	GGNCC	2 cut(s)	42, 43
ScrFI	CCNGG	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	6 cut(s)	38, 229, 325, 372, 410, 523
SfaNI	GCATC	2 cut(s)	195, 412
SfoI	GGCGCC	1 cut(s)	124
SmiMI	CAYNNNNRTG	1 cut(s)	209
SmlI	CTYRAG	2 cut(s)	31, 522
SmoI	CTYRAG	2 cut(s)	31, 522
Sse9I	AATT	1 cut(s)	498
SsiI	CCGC	7 cut(s)	11, 20, 46, 81, 126, 167, 378
SspDI	GGCGCC	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	128
StyI	CCWWGG	1 cut(s)	481
TasI	AATT	1 cut(s)	498
TauI	GCSGC	3 cut(s)	14, 128, 170
TfiI	GAWTC	5 cut(s)	199, 311, 348, 393, 507
TscAI	CASTG	1 cut(s)	214
TseI	GCWGC	2 cut(s)	405, 474
TspRI	CASTG	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.