Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009352

Physical Location & Seq

Genomic Coordinates Reverse (-)

15693114 .. 15695283

Gene Structure 2170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G32530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTCTGGTGTGGTTGCTCTTGGTCATGCGAGCTCGTGGGGCGCAGCGCTGGTAAGGATCTCGCCGTATACTTTCTCCGCAATCGGAATCGCCATCTCGATCGGTGTCTCAGTCCTCGGTGCCGCCTGGGGAATTTACATTACGGGAAGTAGTTTGATCGGTGCGGCTATAGAAGCTCCTCGTATTACTTCGAAGAATCTCATCAGTGTCATCTTTTGCGAAGCTGTTGCTATATATGGAGTTATTGTTGCAATCATACTGCAAACAAAGTTGGAGAGTGTCCCATCTTCAAAGATGTATGATGCTGAGTCTCTTAGAGCTGGATATGCAATCTTTGCATCTGGAATTATAGTTGGATTCGCCAACCTTGTATGCGGGTTATGTGTAGGAATCATTGGAAGCAGTTGTGCATTGTCCGATGCTCAGAACTCCACACTTTTTGTAAAGATTCTTGTGATCGAGATATTCGGGAGTGCTCTCGGGTTGTTTGGAGTTATTGTGGGAATTATTATGTCTGCACAAGCGACATGGCCAACGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

180

Amino Acids

18.37

Weight (kDa)

7.64

Isoelectric Point (pI)

33.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	28 - 87	1.1e-16	ATP synthase subunit C
ATP-synt_C	PF00137	112 - 171	2.3e-12	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25610 AT2G25610 AT4G32530 AT4G32530
fragaria_vesca	FvH4_2g29800
malus_domestica	MD08G1141700.v1.1 MD15G1118200.v1.1
prunus_persica	Prupe.1G471600_v2.0.a1 Prupe.1G471600_v2.0.a1 Prupe.1G471600_v2.0.a1
pyrus_communis	pycom08g11960
rosa_chinensis	RchiOBHm_Chr6g0298821
rosa_laevigata	RLG00000011482
rosa_multiflora	Rmu_ssc0000397.1_g000018
rosa_roxburghii	Rroxscaffold_7G00169300
rosa_rugosa	Rorug06G0283100
rosa_samantha	Rh6AG394800 Rh6BG402700 Rh6CG408400 Rh6DG395200
rosa_wichuraiana	Rw5G000010 Rw6G034540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	119
AccI	GTMKAC	1 cut(s)	68
AciI	CCGC	4 cut(s)	78, 123, 164, 375
AclWI	GGATC	1 cut(s)	65
AcoI	YGGCCR	1 cut(s)	530
AcsI	RAATTY	1 cut(s)	132
AfeI	AGCGCT	1 cut(s)	48
AgsI	TTSAA	1 cut(s)	291
AjnI	CCWGG	1 cut(s)	125
AluBI	AGCT	4 cut(s)	33, 176, 224, 320
AluI	AGCT	4 cut(s)	33, 176, 224, 320
Alw21I	GWGCWC	2 cut(s)	35, 478
Alw26I	GTCTC	2 cut(s)	112, 315
AlwI	GGATC	1 cut(s)	65
Ama87I	CYCGRG	1 cut(s)	479
Aor51HI	AGCGCT	1 cut(s)	48
AoxI	GGCC	1 cut(s)	530
ApeKI	GCWGC	1 cut(s)	44
ApoI	RAATTY	1 cut(s)	132
AspLEI	GCGC	2 cut(s)	44, 49
AsuII	TTCGAA	1 cut(s)	191
AvaI	CYCGRG	1 cut(s)	479
BalI	TGGCCA	1 cut(s)	532
BanI	GGYRCC	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	35
BauI	CACGAG	1 cut(s)	34
Bbv12I	GWGCWC	2 cut(s)	35, 478
BbvI	GCAGC	1 cut(s)	56
BccI	CCATC	2 cut(s)	101, 292
BceAI	ACGGC	1 cut(s)	49
BcgI	CGANNNNNNTGC	2 cut(s)	209, 243
BciT130I	CCWGG	1 cut(s)	127
BcoDI	GTCTC	2 cut(s)	112, 315
BfmI	CTRYAG	1 cut(s)	168
BfoI	RGCGCY	1 cut(s)	50
BisI	GCNGC	3 cut(s)	45, 123, 165
BlsI	GCNGC	3 cut(s)	46, 124, 166
Bme1390I	CCNGG	1 cut(s)	127
BmeT110I	CYCGRG	1 cut(s)	479
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	1 cut(s)	127
BmsI	GCATC	3 cut(s)	292, 347, 409
Bpu14I	TTCGAA	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	115, 126
BsaXI	ACNNNNNCTCC	4 cut(s)	231, 261, 483, 513
BseBI	CCWGG	1 cut(s)	127
BseDI	CCNNGG	2 cut(s)	115, 126
BseMII	CTCAG	3 cut(s)	123, 297, 437
BseRI	GAGGAG	1 cut(s)	168
BseXI	GCAGC	1 cut(s)	56
BsgI	GTGCAG	1 cut(s)	501
Bsh1285I	CGRYCG	1 cut(s)	102
BshFI	GGCC	1 cut(s)	532
BshNI	GGYRCC	1 cut(s)	119
BsiEI	CGRYCG	1 cut(s)	102
BsiHKAI	GWGCWC	2 cut(s)	35, 478
BsiHKCI	CYCGRG	1 cut(s)	479
BslFI	GGGAC	1 cut(s)	266
BsmAI	GTCTC	2 cut(s)	112, 315
BsmFI	GGGAC	1 cut(s)	266
BsnI	GGCC	1 cut(s)	532
BsoBI	CYCGRG	1 cut(s)	479
Bsp119I	TTCGAA	1 cut(s)	191
Bsp1286I	GDGCHC	2 cut(s)	35, 478
Bsp143I	GATC	4 cut(s)	57, 99, 156, 456
BspACI	CCGC	4 cut(s)	78, 123, 164, 375
BspANI	GGCC	1 cut(s)	532
BspCNI	CTCAG	3 cut(s)	122, 298, 436
BspLI	GGNNCC	1 cut(s)	121
BspPI	GGATC	1 cut(s)	65
BspT104I	TTCGAA	1 cut(s)	191
BspT107I	GGYRCC	1 cut(s)	119
BssECI	CCNNGG	2 cut(s)	115, 126
BssMI	GATC	4 cut(s)	57, 99, 156, 456
BssNAI	GTATAC	1 cut(s)	69
BssSI	CACGAG	1 cut(s)	34
Bst1107I	GTATAC	1 cut(s)	69
Bst2BI	CACGAG	1 cut(s)	34
Bst2UI	CCWGG	1 cut(s)	127
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstBI	TTCGAA	1 cut(s)	191
BstC8I	GCNNGC	1 cut(s)	31
BstDEI	CTNAG	4 cut(s)	109, 306, 314, 423
BstH2I	RGCGCY	1 cut(s)	50
BstHHI	GCGC	2 cut(s)	44, 49
BstKTI	GATC	4 cut(s)	60, 102, 159, 459
BstMAI	GTCTC	2 cut(s)	112, 315
BstMBI	GATC	4 cut(s)	57, 99, 156, 456
BstMCI	CGRYCG	1 cut(s)	102
BstMWI	GCNNNNNNNGC	4 cut(s)	39, 173, 326, 335
BstNI	CCWGG	1 cut(s)	127
BstSCI	CCNGG	1 cut(s)	125
BstSFI	CTRYAG	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	56
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
BstZ17I	GTATAC	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	532
BtsIMutI	CAGTG	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	31
CfoI	GCGC	2 cut(s)	44, 49
CspCI	CAANNNNNGTGG	2 cut(s)	421, 456
CviAII	CATG	2 cut(s)	26, 528
CviJI	RGCY	6 cut(s)	33, 167, 176, 224, 320, 532
CviKI_1	RGCY	6 cut(s)	33, 167, 176, 224, 320, 532
DdeI	CTNAG	4 cut(s)	109, 306, 314, 423
DpnI	GATC	4 cut(s)	59, 101, 158, 458
DpnII	GATC	4 cut(s)	57, 99, 156, 456
EaeI	YGGCCR	1 cut(s)	530
Ecl136II	GAGCTC	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	35
Eco47III	AGCGCT	1 cut(s)	48
Eco53kI	GAGCTC	1 cut(s)	33
Eco88I	CYCGRG	1 cut(s)	479
EcoICRI	GAGCTC	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	125
EcoT38I	GRGCYC	1 cut(s)	35
FaeI	CATG	2 cut(s)	29, 531
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	2 cut(s)	25, 527
FauI	CCCGC	1 cut(s)	368
FblI	GTMKAC	1 cut(s)	68
Fnu4HI	GCNGC	3 cut(s)	45, 123, 165
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	3 cut(s)	45, 123, 165
GlaI	GCGC	2 cut(s)	43, 48
GluI	GCNGC	3 cut(s)	45, 123, 165
HaeII	RGCGCY	1 cut(s)	50
HaeIII	GGCC	1 cut(s)	532
HhaI	GCGC	2 cut(s)	44, 49
Hin1II	CATG	2 cut(s)	29, 531
Hin6I	GCGC	2 cut(s)	42, 47
HinP1I	GCGC	2 cut(s)	42, 47
HinfI	GANTC	6 cut(s)	87, 196, 308, 357, 390, 448
Hpy166II	GTNNAC	1 cut(s)	69
Hpy188I	TCNGA	3 cut(s)	86, 418, 426
Hpy188III	TCNNGA	4 cut(s)	97, 342, 460, 469
Hpy8I	GTNNAC	1 cut(s)	69
HpyCH4V	TGCA	6 cut(s)	251, 262, 329, 338, 410, 518
HpyF10VI	GCNNNNNNNGC	4 cut(s)	39, 173, 326, 335
HpyF3I	CTNAG	4 cut(s)	109, 306, 314, 423
Hsp92II	CATG	2 cut(s)	29, 531
HspAI	GCGC	2 cut(s)	42, 47
Kzo9I	GATC	4 cut(s)	57, 99, 156, 456
LmnI	GCTCC	1 cut(s)	181
LpnPI	CCDG	5 cut(s)	35, 112, 139, 306, 327
Lsp1109I	GCAGC	1 cut(s)	56
LweI	GCATC	3 cut(s)	292, 347, 409
MalI	GATC	4 cut(s)	59, 101, 158, 458
MboI	GATC	4 cut(s)	57, 99, 156, 456
MboII	GAAGA	2 cut(s)	205, 279
MflI	RGATCY	1 cut(s)	57
MhlI	GDGCHC	2 cut(s)	35, 478
MlsI	TGGCCA	1 cut(s)	532
MluCI	AATT	3 cut(s)	132, 345, 504
MluNI	TGGCCA	1 cut(s)	532
MlyI	GAGTC	1 cut(s)	317
MmeI	TCCRAC	2 cut(s)	252, 334
MnlI	CCTC	2 cut(s)	125, 189
Mox20I	TGGCCA	1 cut(s)	532
MscI	TGGCCA	1 cut(s)	532
Msp20I	TGGCCA	1 cut(s)	532
MspR9I	CCNGG	1 cut(s)	127
MteI	GCGCNGCGC	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	127
MwoI	GCNNNNNNNGC	4 cut(s)	39, 173, 326, 335
NdeII	GATC	4 cut(s)	57, 99, 156, 456
NlaIII	CATG	2 cut(s)	29, 531
NlaIV	GGNNCC	1 cut(s)	121
NspV	TTCGAA	1 cut(s)	191
PfeI	GAWTC	5 cut(s)	87, 196, 357, 390, 448
PkrI	GCNGC	3 cut(s)	46, 124, 166
Ple19I	CGATCG	1 cut(s)	102
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
Psp124BI	GAGCTC	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	121
PsuI	RGATCY	1 cut(s)	57
PvuI	CGATCG	1 cut(s)	102
SacI	GAGCTC	1 cut(s)	35
SatI	GCNGC	3 cut(s)	45, 123, 165
Sau3AI	GATC	4 cut(s)	57, 99, 156, 456
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	1 cut(s)	127
SduI	GDGCHC	2 cut(s)	35, 478
SetI	ASST	5 cut(s)	35, 178, 226, 322, 369
SfaNI	GCATC	3 cut(s)	292, 347, 409
SfcI	CTRYAG	1 cut(s)	168
SfuI	TTCGAA	1 cut(s)	191
Sse9I	AATT	3 cut(s)	132, 345, 504
SsiI	CCGC	4 cut(s)	78, 123, 164, 375
SstI	GAGCTC	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	125
TaqI	TCGA	3 cut(s)	98, 191, 459
TasI	AATT	3 cut(s)	132, 345, 504
TauI	GCSGC	2 cut(s)	125, 167
TfiI	GAWTC	5 cut(s)	87, 196, 357, 390, 448
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	1 cut(s)	44
TspRI	CASTG	1 cut(s)	211
XapI	RAATTY	1 cut(s)	132
XmiI	GTMKAC	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.